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552 Commits

Author SHA1 Message Date
yxz321
633c8b3d2c feat: RNA add Sirna experiment controls and workflow bindings
- Add bound Sirna workflow names for experiment 1 and experiment 2 submissions.
- Route named workflow submission through a shared create-order core with minimal param payloads.
- Add direct scheduler controls and cancel/take-out manual confirmation handling.
2026-05-12 19:35:39 +08:00
yxz321
e6ee6fc964 fix: sync Bioyond materials over stale slot placeholders 2026-05-12 19:35:39 +08:00
yxz321
765342c4ff feat: RNA aggregate Bioyond LIMS reports
- Add get_order_report and frontend-like get_aggregated_order_report actions for Sirna LIMS debugging.
- Preserve raw checked-section LIMS responses, including collapsed error envelopes, while allowing partial aggregate success.
- Add order-id matching safeguards, aggregate report tests, and scaffold assertions for the new manual-confirm actions.
- Keep Sirna graph debug logging enabled for report/live-probe troubleshooting.
2026-05-12 19:35:39 +08:00
yxz321
3fc94c6720 feat: RNA refine Sirna material sync and placement
- Publish resource tree updates after shared Bioyond external material sync succeeds.
- Keep start_experiment scheduler startup non-blocking while reporting unchecked manual load gates.
- Prefer Bioyond barCode as PLR material code and add safer occupied-slot diagnostics for warehouse placement.
2026-05-12 19:35:39 +08:00
yxz321
d5f0bca643 fix: RNA use preexisting sync_from_external() from base class.
Leave _register_materials_to_tree() commented
2026-05-12 19:35:39 +08:00
yxz321
de51b19e88 fix: RNA restrore manual-confirm table 2026-05-12 19:35:39 +08:00
yxz321
6b94bdd2da fix: align Bioyond deck warehouse axes
- Preserve Sirna col-row labels while flipping visual stack dimensions.
- Rebuild Peptide deck warehouses from live API slot geometry and avoid initial graph overlap.
- Add Peptide deck layout tests and keep Sirna resource tests passing.
2026-05-12 19:35:39 +08:00
yxz321
d009863c8c feat: RNA add guided manual unload end_experiment action
- Add end_experiment manual_confirm action mirroring start_experiment, with three boolean operator gates and twelve EXECUTOR sibling-array output handles for unloaded material manifests.
- Add helpers _build_unload_materials_by_type, _classify_labware_mode, _iter_reagent_liquids, and _clear_unloaded_materials.
- Clear unloaded slots and zero reagent liquid contents on confirmation while preserving trough labware; publish single resource tree update after mutations.
- Wrap action body in _debug_call_session("end_experiment") for opt-in raw call capture.
2026-05-12 19:35:39 +08:00
yxz321
cae828ce74 feat: RNA add per-action raw HTTP call log for Bioyond station
- Add debug_call_log module: contextvar-scoped session(), idempotent wrap_rpc_http, lazy markdown writer with apiKey redaction, source attribution via stack walk, raw_text fallback.
- Centralize Bioyond RPC creation in BioyondWorkstation via _create_bioyond_rpc / _set_hardware_interface / _debug_call_session helpers and _DEBUG_LOG_DEFAULT_DIR.
- Wrap reset, submit_experiment_1, start_experiment, get_order_list action bodies in _debug_call_session for opt-in per-action capture.
- ConnectionMonitor polling stays outside debug sessions and is not logged.
2026-05-12 19:35:39 +08:00
yxz321
5b9f77e81f feat: RNA simplify station action signatures and add order query
- Add explicit reset_operations default; keep hidden plumbing kwargs-only.
- Add read-only get_order_list manual_confirm action that calls order_query with latest_only and exposes order_id/order_ids handles.
- Collapse start_experiment visible signature to (order_id, materials_loaded, timeout_seconds, assignee_user_ids); legacy params consumed from kwargs to preserve runtime contract.
- Reduce submit_experiment_1 graph handles to order_id, resource, coin_cell_code, mount_resource; result dict gains order_id while keeping existing keys.
2026-05-12 19:35:39 +08:00
yxz321
7c83e1bd51 feat: RNA land resource-system mega plan Phases 1-4 plus Phase 5 stack orientation
- Phase 1: fix _publish_resource_tree_update to call update_resource via run_async_func with deck resource list.
- Phase 2: add ID-first material placement resolver chain with material_info and warehouse_inventory caches.
- Phase 3: classify stock-material rows as slot_labware vs liquid_content; idempotent reagent attachment by Bioyond materialId.
- Phase 4: introduce SirnaResourceSynchronizer over BioyondResourceSynchronizer; install once in post_init without double-sync.
- Phase 5: numeric stack orientation and bioyond_axis support in bioyond warehouses/__init__/decks (carries forward prior in-progress edits).
- _resolve_location_to_warehouse now raises on ambiguity; deck constructor accepts warehouse_bioyond_ids kwarg.
2026-05-12 19:35:39 +08:00
yxz321
1f93740580 fix: add assert for convenient API call only when DEBUG_CLI_ENABLED 2026-05-12 19:35:39 +08:00
yxz321
98c27cde40 feat: RNA add guided siRNA manual load gate
- Expose siRNA order and material handles for manual-confirm load workflows.
- Gate scheduler start on explicit material-load confirmation before calling Bioyond RPC.
- Improve lazy API config diagnostics and Sirna warehouse/material resource handling.
2026-05-12 19:35:39 +08:00
yxz321
18c3263e92 feat: RNA refine Bioyond siRNA Experiment 1 submission 2026-05-12 19:35:39 +08:00
yxz321
1519a7d985 feat: RNA add Bioyond siRNA station resources and Experiment 1 submission
- Add siRNA station runtime, decorator metadata, and lazy init
- Implement Experiment 1 submit, start, and reset flows
- Add siRNA deck and numeric warehouse stack resources
- Move siRNA example config to temp_benyao
2026-05-12 19:35:39 +08:00
yxz321
96c3f5a3e5 feat: RNA. Initial sirna workstation implementation. 2026-05-12 19:35:39 +08:00
Xuwznln
927c7e95f5 fix pack install 2 2026-05-09 01:22:42 +08:00
Xuwznln
16910fe25c fix pip install & git install failed 2026-05-08 23:50:00 +08:00
Xuwznln
c38987d94d fix pack build 1 2026-05-08 23:49:32 +08:00
Junhan Chang
e4132111bc Update SKILL.md 2026-05-08 00:08:04 +08:00
Junhan Chang
211ee3027d Update Skills 2026-05-07 23:01:37 +08:00
Xuwznln
32c195d875 Update registry for all param desc 2026-04-27 20:47:52 +08:00
Xuwznln
f145dc04bb Support display_name & desc in new registry system
(cherry picked from commit f71ea2a258)
2026-04-27 20:28:54 +08:00
Xuwznln
195fad9398 upgrade to 0.11.1 2026-04-22 19:54:16 +08:00
Xuwznln
898ed5d34b use gitee to install pylabrobot
fix virtual import
2026-04-22 19:51:10 +08:00
Xuwznln
60cbedc4b2 v0.11.0
(cherry picked from commit 67a74172dc)
2026-04-22 19:50:42 +08:00
Xuwznln
2d6a9f7db9 fix possible conversion error 2026-04-22 00:09:06 +08:00
Xuwznln
5dca3d8c3d update workbench example 2026-04-15 16:33:43 +08:00
Xuwznln
37cbed722a update aksk desc 2026-04-13 23:17:43 +08:00
Xuwznln
132cffbe7c print res query logs 2026-04-13 20:24:48 +08:00
Xuwznln
36e5ff804c Fix skills exec error with action type 2026-04-13 20:16:00 +08:00
Xuwznln
eaf8ad5609 Fix skills exec error with action type 2026-04-13 17:02:38 +08:00
Xuwznln
16122ad2fa Update Skills 2026-04-13 15:57:50 +08:00
Xuwznln
d3fef85dd8 Update Skills addr 2026-04-13 11:15:35 +08:00
Xuwznln
f77ac2a5e8 Change uni-lab. to leap-lab.
Support unit in pylabrobot
2026-04-12 15:32:27 +08:00
Xuwznln
93ac55a65b Support async func. 2026-04-11 18:13:08 +08:00
Xuwznln
af35debe38 change to leap-lab backend. Support feedback interval. Reduce cocurrent lags. 2026-04-11 06:22:53 +08:00
Xuwznln
58997f0654 fix create_resource_with_slot 2026-04-09 17:34:25 +08:00
Xuwznln
fbfc3e30fb update unilabos_formulation & batch-submit-exp 2026-04-09 16:40:31 +08:00
Xuwznln
1d1c1367df scale multi exec thread up to 48 2026-04-09 14:15:38 +08:00
Xuwznln
c91b600e90 update handle creation api 2026-04-02 22:53:31 +08:00
Xuwznln
49b3c850f9 fit cocurrent gap 2026-04-02 16:01:23 +08:00
Xuwznln
25c94af755 add running status debounce 2026-04-01 16:01:22 +08:00
Xuwznln
861a012747 allow non @topic_config support 2026-03-31 13:15:06 +08:00
Xuwznln
ee63e95f50 update skill 2026-03-25 23:20:13 +08:00
Xuwznln
dbf5df6e4d add placeholder keys 2026-03-25 12:11:10 +08:00
Xuwznln
f10c0343ce add placeholder keys 2026-03-25 11:56:40 +08:00
Xuwznln
8b6553bdd9 always free 2026-03-25 11:24:19 +08:00
Xuwznln
e7a4afd6b5 提交实验技能 2026-03-25 00:42:28 +08:00
Xuwznln
f18f6d82fc disable samples 2026-03-24 23:45:50 +08:00
Xuwznln
b7c726635c correct sample demo ret value 2026-03-24 23:24:12 +08:00
Xuwznln
c809912fd3 新增试剂reagent 2026-03-24 23:22:45 +08:00
Xuwznln
d956b27e9f update registry 2026-03-24 23:10:57 +08:00
Xuwznln
ff1e21fcd8 新增manual_confirm 2026-03-24 23:04:00 +08:00
Xuwznln
b9d9666003 add workstation creation skill 2026-03-24 23:03:49 +08:00
Junhan Chang
d776550a4b add virtual_sample_demo 样品追踪测试设备 2026-03-23 16:43:20 +08:00
Xuwznln
3d8123849a add external devices param
fix registry upload missing type
2026-03-23 15:01:16 +08:00
Xuwznln
d2f204c5b0 bump to 0.10.19 2026-03-22 04:17:21 +08:00
Xuwznln
d8922884b1 fast registry load 2026-03-22 04:14:47 +08:00
Xuwznln
427afe83d4 minor fix on skill & registry 2026-03-22 03:36:28 +08:00
Xuwznln
23c2e3b2f7 stripe ros2 schema desc
add create-device-skill
2026-03-22 03:21:13 +08:00
Xuwznln
59c26265e9 new registry system backwards to yaml 2026-03-22 02:19:54 +08:00
Xuwznln
4c2adea55a remove not exist resource 2026-03-21 23:35:51 +08:00
Xuwznln
0f6264503a new registry sys
exp. support with add device
2026-03-21 19:26:24 +08:00
Junhan Chang
2c554182d3 add ai conventions 2026-03-19 14:14:40 +08:00
Xuwznln
6d319d91ff correct raise create resource error 2026-03-10 16:26:37 +08:00
Xuwznln
3155b2f97e ret info fix revert 2026-03-10 16:04:27 +08:00
Xuwznln
e5e30a1c7d ret info fix 2026-03-10 16:00:24 +08:00
Xuwznln
4e82f62327 fix prcxi check 2026-03-10 15:57:27 +08:00
Xuwznln
95d3456214 add create_resource schema 2026-03-10 15:27:39 +08:00
Xuwznln
38bf95b13c re signal host ready event 2026-03-10 14:13:06 +08:00
Xuwznln
f2c0bec02c add websocket connection timeout and improve reconnection logic
add open_timeout parameter to websocket connection
add TimeoutError and InvalidStatus exception handling
implement exponential backoff for reconnection attempts
simplify reconnection logic flow
2026-03-07 04:40:56 +08:00
Xuwznln
e0394bf414 Merge remote-tracking branch 'origin/dev' into dev 2026-03-04 19:18:55 +08:00
Xuwznln
975a56415a import gzip 2026-03-04 19:18:36 +08:00
Xuwznln
cadbe87e3f add gzip 2026-03-04 19:18:19 +08:00
Xuwznln
b993c1f590 add gzip 2026-03-04 19:18:09 +08:00
Xuwznln
e0fae94c10 change pose extra to any 2026-03-04 19:06:58 +08:00
Xuwznln
b5cd181ac1 add isFlapY 2026-03-04 18:59:45 +08:00
Xuwznln
5c047beb83 support container as example
add z index

(cherry picked from commit 145fcaae65)
2026-03-03 18:04:13 +08:00
Xuwznln
b40c087143 fix container volume 2026-03-03 17:13:32 +08:00
Xuwznln
7f1cc3b2a5 update materials 2026-03-03 11:43:52 +08:00
Xuwznln
3f160c2049 更新prcxi deck & 新增 unilabos_resource_slot 2026-03-03 11:40:23 +08:00
Xuwznln
a54e7c0f23 new workflow & prcxi slot removal 2026-03-02 18:29:25 +08:00
Xuwznln
e5015cd5e0 fix size change 2026-03-02 15:52:44 +08:00
Xuwznln
514373c164 v0.10.18
(cherry picked from commit 06b6f0d804)
2026-03-02 02:30:10 +08:00
Xuwznln
fcea02585a no opcua installation on macos 2026-02-28 09:41:37 +08:00
Xuwznln
07cf690897 fix possible crash 2026-02-12 01:46:26 +08:00
Xuwznln
cfea27460a fix deck & host_node 2026-02-12 01:46:24 +08:00
Xuwznln
b7d3e980a9 set liquid with tube 2026-02-12 01:46:23 +08:00
Xuwznln
f9ed6cb3fb add test_resource_schema 2026-02-11 14:02:21 +08:00
Xuwznln
699a0b3ce7 fix test resource schema 2026-02-10 23:08:29 +08:00
Xuwznln
cf3a20ae79 registry update & workflow update 2026-02-10 22:46:07 +08:00
Xuwznln
cdf0652020 add test mode 2026-02-10 15:18:41 +08:00
Xuwznln
60073ff139 support description & tags upload 2026-02-10 14:38:55 +08:00
Xuwznln
a9053b822f fix config load 2026-02-10 13:06:05 +08:00
Xuwznln
d238c2ab8b fix log 2026-02-10 13:04:33 +08:00
Xuwznln
9a7d5c7c82 add registry name & add always free 2026-02-07 02:11:43 +08:00
Xuwznln
4f7d431c0b correct config organic synthesis 2026-02-06 12:04:19 +08:00
Xuwznln
341a1b537c Adapt to new scheduler, sampels, and edge upload format (#230)
* add sample_material

* adapt to new samples sys

* fix pump transfer. fix resource update when protocol & ros callback

* Adapt to new scheduler.
2026-02-06 00:49:53 +08:00
Xuwznln
957fb41a6f Feat/samples (#229)
* add sample_material

* adapt to new samples sys
2026-02-05 00:42:12 +08:00
Xuwznln
26271bcab8 adapt to new samples sys 2026-02-04 18:49:08 +08:00
Xuwznln
84a8223173 adapt to new edge format 2026-02-03 23:22:38 +08:00
Xuwznln
e8d1263488 workflow upload & prcxi transfer liquid 2026-02-03 18:10:32 +08:00
Xuwznln
380b39100d lh liquid 2026-02-03 15:15:57 +08:00
Xuwznln
56eb7e2ab4 speed up registry load 2026-02-02 20:01:04 +08:00
Xuwznln
23ce145f74 workflow upload & set liquid fix & add set liquid with plate 2026-02-02 18:23:33 +08:00
Xuwznln
b0da149252 fix upload workflow json 2026-02-02 17:19:07 +08:00
Xuwznln
07c9e6f0fe save class name when deserialize & protocol execute test 2026-02-02 16:05:17 +08:00
Xuwznln
ccec6b9d77 Support root node change pos 2026-02-02 12:03:19 +08:00
hanhua@dp.tech
dadfdf3d8d add unilabos_class 2026-01-30 18:07:53 +08:00
Xuwznln
400bb073d4 gather query 2026-01-28 13:23:25 +08:00
Xuwznln
3f63c36505 transfer liquid handles 2026-01-28 11:45:45 +08:00
Xuwznln
0ae94f7f3c add msg goal 2026-01-28 09:21:43 +08:00
Xuwznln
7eacae6442 Fix OT2 & ReAdd Virtual Devices 2026-01-28 01:05:32 +08:00
Xuwznln
f7d2cb4b9e CI Check use production mode 2026-01-27 19:59:06 +08:00
Xuwznln
bf980d7248 v0.10.17
(cherry picked from commit 176de521b4)
2026-01-27 19:41:49 +08:00
Xuwznln
27c0544bfc Fix Build 13 2026-01-27 19:36:42 +08:00
Xuwznln
d48e77c9ae Fix Build 12 2026-01-27 19:16:21 +08:00
Xuwznln
e70a5bea66 Fix Build 11 2026-01-27 19:09:39 +08:00
Xuwznln
467d75dc03 Fix Build 10 2026-01-27 17:41:06 +08:00
Xuwznln
9feeb0c430 Fix Build 9 2026-01-27 15:51:40 +08:00
Xuwznln
b2f26ffb28 Fix Build 8 2026-01-27 15:39:15 +08:00
dependabot[bot]
4b0d1553e9 ci(deps): bump actions/checkout from 4 to 6 (#223)
Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v4...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-01-27 15:30:47 +08:00
dependabot[bot]
67ddee2ab2 ci(deps): bump actions/upload-pages-artifact from 3 to 4 (#225)
Bumps [actions/upload-pages-artifact](https://github.com/actions/upload-pages-artifact) from 3 to 4.
- [Release notes](https://github.com/actions/upload-pages-artifact/releases)
- [Commits](https://github.com/actions/upload-pages-artifact/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/upload-pages-artifact
  dependency-version: '4'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-01-27 15:30:38 +08:00
dependabot[bot]
1bcdad9448 ci(deps): bump actions/upload-artifact from 4 to 6 (#224)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4 to 6.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](https://github.com/actions/upload-artifact/compare/v4...v6)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-01-27 15:30:31 +08:00
dependabot[bot]
039c96fe01 ci(deps): bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](https://github.com/actions/configure-pages/compare/v4...v5)

---
updated-dependencies:
- dependency-name: actions/configure-pages
  dependency-version: '5'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2026-01-27 15:30:22 +08:00
Xuwznln
e1555d10a0 Fix Build 7 2026-01-27 15:14:31 +08:00
Xuwznln
f2a96b2041 Fix Build 6 2026-01-27 14:36:35 +08:00
Xuwznln
329349639e Fix Build 5 2026-01-27 14:25:34 +08:00
Xuwznln
e4cc111523 Fix Build 4 2026-01-27 14:19:56 +08:00
Xuwznln
d245ceef1b Fix Build 3 2026-01-27 14:15:16 +08:00
Xuwznln
6db7fbd721 Fix Build 2 2026-01-27 13:45:32 +08:00
Xuwznln
ab05b858e1 Fix Build 1 2026-01-27 13:35:35 +08:00
Xuwznln
43e4c71a8e Update to ROS2 Humble 0.7 2026-01-27 13:31:24 +08:00
Xuwznln
2cf58ca452 Upgrade to py 3.11.14; ros 0.7; unilabos 0.10.16 2026-01-26 16:47:54 +08:00
Xuwznln
fd73bb7dcb CI Check Fix 5 2026-01-26 08:47:27 +08:00
Xuwznln
a02cecfd18 CI Check Fix 4 2026-01-26 08:20:17 +08:00
Xuwznln
d6accc3f1c CI Check Fix 3 2026-01-26 08:14:21 +08:00
Xuwznln
39dc443399 CI Check Fix 2 2026-01-26 02:23:40 +08:00
Xuwznln
37b1fca962 CI Check Fix 1 2026-01-26 02:22:21 +08:00
Xuwznln
216f19fb62 Workbench example, adjust log level, and ci check (#220)
* TestLatency Return Value Example & gitignore update

* Adjust log level & Add workbench virtual example & Add not action decorator & Add check_mode &

* Add CI Check
2026-01-26 02:15:13 +08:00
Xuwznln
ec7ca6a1fe Fix/workstation yb revision (#217)
* Revert log change & update registry

* Revert opcua client & move electrolyte node
2026-01-17 16:50:20 +08:00
Xuwznln
4c8022ee95 Workstation yb merge dev ready 260113 (#216)
* feat(bioyond): 添加计算实验设计功能,支持化合物配比和滴定比例参数

* feat(bioyond): 添加测量小瓶功能,支持基本参数配置

* feat(bioyond): 添加测量小瓶配置,支持新设备参数

* feat(bioyond): 更新仓库布局和尺寸,支持竖向排列的测量小瓶和试剂存放堆栈

* feat(bioyond): 优化任务创建流程,确保无论成功与否都清理任务队列以避免重复累积

* feat(bioyond): 添加设置反应器温度功能,支持温度范围和异常处理

* feat(bioyond): 调整反应器位置配置,统一坐标格式

* feat(bioyond): 添加调度器启动功能,支持任务队列执行并处理异常

* feat(bioyond): 优化调度器启动功能,添加异常处理并更新相关配置

* feat(opcua): 增强节点ID解析兼容性和数据类型处理

改进节点ID解析逻辑以支持多种格式,包括字符串和数字标识符
添加数据类型转换处理,确保写入值时类型匹配
优化错误提示信息,便于调试节点连接问题

* feat(registry): 新增后处理站的设备配置文件

添加后处理站的YAML配置文件,包含动作映射、状态类型和设备描述

* 添加调度器启动功能,合并物料参数配置,优化物料参数处理逻辑

* 添加从 Bioyond 系统自动同步工作流序列的功能,并更新相关配置

* fix:兼容 BioyondReactionStation 中 workflow_sequence 被重写为 property

* fix:同步工作流序列

* feat: remove commented workflow synchronization from `reaction_station.py`.

* 添加时间约束功能及相关配置

* fix:自动更新物料缓存功能,添加物料时更新缓存并在删除时移除缓存项

* fix:在添加物料时处理字符串和字典返回值,确保正确更新缓存

* fix:更新奔曜错误处理报送为物料变更报送,调整日志记录和响应消息

* feat:添加实验报告简化功能,去除冗余信息并保留关键信息

* feat: 添加任务状态事件发布功能,监控并报告任务运行、超时、完成和错误状态

* fix: 修复添加物料时数据格式错误

* Refactor bioyond_dispensing_station and reaction_station_bioyond YAML configurations

- Removed redundant action value mappings from bioyond_dispensing_station.
- Updated goal properties in bioyond_dispensing_station to use enums for target_stack and other parameters.
- Changed data types for end_point and start_point in reaction_station_bioyond to use string enums (Start, End).
- Simplified descriptions and updated measurement units from μL to mL where applicable.
- Removed unused commands from reaction_station_bioyond to streamline the configuration.

* fix:Change the material unit from μL to mL

* fix:refresh_material_cache

* feat: 动态获取工作流步骤ID,优化工作流配置

* feat: 添加清空服务端所有非核心工作流功能

* fix:修复Bottle类的序列化和反序列化方法

* feat:增强材料缓存更新逻辑,支持处理返回数据中的详细信息

* Add debug log

* feat(workstation): update bioyond config migration and coin cell material search logic

- Migrate bioyond_cell config to JSON structure and remove global variable dependencies
- Implement material search confirmation dialog auto-handling
- Add documentation: 20260113_物料搜寻确认弹窗自动处理功能.md and 20260113_配置迁移修改总结.md

* Refactor module paths for Bioyond devices in YAML configuration files

- Updated the module path for BioyondDispensingStation in bioyond_dispensing_station.yaml to reflect the new directory structure.
- Updated the module path for BioyondReactionStation and BioyondReactor in reaction_station_bioyond.yaml to align with the revised organization of the codebase.

* fix: WareHouse 的不可哈希类型错误,优化父节点去重逻辑

* refactor: Move config from module to instance initialization

* fix: 修正 reaction_station 目录名拼写错误

* feat: Integrate material search logic and cleanup deprecated files

- Update coin_cell_assembly.py with material search dialog handling
- Update YB_warehouses.py with latest warehouse configurations
- Remove outdated documentation and test data files

* Refactor: Use instance attributes for action names and workflow step IDs

* refactor: Split tipbox storage into left and right warehouses

* refactor: Merge tipbox storage left and right into single warehouse

---------

Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
Co-authored-by: Andy6M <xieqiming1132@qq.com>
2026-01-17 15:44:18 +08:00
ZiWei
ad21644db0 fix: WareHouse 的不可哈希类型错误,优化父节点去重逻辑 2026-01-14 20:15:05 +08:00
Xuwznln
9dfd58e9af fix parent_uuid fetch when bind_parent_id == node_name 2026-01-14 14:17:29 +08:00
Xuwznln
31c9f9a172 物料更新也是用父节点进行报送 2026-01-13 20:21:37 +08:00
Xuwznln
02cd8de4c5 Add None conversion for tube rack etc. 2026-01-13 17:49:11 +08:00
Xuwznln
a66603ec1c Add set_liquid example. 2026-01-12 22:24:01 +08:00
Xuwznln
ec015e16cd Add create_resource and test_resource example. 2026-01-12 21:17:28 +08:00
Xuwznln
965bf36e8d Add restart.
Temp allow action message.
2026-01-11 21:25:59 +08:00
Xuwznln
aacf3497e0 Add no_update_feedback option. 2026-01-09 17:18:39 +08:00
Xuwznln
657f952e7a Create session_id by edge. 2026-01-09 12:01:57 +08:00
Xuwznln
0165590290 bump version to 0.10.15 2026-01-08 15:37:49 +08:00
Xuwznln
daea1ab54d temp cancel update req 2026-01-08 15:26:31 +08:00
Xuwznln
93cb307396 Fix update with different spot and same parent 2026-01-08 03:46:00 +08:00
Xuwznln
1c312772ae Force update resource when adding new resource / transfer to another resource 2026-01-08 03:07:12 +08:00
Xuwznln
bad1db5094 location not passed to ItemizedCarrier when assign child resource 2026-01-08 03:07:11 +08:00
Xuwznln
f26eb69eca Fix size not pass through. 2026-01-08 03:07:11 +08:00
Xuwznln
12c0770c92 Fix build on macos-intel 2026-01-07 21:11:10 +08:00
Xuwznln
3d2d428a96 Update README.md
Modify resource_tracker file module path.

(cherry picked from commit 8066c200b9)
2026-01-07 20:54:43 +08:00
Xuwznln
78bf57f590 Bump version to 0.10.4 2026-01-07 20:41:23 +08:00
Xuwznln
e227cddab3 Update LICENSE 2026-01-07 20:40:02 +08:00
Xuwznln
f2b993643f Fix drag materials. 2026-01-07 19:40:29 +08:00
Xuwznln
2e14bf197c Fix and tested new create_resource. 2026-01-07 19:26:42 +08:00
Xuwznln
66c18c080a Update create_resource to resource tree mode. 2026-01-07 02:03:43 +08:00
Xuwznln
a1c34f138e Close #208. Fix mock devices.
(cherry picked from commit 28f93737ac)
2025-12-28 23:24:44 +08:00
Xianwei Qi
75bb5ec553 test_transfer_liquid_2 2025-12-26 16:42:50 +08:00
Xianwei Qi
bb95c89829 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-12-26 16:25:19 +08:00
Xianwei Qi
394c140830 test_transfer_liquid 2025-12-26 16:24:55 +08:00
Xuwznln
e6d8d41183 bump version to 0.10.3 2025-12-26 03:26:50 +08:00
Xuwznln
847a300af3 update registry 2025-12-26 03:26:46 +08:00
Xuwznln
a201d7c307 update registry 2025-12-26 03:26:45 +08:00
Xuwznln
3433766bc5 do not modify globally 2025-12-26 03:26:44 +08:00
Xuwznln
7e9e93b29c Prcix9320 (#207)
* 0.10.7 Update (#101)

* Cleanup registry to be easy-understanding (#76)

* delete deprecated mock devices

* rename categories

* combine chromatographic devices

* rename rviz simulation nodes

* organic virtual devices

* parse vessel_id

* run registry completion before merge

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>

* fix: workstation handlers and vessel_id parsing

* fix: working dir error when input config path
feat: report publish topic when error

* modify default discovery_interval to 15s

* feat: add trace log level

* feat: 添加ChinWe设备控制类,支持串口通信和电机控制功能 (#79)

* fix: drop_tips not using auto resource select

* fix: discard_tips error

* fix: discard_tips

* fix: prcxi_res

* add: prcxi res
fix: startup slow

* feat: workstation example

* fix pumps and liquid_handler handle

* feat: 优化protocol node节点运行日志

* fix all protocol_compilers and remove deprecated devices

* feat: 新增use_remote_resource参数

* fix and remove redundant info

* bugfixes on organic protocols

* fix filter protocol

* fix protocol node

* 临时兼容错误的driver写法

* fix: prcxi import error

* use call_async in all service to avoid deadlock

* fix: figure_resource

* Update recipe.yaml

* add workstation template and battery example

* feat: add sk & ak

* update workstation base

* Create workstation_architecture.md

* refactor: workstation_base 重构为仅含业务逻辑,通信和子设备管理交给 ProtocolNode

* refactor: ProtocolNode→WorkstationNode

* Add:msgs.action (#83)

* update: Workstation dev 将版本号从 0.10.3 更新为 0.10.4 (#84)

* Add:msgs.action

* update: 将版本号从 0.10.3 更新为 0.10.4

* simplify resource system

* uncompleted refactor

* example for use WorkstationBase

* feat: websocket

* feat: websocket test

* feat: workstation example

* feat: action status

* fix: station自己的方法注册错误

* fix: 还原protocol node处理方法

* fix: build

* fix: missing job_id key

* ws test version 1

* ws test version 2

* ws protocol

* 增加物料关系上传日志

* 增加物料关系上传日志

* 修正物料关系上传

* 修复工站的tracker实例追踪失效问题

* 增加handle检测,增加material edge关系上传

* 修复event loop错误

* 修复edge上报错误

* 修复async错误

* 更新schema的title字段

* 主机节点信息等支持自动刷新

* 注册表编辑器

* 修复status密集发送时,消息出错

* 增加addr参数

* fix: addr param

* fix: addr param

* 取消labid 和 强制config输入

* Add action definitions for LiquidHandlerSetGroup and LiquidHandlerTransferGroup

- Created LiquidHandlerSetGroup.action with fields for group name, wells, and volumes.
- Created LiquidHandlerTransferGroup.action with fields for source and target group names and unit volume.
- Both actions include response fields for return information and success status.

* Add LiquidHandlerSetGroup and LiquidHandlerTransferGroup actions to CMakeLists

* Add set_group and transfer_group methods to PRCXI9300Handler and update liquid_handler.yaml

* result_info改为字典类型

* 新增uat的地址替换

* runze multiple pump support

(cherry picked from commit 49354fcf39)

* remove runze multiple software obtainer

(cherry picked from commit 8bcc92a394)

* support multiple backbone

(cherry picked from commit 4771ff2347)

* Update runze pump format

* Correct runze multiple backbone

* Update runze_multiple_backbone

* Correct runze pump multiple receive method.

* Correct runze pump multiple receive method.

* 对于PRCXI9320的transfer_group,一对多和多对多

* 移除MQTT,更新launch文档,提供注册表示例文件,更新到0.10.5

* fix import error

* fix dupe upload registry

* refactor ws client

* add server timeout

* Fix: run-column with correct vessel id (#86)

* fix run_column

* Update run_column_protocol.py

(cherry picked from commit e5aa4d940a)

* resource_update use resource_add

* 新增版位推荐功能

* 重新规定了版位推荐的入参

* update registry with nested obj

* fix protocol node log_message, added create_resource return value

* fix protocol node log_message, added create_resource return value

* try fix add protocol

* fix resource_add

* 修复移液站错误的aspirate注册表

* Feature/xprbalance-zhida (#80)

* feat(devices): add Zhida GC/MS pretreatment automation workstation

* feat(devices): add mettler_toledo xpr balance

* balance

* 重新补全zhida注册表

* PRCXI9320 json

* PRCXI9320 json

* PRCXI9320 json

* fix resource download

* remove class for resource

* bump version to 0.10.6

* 更新所有注册表

* 修复protocolnode的兼容性

* 修复protocolnode的兼容性

* Update install md

* Add Defaultlayout

* 更新物料接口

* fix dict to tree/nested-dict converter

* coin_cell_station draft

* refactor: rename "station_resource" to "deck"

* add standardized BIOYOND resources: bottle_carrier, bottle

* refactor and add BIOYOND resources tests

* add BIOYOND deck assignment and pass all tests

* fix: update resource with correct structure; remove deprecated liquid_handler set_group action

* feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92)

* feat: 新威电池测试系统驱动与注册文件

* feat: bring neware driver & battery.json into workstation_dev_YB2

* add bioyond studio draft

* bioyond station with communication init and resource sync

* fix bioyond station and registry

* fix: update resource with correct structure; remove deprecated liquid_handler set_group action

* frontend_docs

* create/update resources with POST/PUT for big amount/ small amount data

* create/update resources with POST/PUT for big amount/ small amount data

* refactor: add itemized_carrier instead of carrier consists of ResourceHolder

* create warehouse by factory func

* update bioyond launch json

* add child_size for itemized_carrier

* fix bioyond resource io

* Workstation templates: Resources and its CRUD, and workstation tasks (#95)

* coin_cell_station draft

* refactor: rename "station_resource" to "deck"

* add standardized BIOYOND resources: bottle_carrier, bottle

* refactor and add BIOYOND resources tests

* add BIOYOND deck assignment and pass all tests

* fix: update resource with correct structure; remove deprecated liquid_handler set_group action

* feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92)

* feat: 新威电池测试系统驱动与注册文件

* feat: bring neware driver & battery.json into workstation_dev_YB2

* add bioyond studio draft

* bioyond station with communication init and resource sync

* fix bioyond station and registry

* create/update resources with POST/PUT for big amount/ small amount data

* refactor: add itemized_carrier instead of carrier consists of ResourceHolder

* create warehouse by factory func

* update bioyond launch json

* add child_size for itemized_carrier

* fix bioyond resource io

---------

Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com>
Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com>

* 更新物料接口

* Workstation dev yb2 (#100)

* Refactor and extend reaction station action messages

* Refactor dispensing station tasks to enhance parameter clarity and add batch processing capabilities

- Updated `create_90_10_vial_feeding_task` to include detailed parameters for 90%/10% vial feeding, improving clarity and usability.
- Introduced `create_batch_90_10_vial_feeding_task` for batch processing of 90%/10% vial feeding tasks with JSON formatted input.
- Added `create_batch_diamine_solution_task` for batch preparation of diamine solution, also utilizing JSON formatted input.
- Refined `create_diamine_solution_task` to include additional parameters for better task configuration.
- Enhanced schema descriptions and default values for improved user guidance.

* 修复to_plr_resources

* add update remove

* 支持选择器注册表自动生成
支持转运物料

* 修复资源添加

* 修复transfer_resource_to_another生成

* 更新transfer_resource_to_another参数,支持spot入参

* 新增test_resource动作

* fix host_node error

* fix host_node test_resource error

* fix host_node test_resource error

* 过滤本地动作

* 移动内部action以兼容host node

* 修复同步任务报错不显示的bug

* feat: 允许返回非本节点物料,后面可以通过decoration进行区分,就不进行warning了

* update todo

* modify bioyond/plr converter, bioyond resource registry, and tests

* pass the tests

* update todo

* add conda-pack-build.yml

* add auto install script for conda-pack-build.yml

(cherry picked from commit 172599adcf)

* update conda-pack-build.yml

* update conda-pack-build.yml

* update conda-pack-build.yml

* update conda-pack-build.yml

* update conda-pack-build.yml

* Add version in __init__.py
Update conda-pack-build.yml
Add create_zip_archive.py

* Update conda-pack-build.yml

* Update conda-pack-build.yml (with mamba)

* Update conda-pack-build.yml

* Fix FileNotFoundError

* Try fix 'charmap' codec can't encode characters in position 16-23: character maps to <undefined>

* Fix unilabos msgs search error

* Fix environment_check.py

* Update recipe.yaml

* Update registry. Update uuid loop figure method. Update install docs.

* Fix nested conda pack

* Fix one-key installation path error

* Bump version to 0.10.7

* Workshop bj (#99)

* Add LaiYu Liquid device integration and tests

Introduce LaiYu Liquid device implementation, including backend, controllers, drivers, configuration, and resource files. Add hardware connection, tip pickup, and simplified test scripts, as well as experiment and registry configuration for LaiYu Liquid. Documentation and .gitignore for the device are also included.

* feat(LaiYu_Liquid): 重构设备模块结构并添加硬件文档

refactor: 重新组织LaiYu_Liquid模块目录结构
docs: 添加SOPA移液器和步进电机控制指令文档
fix: 修正设备配置中的最大体积默认值
test: 新增工作台配置测试用例
chore: 删除过时的测试脚本和配置文件

* add

* 重构: 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py 并更新所有导入引用

- 使用 git mv 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py
- 更新所有相关文件中的导入引用
- 保持代码功能不变,仅改善命名一致性
- 测试确认所有导入正常工作

* 修复: 在 core/__init__.py 中添加 LaiYuLiquidBackend 导出

- 添加 LaiYuLiquidBackend 到导入列表
- 添加 LaiYuLiquidBackend 到 __all__ 导出列表
- 确保所有主要类都可以正确导入

* 修复大小写文件夹名字

* 电池装配工站二次开发教程(带目录)上传至dev (#94)

* 电池装配工站二次开发教程

* Update intro.md

* 物料教程

* 更新物料教程,json格式注释

* Update prcxi driver & fix transfer_liquid mix_times (#90)

* Update prcxi driver & fix transfer_liquid mix_times

* fix: correct mix_times type

* Update liquid_handler registry

* test: prcxi.py

* Update registry from pr

* fix ony-key script not exist

* clean files

---------

Co-authored-by: Junhan Chang <changjh@dp.tech>
Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com>
Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com>
Co-authored-by: LccLink <1951855008@qq.com>
Co-authored-by: lixinyu1011 <61094742+lixinyu1011@users.noreply.github.com>
Co-authored-by: shiyubo0410 <shiyubo@dp.tech>

* fix startup env check.
add auto install during one-key installation

* Try fix one-key build on linux

* Complete all one key installation

* fix: rename schema field to resource_schema with serialization and validation aliases (#104)

Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>

* Fix one-key installation build

Install conda-pack before pack command

Add conda-pack to base when building one-key installer

Fix param error when using mamba run

Try fix one-key build on linux

* Fix conda pack on windows

* add plr_to_bioyond, and refactor bioyond stations

* modify default config

* Fix one-key installation build for windows

* Fix workstation startup
Update registry

* Fix/resource UUID and doc fix (#109)

* Fix ResourceTreeSet load error

* Raise error when using unsupported type to create ResourceTreeSet

* Fix children key error

* Fix children key error

* Fix workstation resource not tracking

* Fix workstation deck & children resource dupe

* Fix workstation deck & children resource dupe

* Fix multiple resource error

* Fix resource tree update

* Fix resource tree update

* Force confirm uuid

* Tip more error log

* Refactor Bioyond workstation and experiment workflow (#105)

Refactored the Bioyond workstation classes to improve parameter handling and workflow management. Updated experiment.py to use BioyondReactionStation with deck and material mappings, and enhanced workflow step parameter mapping and execution logic. Adjusted JSON experiment configs, improved workflow sequence handling, and added UUID assignment to PLR materials. Removed unused station_config and material cache logic, and added detailed docstrings and debug output for workflow methods.

* Fix resource get.
Fix resource parent not found.
Mapping uuid for all resources.

* mount parent uuid

* Add logging configuration based on BasicConfig in main function

* fix workstation node error

* fix workstation node error

* Update boot example

* temp fix for resource get

* temp fix for resource get

* provide error info when cant find plr type

* pack repo info

* fix to plr type error

* fix to plr type error

* Update regular container method

* support no size init

* fix comprehensive_station.json

* fix comprehensive_station.json

* fix type conversion

* fix state loading for regular container

* Update deploy-docs.yml

* Update deploy-docs.yml

---------

Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>

* Close #107
Update doc url.

* Fix/update resource (#112)

* cancel upload_registry

* Refactor Bioyond workstation and experiment workflow -fix (#111)

* refactor(bioyond_studio): 优化材料缓存加载和参数验证逻辑

改进材料缓存加载逻辑以支持多种材料类型和详细材料处理
更新工作流参数验证中的字段名从key/value改为Key/DisplayValue
移除未使用的merge_workflow_with_parameters方法
添加get_station_info方法获取工作站基础信息
清理实验文件中的注释代码和更新导入路径

* fix: 修复资源移除时的父资源检查问题

在BaseROS2DeviceNode中,移除资源前添加对父资源是否为None的检查,避免空指针异常
同时更新Bottle和BottleCarrier类以支持**kwargs参数
修正测试文件中Liquid_feeding_beaker的大小写拼写错误

* correct return message

---------

Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>

* fix resource_get in action

* fix(reaction_station): 清空工作流序列和参数避免重复执行 (#113)

在创建任务后清空工作流序列和参数,防止下次执行时累积重复

* Update create_resource device_id

* Update ResourceTracker

add more enumeration in POSE

fix converter in resource_tracker

* Update graphio together with workstation design.

fix(reaction_station): 为步骤参数添加Value字段传个BY后端

fix(bioyond/warehouses): 修正仓库尺寸和物品排列参数

调整仓库的x轴和z轴物品数量以及物品尺寸参数,使其符合4x1x4的规格要求

fix warehouse serialize/deserialize

fix bioyond converter

fix itemized_carrier.unassign_child_resource

allow not-loaded MSG in registry

add layout serializer & converter

warehouseuse A1-D4; add warehouse layout

fix(graphio): 修正bioyond到plr资源转换中的坐标计算错误

Fix resource assignment and type mapping issues

Corrects resource assignment in ItemizedCarrier by using the correct spot key from _ordering. Updates graphio to use 'typeName' instead of 'name' for type mapping in resource_bioyond_to_plr. Renames DummyWorkstation to BioyondWorkstation in workstation_http_service for clarity.

* Update workstation & bioyond example

Refine descriptions in Bioyond reaction station YAML

Updated and clarified field and operation descriptions in the reaction_station_bioyond.yaml file for improved accuracy and consistency. Changes include more precise terminology, clearer parameter explanations, and standardized formatting for operation schemas.

refactor(workstation): 更新反应站参数描述并添加分液站配置文件

修正反应站方法参数描述,使其更准确清晰
添加bioyond_dispensing_station.yaml配置文件

add create_workflow script and test

add invisible_slots to carriers

fix(warehouses): 修正bioyond_warehouse_1x4x4仓库的尺寸参数

调整仓库的num_items_x和num_items_z值以匹配实际布局,并更新物品尺寸参数

save resource get data. allow empty value for layout and cross_section_type

More decks&plates support for bioyond (#115)

refactor(registry): 重构反应站设备配置,简化并更新操作命令

移除旧的自动操作命令,新增针对具体化学操作的命令配置
更新模块路径和配置结构,优化参数定义和描述

fix(dispensing_station): 修正物料信息查询方法调用

将直接调用material_id_query改为通过hardware_interface调用,以符合接口设计规范

* PRCXI Update

修改prcxi连线

prcxi样例图

Create example_prcxi.json

* Update resource extra & uuid.

use ordering to convert identifier to idx

convert identifier to site idx

correct extra key

update extra before transfer

fix multiple instance error

add resource_tree_transfer func

fox itemrized carrier assign child resource

support internal device material transfer

remove extra key

use same callback group

support material extra

support material extra
support update_resource_site in extra

* Update workstation.

modify workstation_architecture docs

bioyond_HR (#133)

* feat: Enhance Bioyond synchronization and resource management

- Implemented synchronization for all material types (consumables, samples, reagents) from Bioyond, logging detailed information for each type.
- Improved error handling and logging during synchronization processes.
- Added functionality to save Bioyond material IDs in UniLab resources for future updates.
- Enhanced the `sync_to_external` method to handle material movements correctly, including querying and creating materials in Bioyond.
- Updated warehouse configurations to support new storage types and improved layout for better resource management.
- Introduced new resource types such as reactors and tip boxes, with detailed specifications.
- Modified warehouse factory to support column offsets for naming conventions (e.g., A05-D08).
- Improved resource tracking by merging extra attributes instead of overwriting them.
- Added a new method for updating resources in Bioyond, ensuring better synchronization of resource changes.

* feat: 添加TipBox和Reactor的配置到bottles.yaml

* fix: 修复液体投料方法中的volume参数处理逻辑

修复solid_feeding_vials方法中的volume参数处理逻辑,优化solvents参数的使用条件

更新液体投料方法,支持通过溶剂信息自动计算体积,添加solvents参数并更新文档描述

Add batch creation methods for vial and solution tasks

添加批量创建90%10%小瓶投料任务和二胺溶液配置任务的功能,更新相关参数和默认值

* 封膜仪、撕膜仪、耗材站接口

* 添加Raman和xrd相关代码

* Resource update & asyncio fix

correct bioyond config

prcxi example

fix append_resource

fix regularcontainer

fix cancel error

fix resource_get param

fix json dumps

support name change during materials change

enable slave mode

change uuid logger to trace level

correct remove_resource stats

disable slave connect websocket

adjust with_children param

modify devices to use correct executor (sleep, create_task)

support sleep and create_task in node

fix run async execution error

* bump version to 0.10.9

update registry

* PRCXI Reset Error Correction (#166)

* change 9320 desk row number to 4

* Updated 9320 host address

* Updated 9320 host address

* Add **kwargs in classes: PRCXI9300Deck and PRCXI9300Container

* Removed all sample_id in prcxi_9320.json to avoid KeyError

* 9320 machine testing settings

* Typo

* Rewrite setup logic to clear error code

* 初始化 step_mode 属性

* 1114物料手册定义教程byxinyu (#165)

* 宜宾奔耀工站deck前端by_Xinyu

* 构建物料教程byxinyu

* 1114物料手册定义教程

* 3d sim (#97)

* 修改lh的json启动

* 修改lh的json启动

* 修改backend,做成sim的通用backend

* 修改yaml的地址,3D模型适配网页生产环境

* 添加laiyu硬件连接

* 修改移液枪的状态判断方法,

修改移液枪的状态判断方法,
添加三轴的表定点与零点之间的转换
添加三轴真实移动的backend

* 修改laiyu移液站

简化移动方法,
取消软件限制位置,
修改当值使用Z轴时也需要重新复位Z轴的问题

* 更新lh以及laiyu workshop

1,现在可以直接通过修改backend,适配其他的移液站,主类依旧使用LiquidHandler,不用重新编写

2,修改枪头判断标准,使用枪头自身判断而不是类的判断,

3,将归零参数用毫米计算,方便手动调整,

4,修改归零方式,上电使用机械归零,确定机械零点,手动归零设置工作区域零点方便计算,二者互不干涉

* 修改枪头动作

* 修改虚拟仿真方法

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: Junhan Chang <changjh@dp.tech>

* 标准化opcua设备接入unilab (#78)

* 初始提交,只保留工作区当前状态

* remove redundant arm_slider meshes

---------

Co-authored-by: Junhan Chang <changjh@dp.tech>

* add new laiyu liquid driver, yaml and json files (#164)

* HR物料同步,前端展示位置修复 (#135)

* 更新Bioyond工作站配置,添加新的物料类型映射和载架定义,优化物料查询逻辑

* 添加Bioyond实验配置文件,定义物料类型映射和设备配置

* 更新bioyond_warehouse_reagent_stack方法,修正试剂堆栈尺寸和布局描述

* 更新Bioyond实验配置,修正物料类型映射,优化设备配置

* 更新Bioyond资源同步逻辑,优化物料入库流程,增强错误处理和日志记录

* 更新Bioyond资源,添加配液站和反应站专用载架,优化仓库工厂函数的排序方式

* 更新Bioyond资源,添加配液站和反应站相关载架,优化试剂瓶和样品瓶配置

* 更新Bioyond实验配置,修正试剂瓶载架ID,确保与设备匹配

* 更新Bioyond资源,移除反应站单烧杯载架,添加反应站单烧瓶载架分类

* Refactor Bioyond resource synchronization and update bottle carrier definitions

- Removed traceback printing in error handling for Bioyond synchronization.
- Enhanced logging for existing Bioyond material ID usage during synchronization.
- Added new bottle carrier definitions for single flask and updated existing ones.
- Refactored dispensing station and reaction station bottle definitions for clarity and consistency.
- Improved resource mapping and error handling in graphio for Bioyond resource conversion.
- Introduced layout parameter in warehouse factory for better warehouse configuration.

* 更新Bioyond仓库工厂,添加排序方式支持,优化坐标计算逻辑

* 更新Bioyond载架和甲板配置,调整样品板尺寸和仓库坐标

* 更新Bioyond资源同步,增强占用位置日志信息,修正坐标转换逻辑

* 更新Bioyond反应站和分配站配置,调整材料类型映射和ID,移除不必要的项

* support name change during materials change

* fix json dumps

* correct tip

* 优化调度器API路径,更新相关方法描述

* 更新 BIOYOND 载架相关文档,调整 API 以支持自带试剂瓶的载架类型,修复资源获取时的子物料处理逻辑

* 实现资源删除时的同步处理,优化出库操作逻辑

* 修复 ItemizedCarrier 中的可见性逻辑

* 保存 Bioyond 原始信息到 unilabos_extra,以便出库时查询

* 根据 resource.capacity 判断是试剂瓶(载架)还是多瓶载架,走不同的奔曜转换

* Fix bioyond bottle_carriers ordering

* 优化 Bioyond 物料同步逻辑,增强坐标解析和位置更新处理

* disable slave connect websocket

* correct remove_resource stats

* change uuid logger to trace level

* enable slave mode

* refactor(bioyond): 统一资源命名并优化物料同步逻辑

- 将DispensingStation和ReactionStation资源统一为PolymerStation命名
- 优化物料同步逻辑,支持耗材类型(typeMode=0)的查询
- 添加物料默认参数配置功能
- 调整仓库坐标布局
- 清理废弃资源定义

* feat(warehouses): 为仓库函数添加col_offset和layout参数

* refactor: 更新实验配置中的物料类型映射命名

将DispensingStation和ReactionStation的物料类型映射统一更名为PolymerStation,保持命名一致性

* fix: 更新实验配置中的载体名称从6VialCarrier到6StockCarrier

* feat(bioyond): 实现物料创建与入库分离逻辑

将物料同步流程拆分为两个独立阶段:transfer阶段只创建物料,add阶段执行入库
简化状态检查接口,仅返回连接状态

* fix(reaction_station): 修正液体进料烧杯体积单位并增强返回结果

将液体进料烧杯的体积单位从μL改为g以匹配实际使用场景
在返回结果中添加merged_workflow和order_params字段,提供更完整的工作流信息

* feat(dispensing_station): 在任务创建返回结果中添加order_params信息

在create_order方法返回结果中增加order_params字段,以便调用方获取完整的任务参数

* fix(dispensing_station): 修改90%物料分配逻辑从分成3份改为直接使用

原逻辑将主称固体平均分成3份作为90%物料,现改为直接使用main_portion

* feat(bioyond): 添加任务编码和任务ID的输出,支持批量任务创建后的状态监控

* refactor(registry): 简化设备配置中的任务结果处理逻辑

将多个单独的任务编码和ID字段合并为统一的return_info字段
更新相关描述以反映新的数据结构

* feat(工作站): 添加HTTP报送服务和任务完成状态跟踪

- 在graphio.py中添加API必需字段
- 实现工作站HTTP服务启动和停止逻辑
- 添加任务完成状态跟踪字典和等待方法
- 重写任务完成报送处理方法记录状态
- 支持批量任务完成等待和报告获取

* refactor(dispensing_station): 移除wait_for_order_completion_and_get_report功能

该功能已被wait_for_multiple_orders_and_get_reports替代,简化代码结构

* fix: 更新任务报告API错误

* fix(workstation_http_service): 修复状态查询中device_id获取逻辑

处理状态查询时安全获取device_id,避免因属性不存在导致的异常

* fix(bioyond_studio): 改进物料入库失败时的错误处理和日志记录

在物料入库API调用失败时,添加更详细的错误信息打印
同时修正station.py中对空响应和失败情况的判断逻辑

* refactor(bioyond): 优化瓶架载体的分配逻辑和注释说明

重构瓶架载体的分配逻辑,使用嵌套循环替代硬编码索引分配
添加更详细的坐标映射说明,明确PLR与Bioyond坐标的对应关系

* fix(bioyond_rpc): 修复物料入库成功时无data字段返回空的问题

当API返回成功但无data字段时,返回包含success标识的字典而非空字典

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@dp.tech>

* nmr

* Update devices

* bump version to 0.10.10

* Update repo files.

* Add get_resource_with_dir & get_resource method

* fix camera & workstation & warehouse & reaction station driver

* update docs, test examples
fix liquid_handler init bug

* bump version to 0.10.11

* Add startup_json_path, disable_browser, port config

* Update oss config

* feat(bioyond_studio): 添加项目API接口支持及优化物料管理功能

添加通用项目API接口方法(_post_project_api, _delete_project_api)用于与LIMS系统交互
实现compute_experiment_design方法用于实验设计计算
新增brief_step_parameters等订单相关接口方法
优化物料转移逻辑,增加异步任务处理
扩展BioyondV1RPC类,添加批量物料操作、订单状态管理等功能

* feat(bioyond): 添加测量小瓶仓库和更新仓库工厂函数参数

* Support unilabos_samples key

* add session_id and normal_exit

* Add result schema and add TypedDict conversion.

* Fix port error

* Add backend api and update doc

* Add get_regular_container func

* Add get_regular_container func

* Transfer_liquid (#176)

* change 9320 desk row number to 4

* Updated 9320 host address

* Updated 9320 host address

* Add **kwargs in classes: PRCXI9300Deck and PRCXI9300Container

* Removed all sample_id in prcxi_9320.json to avoid KeyError

* 9320 machine testing settings

* Typo

* Typo in base_device_node.py

* Enhance liquid handling functionality by adding support for multiple transfer modes (one-to-many, one-to-one, many-to-one) and improving parameter validation. Default channel usage is set when not specified. Adjusted mixing logic to ensure it only occurs when valid conditions are met. Updated documentation for clarity.

* Auto dump logs, fix workstation input schema

* Fix startup with remote resource error

Resource dict fully change to "pose" key

Update oss link

Reduce pylabrobot conversion warning & force enable log dump.

更新 logo 图片

* signal when host node is ready

* fix ros2 future

print all logs to file
fix resource dict dump error

* update version to 0.10.12

* 修改sample_uuid的返回值

* 修改pose标签设定机制

* 添加 aspiate函数返回值

* 返回dispense后的sample_uuid

* 添加self.pending_liquids_dict的重置方法

* 修改prcxi的json文件,解决trach错误问题

* 修改prcxijson,防止PlateT4的硬件错误

* 对laiyu移液站进行部分修改,取消多次初始化的问题

* 修改根据新的物料格式,修改可视化

* 添加切换枪头方法,添加mock振荡与加热方法

* 夹爪添加

* 删除多余的laiyu部分

* 云端可启动夹爪

* Delete __init__.py

* Enhance PRCXI9300 classes with new Container and TipRack implementations, improving state management and initialization logic. Update JSON configuration to reflect type changes for containers and plates.

* 修改上传数据

---------

Co-authored-by: Junhan Chang <changjh@dp.tech>
Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
Co-authored-by: Guangxin Zhang <guangxin.zhang.bio@gmail.com>
Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com>
Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com>
Co-authored-by: LccLink <1951855008@qq.com>
Co-authored-by: lixinyu1011 <61094742+lixinyu1011@users.noreply.github.com>
Co-authored-by: shiyubo0410 <shiyubo@dp.tech>
Co-authored-by: hh.(SII) <103566763+Mile-Away@users.noreply.github.com>
Co-authored-by: Xianwei Qi <qxw@stu.pku.edu.cn>
Co-authored-by: WenzheG <wenzheguo32@gmail.com>
Co-authored-by: Harry Liu <113173203+ALITTLELZ@users.noreply.github.com>
Co-authored-by: q434343 <73513873+q434343@users.noreply.github.com>
Co-authored-by: tt <166512503+tt11142023@users.noreply.github.com>
Co-authored-by: xyc <49015816+xiaoyu10031@users.noreply.github.com>
Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: zhangshixiang <554662886@qq.com>
Co-authored-by: ALITTLELZ <l_LZlz@163.com>
2025-12-26 02:28:56 +08:00
Xuwznln
9e1e6da505 Add topic config 2025-12-26 02:26:17 +08:00
xyc
8a0f000bab add camera driver (#191)
* add camera driver

* add init.py file to cameraSII driver
2025-12-23 18:41:43 +08:00
Xie Qiming
2ffeb49acb 增强新威电池测试系统 OSS 上传功能 / Enhanced Neware Battery Test System OSS Upload (#196)
* feat: neware-oss-upload-enhancement

* feat(neware): enhance OSS upload with metadata and workflow handles
2025-12-23 18:41:15 +08:00
Roy
5fec753fb9 Add post process station and related resources (#195)
* Add post process station and related resources

- Created JSON configuration for post_process_station and its child post_process_deck.
- Added YAML definitions for post_process_station, bottle carriers, bottles, and deck resources.
- Implemented Python classes for bottle carriers, bottles, decks, and warehouses to manage resources in the post process.
- Established a factory method for creating warehouses with customizable dimensions and layouts.
- Defined the structure and behavior of the post_process_deck and its associated warehouses.

* feat(post_process): add post_process_station and related warehouse functionality

- Introduced post_process_station.json to define the post-processing station structure.
- Implemented post_process_warehouse.py to create warehouse configurations with customizable layouts.
- Added warehouses.py for specific warehouse configurations (4x3x1).
- Updated post_process_station.yaml to reflect new module paths for OpcUaClient.
- Refactored bottle carriers and bottles YAML files to point to the new module paths.
- Adjusted deck.yaml to align with the new organizational structure for post_process_deck.
2025-12-23 18:40:09 +08:00
shuchang
acbaff7bb7 prcxi resource (#202)
* prcxi resource

* prcxi_resource

* Fix upload error not showing.
Support str type category.

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
2025-12-23 15:08:04 +08:00
Xuwznln
706323dc3e Merge remote-tracking branch 'origin/dev' into dev 2025-12-23 14:50:54 +08:00
Xuwznln
b0804d939c Fix upload error not showing.
Support str type category.
2025-12-23 14:50:35 +08:00
ZiWei
97788b4e07 feat: introduce wait_time command and configurable device communication timeout. 2025-12-19 18:02:38 +08:00
ZiWei
39cc280c91 feat: Add SyringePump (SY-03B) driver with unified serial/TCP transport for chinwe device, including registry and test configurations. 2025-12-19 03:05:11 +08:00
Xuwznln
d0ac452405 Update organic syn station.
(cherry picked from commit 13a6795657)
2025-12-15 02:34:51 +08:00
Xuwznln
152d3a7563 Update docs 2025-12-14 13:12:19 +08:00
Xuwznln
ef14737839 update "laiyu" missing init file. 2025-12-14 13:08:27 +08:00
Xuwznln
5d5569121c fix "laiyu" missing init file. 2025-12-14 12:55:25 +08:00
Xuwznln
d23e85ade4 fix "🐛 fix" 2025-12-14 01:17:24 +08:00
Haohui
02afafd423 🐛 fix: config file is overwrited by default args even if not be set. 2025-12-12 23:55:38 +08:00
Xianwei Qi
6ac510dcd2 mix
修改了mix,仿真流程报错问题
2025-12-11 23:26:11 +08:00
Xuwznln
ed56c1eba2 reduce logs 2025-12-08 19:23:53 +08:00
Xuwznln
16ee3de086 Add workflow upload func. 2025-12-08 19:12:05 +08:00
Junhan Chang
ced961050d add unilabos/workflow and entrypoint 2025-12-07 17:50:27 +08:00
Xuwznln
11b2c99836 update version to 0.10.12
(cherry picked from commit b1cdef9185)
2025-12-04 18:47:44 +08:00
Xuwznln
04024bc8a3 fix ros2 future 2025-12-04 18:44:50 +08:00
Xuwznln
154048107d print all logs to file
fix resource dict dump error
2025-12-04 16:04:56 +08:00
Xuwznln
0b896870ba signal when host node is ready 2025-12-02 12:00:41 +08:00
Xuwznln
ee609e4aa2 Fix startup with remote resource error 2025-12-02 11:49:59 +08:00
Xuwznln
5551fbf360 Resource dict fully change to "pose" key 2025-12-02 03:45:16 +08:00
Xuwznln
e13b250632 Update oss link 2025-12-01 12:23:07 +08:00
Xuwznln
b8278c5026 Reduce pylabrobot conversion warning & force enable log dump. 2025-11-28 22:41:50 +08:00
ZiWei
53e767a054 更新 logo 图片 2025-11-28 11:35:05 +08:00
Xuwznln
cf7032fa81 Auto dump logs, fix workstation input schema 2025-11-27 14:24:50 +08:00
Xuwznln
97681ba433 Add get_regular_container func 2025-11-27 13:47:47 +08:00
Xuwznln
3fa81ab4f6 Add get_regular_container func
(cherry picked from commit ed8ee29732)
2025-11-27 13:47:46 +08:00
Harry Liu
9f4a69ddf5 Transfer_liquid (#176)
* change 9320 desk row number to 4

* Updated 9320 host address

* Updated 9320 host address

* Add **kwargs in classes: PRCXI9300Deck and PRCXI9300Container

* Removed all sample_id in prcxi_9320.json to avoid KeyError

* 9320 machine testing settings

* Typo

* Typo in base_device_node.py

* Enhance liquid handling functionality by adding support for multiple transfer modes (one-to-many, one-to-one, many-to-one) and improving parameter validation. Default channel usage is set when not specified. Adjusted mixing logic to ensure it only occurs when valid conditions are met. Updated documentation for clarity.
2025-11-26 19:30:42 +08:00
Xuwznln
05ae4e72df Add backend api and update doc 2025-11-26 19:03:31 +08:00
Xuwznln
2870c04086 Fix port error
(cherry picked from commit f1ad0c9c96)
2025-11-25 15:22:19 +08:00
Xuwznln
343e87df0d Add result schema and add TypedDict conversion.
(cherry picked from commit 8fa3407649)
2025-11-25 15:22:18 +08:00
Xuwznln
5d0807cba6 add session_id and normal_exit 2025-11-20 22:42:42 +08:00
Xuwznln
4875977d5f Support unilabos_samples key
(cherry picked from commit 554bcade24)
2025-11-19 15:55:21 +08:00
Xuwznln
956b1c905b Add startup_json_path, disable_browser, port config
(cherry picked from commit acf5fdebf8)
2025-11-19 14:23:39 +08:00
Xuwznln
944911c52a bump version to 0.10.11
(cherry picked from commit 7f7b1c13c0)
2025-11-19 14:23:36 +08:00
Xuwznln
a13b790926 Revert "feat(main): enhance argument parsing for addr and port with priority handling"
This reverts commit 7cc2fe036f.
2025-11-19 14:22:58 +08:00
Xuwznln
9feadd68c6 Update oss config
(cherry picked from commit d39662f65f)
2025-11-19 14:22:26 +08:00
ZiWei
c68d5246d0 feat(bioyond): 添加测量小瓶仓库和更新仓库工厂函数参数 2025-11-19 11:28:35 +08:00
ZiWei
49073f2c77 feat(bioyond_studio): 添加项目API接口支持及优化物料管理功能
添加通用项目API接口方法(_post_project_api, _delete_project_api)用于与LIMS系统交互
实现compute_experiment_design方法用于实验设计计算
新增brief_step_parameters等订单相关接口方法
优化物料转移逻辑,增加异步任务处理
扩展BioyondV1RPC类,添加批量物料操作、订单状态管理等功能
2025-11-18 18:57:47 +08:00
ZiWei
b2afc29f15 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-11-18 18:57:03 +08:00
Xuwznln
4061280f6b Support internal test examples 2025-11-18 18:43:29 +08:00
Xuwznln
6a681e1d73 Update docs 2025-11-18 18:43:29 +08:00
Xuwznln
653e6e1ac3 liquid_handler default use chatterbox instead of rviz backend 2025-11-18 18:43:28 +08:00
ZiWei
2c774bcd1d feat(反应站): 添加反应器子设备支持
- 在设备注册表中添加反应器子设备配置
- 实现BioyondReactor类用于处理反应器数据
- 更新反应站主设备以支持子设备数据同步
- 在测试配置中添加5个反应器实例
2025-11-18 18:43:28 +08:00
ZiWei
2ba395b681 fix(camera): 修正摄像头配置,更新设备ID和UUID参数 2025-11-18 18:43:28 +08:00
ZiWei
b6b3d59083 feat(反应站): 添加反应器子设备支持
- 在设备注册表中添加反应器子设备配置
- 实现BioyondReactor类用于处理反应器数据
- 更新反应站主设备以支持子设备数据同步
- 在测试配置中添加5个反应器实例
2025-11-17 22:55:51 +08:00
ZiWei
f40e3f521c fix(camera): 修正摄像头配置,更新设备ID和UUID参数 2025-11-17 17:07:07 +08:00
Haohui
7cc2fe036f feat(main): enhance argument parsing for addr and port with priority handling 2025-11-16 22:53:54 +08:00
ZiWei
f81d20bb1d fix(warehouse): 修正BioYond 4x4x1仓库的物品尺寸参数 2025-11-16 15:47:10 +08:00
ZiWei
db1b5a869f feat(workstation): 添加温度/粘度报送处理功能
- 在反应站设备配置中添加温度/粘度相关状态类型
- 实现温度/粘度报送处理逻辑并添加ROS消息发布
- 扩展HTTP服务支持温度/粘度报送端点
- 添加HTTP请求日志记录功能
2025-11-16 14:35:53 +08:00
Xuwznln
0136630700 Fix http_client 2025-11-15 23:33:02 +08:00
Xuwznln
3c31811f9e Add get_resource_with_dir & get_resource method
(cherry picked from commit 4189a2cfbe)
2025-11-15 22:54:44 +08:00
ZiWei
64f02ff129 添加物料转移到反应站的功能,支持多组转移任务的配置与执行 2025-11-15 17:49:59 +08:00
ZiWei
7d097b8222 添加从报告中提取实际加料量的功能,支持液体进料滴定的自动公式计算 2025-11-15 13:30:22 +08:00
Xuwznln
d266d21104 Update repo files.
(cherry picked from commit 48895a9bb1)
2025-11-15 03:16:04 +08:00
Xuwznln
b6d0bbcb17 bump version to 0.10.10 2025-11-15 03:10:31 +08:00
Xuwznln
31ebff8e37 Update devices 2025-11-15 03:10:05 +08:00
WenzheG
2132895ba2 nmr 2025-11-15 03:02:23 +08:00
ZiWei
850eeae55a HR物料同步,前端展示位置修复 (#135)
* 更新Bioyond工作站配置,添加新的物料类型映射和载架定义,优化物料查询逻辑

* 添加Bioyond实验配置文件,定义物料类型映射和设备配置

* 更新bioyond_warehouse_reagent_stack方法,修正试剂堆栈尺寸和布局描述

* 更新Bioyond实验配置,修正物料类型映射,优化设备配置

* 更新Bioyond资源同步逻辑,优化物料入库流程,增强错误处理和日志记录

* 更新Bioyond资源,添加配液站和反应站专用载架,优化仓库工厂函数的排序方式

* 更新Bioyond资源,添加配液站和反应站相关载架,优化试剂瓶和样品瓶配置

* 更新Bioyond实验配置,修正试剂瓶载架ID,确保与设备匹配

* 更新Bioyond资源,移除反应站单烧杯载架,添加反应站单烧瓶载架分类

* Refactor Bioyond resource synchronization and update bottle carrier definitions

- Removed traceback printing in error handling for Bioyond synchronization.
- Enhanced logging for existing Bioyond material ID usage during synchronization.
- Added new bottle carrier definitions for single flask and updated existing ones.
- Refactored dispensing station and reaction station bottle definitions for clarity and consistency.
- Improved resource mapping and error handling in graphio for Bioyond resource conversion.
- Introduced layout parameter in warehouse factory for better warehouse configuration.

* 更新Bioyond仓库工厂,添加排序方式支持,优化坐标计算逻辑

* 更新Bioyond载架和甲板配置,调整样品板尺寸和仓库坐标

* 更新Bioyond资源同步,增强占用位置日志信息,修正坐标转换逻辑

* 更新Bioyond反应站和分配站配置,调整材料类型映射和ID,移除不必要的项

* support name change during materials change

* fix json dumps

* correct tip

* 优化调度器API路径,更新相关方法描述

* 更新 BIOYOND 载架相关文档,调整 API 以支持自带试剂瓶的载架类型,修复资源获取时的子物料处理逻辑

* 实现资源删除时的同步处理,优化出库操作逻辑

* 修复 ItemizedCarrier 中的可见性逻辑

* 保存 Bioyond 原始信息到 unilabos_extra,以便出库时查询

* 根据 resource.capacity 判断是试剂瓶(载架)还是多瓶载架,走不同的奔曜转换

* Fix bioyond bottle_carriers ordering

* 优化 Bioyond 物料同步逻辑,增强坐标解析和位置更新处理

* disable slave connect websocket

* correct remove_resource stats

* change uuid logger to trace level

* enable slave mode

* refactor(bioyond): 统一资源命名并优化物料同步逻辑

- 将DispensingStation和ReactionStation资源统一为PolymerStation命名
- 优化物料同步逻辑,支持耗材类型(typeMode=0)的查询
- 添加物料默认参数配置功能
- 调整仓库坐标布局
- 清理废弃资源定义

* feat(warehouses): 为仓库函数添加col_offset和layout参数

* refactor: 更新实验配置中的物料类型映射命名

将DispensingStation和ReactionStation的物料类型映射统一更名为PolymerStation,保持命名一致性

* fix: 更新实验配置中的载体名称从6VialCarrier到6StockCarrier

* feat(bioyond): 实现物料创建与入库分离逻辑

将物料同步流程拆分为两个独立阶段:transfer阶段只创建物料,add阶段执行入库
简化状态检查接口,仅返回连接状态

* fix(reaction_station): 修正液体进料烧杯体积单位并增强返回结果

将液体进料烧杯的体积单位从μL改为g以匹配实际使用场景
在返回结果中添加merged_workflow和order_params字段,提供更完整的工作流信息

* feat(dispensing_station): 在任务创建返回结果中添加order_params信息

在create_order方法返回结果中增加order_params字段,以便调用方获取完整的任务参数

* fix(dispensing_station): 修改90%物料分配逻辑从分成3份改为直接使用

原逻辑将主称固体平均分成3份作为90%物料,现改为直接使用main_portion

* feat(bioyond): 添加任务编码和任务ID的输出,支持批量任务创建后的状态监控

* refactor(registry): 简化设备配置中的任务结果处理逻辑

将多个单独的任务编码和ID字段合并为统一的return_info字段
更新相关描述以反映新的数据结构

* feat(工作站): 添加HTTP报送服务和任务完成状态跟踪

- 在graphio.py中添加API必需字段
- 实现工作站HTTP服务启动和停止逻辑
- 添加任务完成状态跟踪字典和等待方法
- 重写任务完成报送处理方法记录状态
- 支持批量任务完成等待和报告获取

* refactor(dispensing_station): 移除wait_for_order_completion_and_get_report功能

该功能已被wait_for_multiple_orders_and_get_reports替代,简化代码结构

* fix: 更新任务报告API错误

* fix(workstation_http_service): 修复状态查询中device_id获取逻辑

处理状态查询时安全获取device_id,避免因属性不存在导致的异常

* fix(bioyond_studio): 改进物料入库失败时的错误处理和日志记录

在物料入库API调用失败时,添加更详细的错误信息打印
同时修正station.py中对空响应和失败情况的判断逻辑

* refactor(bioyond): 优化瓶架载体的分配逻辑和注释说明

重构瓶架载体的分配逻辑,使用嵌套循环替代硬编码索引分配
添加更详细的坐标映射说明,明确PLR与Bioyond坐标的对应关系

* fix(bioyond_rpc): 修复物料入库成功时无data字段返回空的问题

当API返回成功但无data字段时,返回包含success标识的字典而非空字典

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
Co-authored-by: Junhan Chang <changjh@dp.tech>
2025-11-15 02:57:48 +08:00
xyc
d869c14233 add new laiyu liquid driver, yaml and json files (#164) 2025-11-15 02:52:19 +08:00
Harry Liu
24101b3cec change 9320 desk row number to 4 (#106)
* change 9320 desk row number to 4

* Updated 9320 host address

* Updated 9320 host address

* Add **kwargs in classes: PRCXI9300Deck and PRCXI9300Container

* Removed all sample_id in prcxi_9320.json to avoid KeyError

* 9320 machine testing settings

* Typo
2025-11-15 02:52:08 +08:00
tt
3bf8aad4d5 标准化opcua设备接入unilab (#78)
* 初始提交,只保留工作区当前状态

* remove redundant arm_slider meshes

---------

Co-authored-by: Junhan Chang <changjh@dp.tech>
2025-11-15 02:50:52 +08:00
q434343
a599eb70e5 3d sim (#97)
* 修改lh的json启动

* 修改lh的json启动

* 修改backend,做成sim的通用backend

* 修改yaml的地址,3D模型适配网页生产环境

* 添加laiyu硬件连接

* 修改移液枪的状态判断方法,

修改移液枪的状态判断方法,
添加三轴的表定点与零点之间的转换
添加三轴真实移动的backend

* 修改laiyu移液站

简化移动方法,
取消软件限制位置,
修改当值使用Z轴时也需要重新复位Z轴的问题

* 更新lh以及laiyu workshop

1,现在可以直接通过修改backend,适配其他的移液站,主类依旧使用LiquidHandler,不用重新编写

2,修改枪头判断标准,使用枪头自身判断而不是类的判断,

3,将归零参数用毫米计算,方便手动调整,

4,修改归零方式,上电使用机械归零,确定机械零点,手动归零设置工作区域零点方便计算,二者互不干涉

* 修改枪头动作

* 修改虚拟仿真方法

---------

Co-authored-by: zhangshixiang <@zhangshixiang>
Co-authored-by: Junhan Chang <changjh@dp.tech>
2025-11-15 02:50:17 +08:00
lixinyu1011
0bf6994f95 1114物料手册定义教程byxinyu (#165)
* 宜宾奔耀工站deck前端by_Xinyu

* 构建物料教程byxinyu

* 1114物料手册定义教程
2025-11-15 02:49:17 +08:00
Harry Liu
c36f53791c PRCXI Reset Error Correction (#166)
* change 9320 desk row number to 4

* Updated 9320 host address

* Updated 9320 host address

* Add **kwargs in classes: PRCXI9300Deck and PRCXI9300Container

* Removed all sample_id in prcxi_9320.json to avoid KeyError

* 9320 machine testing settings

* Typo

* Rewrite setup logic to clear error code

* 初始化 step_mode 属性
2025-11-15 02:48:46 +08:00
Xuwznln
eb4d2d96c5 bump version to 0.10.9 2025-11-15 02:28:59 +08:00
Xuwznln
8233c41b1d update registry 2025-11-15 02:27:44 +08:00
Xuwznln
0dfd4ce8a8 correct bioyond config 2025-11-15 02:27:32 +08:00
WenzheG
7953b3820e 添加Raman和xrd相关代码 2025-11-15 02:23:09 +08:00
Guangxin Zhang
eed233fa76 封膜仪、撕膜仪、耗材站接口 2025-11-15 02:14:45 +08:00
Xuwznln
0c55147ee4 prcxi example 2025-11-13 17:30:21 +08:00
Xuwznln
ce6267b8e0 fix append_resource 2025-11-13 15:45:41 +08:00
Xuwznln
975e51cd96 fix regularcontainer 2025-11-11 04:44:33 +08:00
Xuwznln
c5056b381c fix cancel error 2025-11-11 04:13:53 +08:00
Xuwznln
c35da65b15 fix resource_get param 2025-11-08 14:40:45 +08:00
Xuwznln
659cf05be6 fix json dumps 2025-11-08 12:08:46 +08:00
Xuwznln
3b8deb4d1d support name change during materials change 2025-11-08 12:08:45 +08:00
Xuwznln
c796615f9f enable slave mode 2025-11-07 21:15:05 +08:00
Xuwznln
a5bad6074f change uuid logger to trace level 2025-11-07 21:15:05 +08:00
Xuwznln
1d3a07a736 correct remove_resource stats 2025-11-07 21:15:03 +08:00
Xuwznln
cc2cd57cdf disable slave connect websocket 2025-11-07 20:39:26 +08:00
Xuwznln
39bb7dc627 adjust with_children param 2025-11-03 16:31:37 +08:00
Xuwznln
0fda155f55 modify devices to use correct executor (sleep, create_task) 2025-11-03 15:49:11 +08:00
Xuwznln
6e3eacd2f0 support sleep and create_task in node 2025-11-03 15:42:12 +08:00
Xuwznln
062f1a2153 fix run async execution error 2025-10-31 21:43:25 +08:00
Junhan Chang
61e8d67800 modify workstation_architecture docs 2025-10-30 17:29:47 +08:00
ZiWei
d0884cdbd8 bioyond_HR (#133)
* feat: Enhance Bioyond synchronization and resource management

- Implemented synchronization for all material types (consumables, samples, reagents) from Bioyond, logging detailed information for each type.
- Improved error handling and logging during synchronization processes.
- Added functionality to save Bioyond material IDs in UniLab resources for future updates.
- Enhanced the `sync_to_external` method to handle material movements correctly, including querying and creating materials in Bioyond.
- Updated warehouse configurations to support new storage types and improved layout for better resource management.
- Introduced new resource types such as reactors and tip boxes, with detailed specifications.
- Modified warehouse factory to support column offsets for naming conventions (e.g., A05-D08).
- Improved resource tracking by merging extra attributes instead of overwriting them.
- Added a new method for updating resources in Bioyond, ensuring better synchronization of resource changes.

* feat: 添加TipBox和Reactor的配置到bottles.yaml

* fix: 修复液体投料方法中的volume参数处理逻辑
2025-10-29 12:10:05 +08:00
ZiWei
545ea45024 修复solid_feeding_vials方法中的volume参数处理逻辑,优化solvents参数的使用条件 2025-10-29 11:24:37 +08:00
ZiWei
b9ddee8f2c 更新液体投料方法,支持通过溶剂信息自动计算体积,添加solvents参数并更新文档描述 2025-10-28 00:12:33 +08:00
ZiWei
a0c5095304 Add batch creation methods for vial and solution tasks
添加批量创建90%10%小瓶投料任务和二胺溶液配置任务的功能,更新相关参数和默认值
2025-10-27 23:55:32 +08:00
Xuwznln
e504505137 use ordering to convert identifier to idx 2025-10-24 02:58:50 +08:00
Xuwznln
4d9d5701e9 use ordering to convert identifier to idx 2025-10-24 02:56:07 +08:00
Xuwznln
6016c4b588 convert identifier to site idx 2025-10-24 02:51:45 +08:00
Xuwznln
be02bef9c4 correct extra key 2025-10-24 02:42:36 +08:00
Xuwznln
e62f0c2585 correct extra key 2025-10-24 02:39:28 +08:00
Xuwznln
b6de0623e2 update extra before transfer 2025-10-24 02:36:47 +08:00
Xuwznln
9d081e9fcd fix multiple instance error 2025-10-24 02:32:33 +08:00
Xuwznln
85a58e3464 fix multiple instance error 2025-10-24 02:29:46 +08:00
Xuwznln
85590672d8 fix multiple instance error 2025-10-24 02:24:44 +08:00
Xuwznln
1d4018196d add resource_tree_transfer func 2025-10-24 02:18:12 +08:00
Xuwznln
5d34f742af fox itemrized carrier assign child resource 2025-10-24 02:09:02 +08:00
Xuwznln
5bef19e6d6 support internal device material transfer 2025-10-23 17:32:09 +08:00
Xuwznln
f816799753 remove extra key 2025-10-23 12:01:12 +08:00
Xuwznln
a45d841769 remove extra key 2025-10-23 11:37:26 +08:00
Xuwznln
7f0b33b3e3 use same callback group 2025-10-23 01:52:33 +08:00
Xuwznln
2006406a24 support material extra 2025-10-22 14:51:07 +08:00
Xuwznln
f94985632b support material extra
support update_resource_site in extra
2025-10-22 14:50:05 +08:00
Xianwei Qi
12ba110569 修改prcxi连线 2025-10-22 14:00:38 +08:00
ZiWei
97212be8b7 Refine descriptions in Bioyond reaction station YAML
Updated and clarified field and operation descriptions in the reaction_station_bioyond.yaml file for improved accuracy and consistency. Changes include more precise terminology, clearer parameter explanations, and standardized formatting for operation schemas.
2025-10-21 23:32:41 +08:00
ZiWei
9bdd42f12f refactor(workstation): 更新反应站参数描述并添加分液站配置文件
修正反应站方法参数描述,使其更准确清晰
添加bioyond_dispensing_station.yaml配置文件
2025-10-21 23:30:45 +08:00
Xianwei Qi
627140da03 prcxi样例图 2025-10-21 21:15:54 +08:00
Xianwei Qi
5ceedb0565 Create example_prcxi.json 2025-10-21 20:38:40 +08:00
Junhan Chang
8c77a20c43 add create_workflow script and test 2025-10-21 20:32:00 +08:00
Xuwznln
3ff894feee add invisible_slots to carriers 2025-10-21 17:51:30 +08:00
ZiWei
fa5896ffdb fix(warehouses): 修正bioyond_warehouse_1x4x4仓库的尺寸参数
调整仓库的num_items_x和num_items_z值以匹配实际布局,并更新物品尺寸参数
2025-10-21 17:15:51 +08:00
Xuwznln
eb504803ac save resource get data. allow empty value for layout and cross_section_type 2025-10-21 16:55:43 +08:00
lixinyu1011
8b0c845661 More decks&plates support for bioyond (#115) 2025-10-21 16:25:54 +08:00
Xuwznln
693873bfa9 save resource get data. allow empty value for layout and cross_section_type 2025-10-21 16:22:52 +08:00
ZiWei
57da2d8da2 refactor(registry): 重构反应站设备配置,简化并更新操作命令
移除旧的自动操作命令,新增针对具体化学操作的命令配置
更新模块路径和配置结构,优化参数定义和描述
2025-10-21 14:52:27 +08:00
ZiWei
8d1fd01259 fix(dispensing_station): 修正物料信息查询方法调用
将直接调用material_id_query改为通过hardware_interface调用,以符合接口设计规范
2025-10-21 13:49:36 +08:00
Xuwznln
388259e64b Update create_resource device_id
(cherry picked from commit bc30f23e34)
2025-10-20 21:47:46 +08:00
ZiWei
2c130e7f37 fix(reaction_station): 为步骤参数添加Value字段传个BY后端 2025-10-20 10:40:51 +08:00
ZiWei
9f7c3f02f9 fix(bioyond/warehouses): 修正仓库尺寸和物品排列参数
调整仓库的x轴和z轴物品数量以及物品尺寸参数,使其符合4x1x4的规格要求
2025-10-19 08:36:40 +08:00
Junhan Chang
19dd80dcdb fix warehouse serialize/deserialize 2025-10-19 08:18:18 +08:00
Junhan Chang
9d5ed627a2 fix bioyond converter 2025-10-19 05:21:41 +08:00
Junhan Chang
2d0ff87bc8 fix itemized_carrier.unassign_child_resource 2025-10-19 05:19:19 +08:00
Junhan Chang
d78475de9a allow not-loaded MSG in registry 2025-10-19 05:18:15 +08:00
Junhan Chang
88ae56806c add layout serializer & converter 2025-10-18 20:53:03 +08:00
Junhan Chang
95dd8beb81 warehouseuse A1-D4; add warehouse layout 2025-10-18 20:27:50 +08:00
ZiWei
4ab3fadbec fix(graphio): 修正bioyond到plr资源转换中的坐标计算错误 2025-10-18 19:25:23 +08:00
ZiWei
229888f834 Fix resource assignment and type mapping issues
Corrects resource assignment in ItemizedCarrier by using the correct spot key from _ordering. Updates graphio to use 'typeName' instead of 'name' for type mapping in resource_bioyond_to_plr. Renames DummyWorkstation to BioyondWorkstation in workstation_http_service for clarity.
2025-10-18 18:55:16 +08:00
ZiWei
b443b39ebf Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-10-18 16:49:22 +08:00
Junhan Chang
0434bbc15b add more enumeration in POSE 2025-10-18 16:46:34 +08:00
ZiWei
5791b81954 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-10-18 16:23:32 +08:00
Junhan Chang
bd51c74fab fix converter in resource_tracker 2025-10-18 16:22:30 +08:00
ZiWei
ba81cbddf8 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-10-18 10:51:04 +08:00
ZiWei
4e92a26057 fix(reaction_station): 清空工作流序列和参数避免重复执行 (#113)
在创建任务后清空工作流序列和参数,防止下次执行时累积重复
2025-10-17 13:41:50 +08:00
ZiWei
c2895bb197 fix(reaction_station): 清空工作流序列和参数避免重复累积 2025-10-17 13:13:54 +08:00
ZiWei
0423f4f452 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-10-17 13:00:32 +08:00
Junhan Chang
41390fbef9 fix resource_get in action 2025-10-17 11:18:47 +08:00
ZiWei
98bdb4e7e4 Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-10-17 03:06:04 +08:00
Xuwznln
30037a077a correct return message 2025-10-17 03:03:08 +08:00
ZiWei
6972680099 Refactor Bioyond workstation and experiment workflow -fix (#111)
* refactor(bioyond_studio): 优化材料缓存加载和参数验证逻辑

改进材料缓存加载逻辑以支持多种材料类型和详细材料处理
更新工作流参数验证中的字段名从key/value改为Key/DisplayValue
移除未使用的merge_workflow_with_parameters方法
添加get_station_info方法获取工作站基础信息
清理实验文件中的注释代码和更新导入路径

* fix: 修复资源移除时的父资源检查问题

在BaseROS2DeviceNode中,移除资源前添加对父资源是否为None的检查,避免空指针异常
同时更新Bottle和BottleCarrier类以支持**kwargs参数
修正测试文件中Liquid_feeding_beaker的大小写拼写错误
2025-10-17 02:59:58 +08:00
ZiWei
9d2c93807d Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-10-17 02:40:33 +08:00
Xuwznln
e728007bc5 cancel upload_registry 2025-10-17 02:34:59 +08:00
ZiWei
9c5ecda7cc Refactor Bioyond workstation and experiment workflow (#110)
Refactored the Bioyond workstation classes to improve parameter handling and workflow management. Updated experiment.py to use BioyondReactionStation with deck and material mappings, and enhanced workflow step parameter mapping and execution logic. Adjusted JSON experiment configs, improved workflow sequence handling, and added UUID assignment to PLR materials. Removed unused station_config and material cache logic, and added detailed docstrings and debug output for workflow methods.
2025-10-17 02:32:13 +08:00
ZiWei
2d26c3fac6 fix: 修复资源移除时的父资源检查问题
在BaseROS2DeviceNode中,移除资源前添加对父资源是否为None的检查,避免空指针异常
同时更新Bottle和BottleCarrier类以支持**kwargs参数
修正测试文件中Liquid_feeding_beaker的大小写拼写错误
2025-10-17 02:23:58 +08:00
ZiWei
f5753afb7c refactor(bioyond_studio): 优化材料缓存加载和参数验证逻辑
改进材料缓存加载逻辑以支持多种材料类型和详细材料处理
更新工作流参数验证中的字段名从key/value改为Key/DisplayValue
移除未使用的merge_workflow_with_parameters方法
添加get_station_info方法获取工作站基础信息
清理实验文件中的注释代码和更新导入路径
2025-10-16 23:58:24 +08:00
Xuwznln
398b2dde3f Close #107
Update doc url.
2025-10-16 14:44:09 +08:00
Xuwznln
62c4135938 Update deploy-docs.yml 2025-10-16 14:28:55 +08:00
Xuwznln
027b4269c4 Update deploy-docs.yml 2025-10-16 14:23:22 +08:00
Xuwznln
3757bd9c58 fix state loading for regular container 2025-10-16 14:04:03 +08:00
Xuwznln
c75b7d5aae fix type conversion 2025-10-16 13:55:38 +08:00
Xuwznln
dfc635189c fix comprehensive_station.json 2025-10-16 13:52:07 +08:00
Xuwznln
d8f3ebac15 fix comprehensive_station.json 2025-10-16 13:46:59 +08:00
Xuwznln
4a1e703a3a support no size init 2025-10-16 13:35:59 +08:00
Xuwznln
55d22a7c29 Update regular container method 2025-10-16 13:33:28 +08:00
Xuwznln
03a4e4ecba fix to plr type error 2025-10-16 13:19:59 +08:00
Xuwznln
2316c34cb5 fix to plr type error 2025-10-16 13:12:21 +08:00
Xuwznln
a8887161d3 pack repo info 2025-10-16 13:06:13 +08:00
Xuwznln
25834f5ba0 provide error info when cant find plr type 2025-10-16 13:05:44 +08:00
Xuwznln
a1e9332b51 temp fix for resource get 2025-10-16 03:20:37 +08:00
Xuwznln
357fc038ef temp fix for resource get 2025-10-16 03:15:56 +08:00
Xuwznln
fd58ef07f3 Update boot example 2025-10-16 02:33:15 +08:00
Xuwznln
93dee2c1dc fix workstation node error 2025-10-16 01:59:48 +08:00
Xuwznln
70fbf19009 fix workstation node error 2025-10-16 01:58:15 +08:00
ZiWei
9149155232 Add logging configuration based on BasicConfig in main function 2025-10-14 21:02:15 +08:00
Xuwznln
1ca1792e3c mount parent uuid 2025-10-14 18:07:59 +08:00
Xuwznln
485e7e8dd2 Fix resource get.
Fix resource parent not found.
Mapping uuid for all resources.
2025-10-14 17:24:41 +08:00
ZiWei
4ddabdcb65 Refactor Bioyond workstation and experiment workflow (#105)
Refactored the Bioyond workstation classes to improve parameter handling and workflow management. Updated experiment.py to use BioyondReactionStation with deck and material mappings, and enhanced workflow step parameter mapping and execution logic. Adjusted JSON experiment configs, improved workflow sequence handling, and added UUID assignment to PLR materials. Removed unused station_config and material cache logic, and added detailed docstrings and debug output for workflow methods.
2025-10-14 02:46:31 +08:00
Xuwznln
a5b0325301 Tip more error log 2025-10-14 02:29:14 +08:00
Xuwznln
50b44938c7 Force confirm uuid 2025-10-14 02:22:39 +08:00
Xuwznln
df0d2235b0 Fix resource tree update 2025-10-14 01:55:29 +08:00
Xuwznln
4e434eeb97 Fix resource tree update 2025-10-14 01:53:04 +08:00
Xuwznln
ca027bf0eb Fix multiple resource error 2025-10-14 01:45:08 +08:00
Xuwznln
635a332b4e Fix workstation deck & children resource dupe 2025-10-14 00:21:37 +08:00
Xuwznln
edf7a117ca Fix workstation deck & children resource dupe 2025-10-14 00:21:16 +08:00
Xuwznln
70b2715996 Fix workstation resource not tracking 2025-10-14 00:05:41 +08:00
Xuwznln
7e8dfc2dc5 Fix children key error 2025-10-13 23:34:17 +08:00
Xuwznln
9b626489a8 Fix children key error 2025-10-13 21:20:42 +08:00
Xuwznln
03fe208743 Raise error when using unsupported type to create ResourceTreeSet 2025-10-13 15:20:30 +08:00
Xuwznln
e913e540a3 Fix ResourceTreeSet load error 2025-10-13 15:16:56 +08:00
Xuwznln
aed39b648d Fix workstation startup
Update registry
2025-10-13 15:01:46 +08:00
Xuwznln
8c8359fab3 Fix one-key installation build for windows 2025-10-13 15:01:46 +08:00
Xuwznln
5d20be0762 Fix conda pack on windows
(cherry picked from commit 2a8e8d014b)
2025-10-13 13:20:20 +08:00
Junhan Chang
09f745d300 modify default config 2025-10-13 10:49:15 +08:00
Junhan Chang
bbcbcde9a4 add plr_to_bioyond, and refactor bioyond stations 2025-10-13 09:41:43 +08:00
hh.(SII)
42b437cdea fix: rename schema field to resource_schema with serialization and validation aliases (#104)
Co-authored-by: ZiWei <131428629+ZiWei09@users.noreply.github.com>
2025-10-13 03:23:04 +08:00
Xuwznln
ffd0f2d26a Complete all one key installation 2025-10-13 03:21:16 +08:00
Xuwznln
32422c0b3d Install conda-pack before pack command 2025-10-13 03:09:44 +08:00
Xuwznln
c44e597dc0 Add conda-pack to base when building one-key installer 2025-10-13 03:01:48 +08:00
Xuwznln
4eef012a8e Fix param error when using mamba run 2025-10-13 02:50:33 +08:00
Xuwznln
ac69452f3c Try fix one-key build on linux 2025-10-13 02:35:06 +08:00
Xuwznln
57b30f627b Try fixx one-key build on linux 2025-10-13 02:24:03 +08:00
Xuwznln
2d2a4ca067 Try fix one-key build on linux
(cherry picked from commit eb1f3fbe1c)
2025-10-13 02:10:20 +08:00
Xuwznln
a2613aad4c fix startup env check.
add auto install during one-key installation
2025-10-13 01:35:28 +08:00
Xuwznln
54f75183ff clean files 2025-10-12 23:26:49 +08:00
Xuwznln
735be067dc fix ony-key script not exist 2025-10-12 23:10:06 +08:00
Xuwznln
0fe62d64f0 Update registry from pr 2025-10-12 23:04:25 +08:00
shiyubo0410
2d4ecec1e1 Update prcxi driver & fix transfer_liquid mix_times (#90)
* Update prcxi driver & fix transfer_liquid mix_times

* fix: correct mix_times type

* Update liquid_handler registry

* test: prcxi.py
2025-10-12 22:56:39 +08:00
lixinyu1011
0f976a1874 电池装配工站二次开发教程(带目录)上传至dev (#94)
* 电池装配工站二次开发教程

* Update intro.md

* 物料教程

* 更新物料教程,json格式注释
2025-10-12 22:56:14 +08:00
ZiWei
b263a7e679 Workshop bj (#99)
* Add LaiYu Liquid device integration and tests

Introduce LaiYu Liquid device implementation, including backend, controllers, drivers, configuration, and resource files. Add hardware connection, tip pickup, and simplified test scripts, as well as experiment and registry configuration for LaiYu Liquid. Documentation and .gitignore for the device are also included.

* feat(LaiYu_Liquid): 重构设备模块结构并添加硬件文档

refactor: 重新组织LaiYu_Liquid模块目录结构
docs: 添加SOPA移液器和步进电机控制指令文档
fix: 修正设备配置中的最大体积默认值
test: 新增工作台配置测试用例
chore: 删除过时的测试脚本和配置文件

* add

* 重构: 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py 并更新所有导入引用

- 使用 git mv 将 LaiYu_Liquid.py 重命名为 laiyu_liquid_main.py
- 更新所有相关文件中的导入引用
- 保持代码功能不变,仅改善命名一致性
- 测试确认所有导入正常工作

* 修复: 在 core/__init__.py 中添加 LaiYuLiquidBackend 导出

- 添加 LaiYuLiquidBackend 到导入列表
- 添加 LaiYuLiquidBackend 到 __all__ 导出列表
- 确保所有主要类都可以正确导入

* 修复大小写文件夹名字
2025-10-12 22:54:38 +08:00
Xuwznln
7c7f1b31c5 Bump version to 0.10.7 2025-10-12 22:52:34 +08:00
Xuwznln
00e668e140 Fix one-key installation path error 2025-10-12 22:49:51 +08:00
Xuwznln
4989f65a0b Fix nested conda pack 2025-10-12 22:45:05 +08:00
Xuwznln
9fa3688196 Update registry. Update uuid loop figure method. Update install docs. 2025-10-12 22:38:04 +08:00
Xuwznln
40fb1ea49c Merge branch 'main' into dev
# Conflicts:
#	.conda/recipe.yaml
#	.github/workflows/conda-pack-build.yml
#	recipes/msgs/recipe.yaml
#	recipes/unilabos/recipe.yaml
#	scripts/verify_installation.py
#	setup.py
#	unilabos/app/main.py
#	unilabos/app/mq.py
#	unilabos/app/register.py
#	unilabos/compile/heatchill_protocol.py
#	unilabos/compile/separate_protocol.py
#	unilabos/config/config.py
#	unilabos/devices/pump_and_valve/runze_backbone.py
#	unilabos/devices/pump_and_valve/runze_multiple_backbone.py
#	unilabos/registry/devices/characterization_chromatic.yaml
#	unilabos/registry/devices/liquid_handler.yaml
#	unilabos/registry/devices/pump_and_valve.yaml
#	unilabos/registry/devices/robot_arm.yaml
#	unilabos/registry/devices/robot_linear_motion.yaml
#	unilabos/registry/devices/work_station.yaml
#	unilabos/registry/registry.py
#	unilabos/registry/resources/organic/workstation.yaml
#	unilabos/resources/plr_additional_res_reg.py
#	unilabos/ros/nodes/base_device_node.py
#	unilabos/ros/nodes/presets/host_node.py
#	unilabos/ros/nodes/presets/workstation.py
#	unilabos/ros/nodes/resource_tracker.py
#	unilabos/utils/environment_check.py
#	unilabos_msgs/package.xml
2025-10-12 22:13:49 +08:00
Xuwznln
18b0bb397e Update recipe.yaml 2025-10-12 22:12:46 +08:00
Xuwznln
65abc5dbf7 Fix environment_check.py 2025-10-12 21:55:34 +08:00
Xuwznln
2455ca15ba Fix unilabos msgs search error 2025-10-12 21:39:06 +08:00
Xuwznln
05a3ff607a Try fix 'charmap' codec can't encode characters in position 16-23: character maps to <undefined> 2025-10-12 21:23:29 +08:00
Xuwznln
ec882df36d Fix FileNotFoundError 2025-10-12 21:00:18 +08:00
Xuwznln
43b992e3eb Update conda-pack-build.yml 2025-10-12 20:47:06 +08:00
Xuwznln
6422fa5a9a Update conda-pack-build.yml (with mamba) 2025-10-12 20:34:49 +08:00
Xuwznln
434b9e98e0 Update conda-pack-build.yml 2025-10-12 20:28:38 +08:00
Xuwznln
040073f430 Add version in __init__.py
Update conda-pack-build.yml
Add create_zip_archive.py
2025-10-12 20:28:04 +08:00
Xuwznln
3d95c9896a update conda-pack-build.yml 2025-10-12 19:41:34 +08:00
Xuwznln
9aa97ed01e update conda-pack-build.yml 2025-10-12 19:38:11 +08:00
Xuwznln
0b8bdf5e0a update conda-pack-build.yml 2025-10-12 19:34:16 +08:00
Xuwznln
299f010754 update conda-pack-build.yml 2025-10-12 19:27:25 +08:00
Xuwznln
15ce0d6883 update conda-pack-build.yml 2025-10-12 19:04:48 +08:00
Xuwznln
dec474e1a7 add auto install script for conda-pack-build.yml
(cherry picked from commit 172599adcf)
2025-10-12 18:53:10 +08:00
Xuwznln
5f187899fc add conda-pack-build.yml 2025-10-12 17:27:59 +08:00
Xuwznln
c8d16c7024 update todo 2025-10-11 13:53:17 +08:00
Junhan Chang
25d46dc9d5 pass the tests 2025-10-11 07:20:34 +08:00
Junhan Chang
88c4d1a9d1 modify bioyond/plr converter, bioyond resource registry, and tests 2025-10-11 04:59:59 +08:00
Xuwznln
81fd8291c5 update todo 2025-10-11 03:38:59 +08:00
Xuwznln
3a11eb90d4 feat: 允许返回非本节点物料,后面可以通过decoration进行区分,就不进行warning了 2025-10-11 03:38:14 +08:00
Xuwznln
387866b9c9 修复同步任务报错不显示的bug 2025-10-11 03:14:12 +08:00
Xuwznln
7f40f141f6 移动内部action以兼容host node 2025-10-11 03:11:17 +08:00
Xuwznln
6fc7ed1b88 过滤本地动作 2025-10-11 03:06:37 +08:00
Xuwznln
93f0e08d75 fix host_node test_resource error 2025-10-11 03:04:15 +08:00
Xuwznln
4b43734b55 fix host_node test_resource error 2025-10-11 02:57:14 +08:00
Xuwznln
174b1914d4 fix host_node error 2025-10-11 02:54:15 +08:00
Xuwznln
704e13f030 新增test_resource动作 2025-10-11 02:53:18 +08:00
Xuwznln
0c42d60cf2 更新transfer_resource_to_another参数,支持spot入参 2025-10-11 02:41:37 +08:00
Xuwznln
df33e1a214 修复transfer_resource_to_another生成 2025-10-11 01:12:56 +08:00
Xuwznln
1f49924966 修复资源添加 2025-10-11 00:58:56 +08:00
Xuwznln
609b6006e8 支持选择器注册表自动生成
支持转运物料
2025-10-11 00:57:22 +08:00
Xuwznln
67c01271b7 add update remove 2025-10-10 20:15:16 +08:00
Xuwznln
a1783f489e Merge remote-tracking branch 'origin/workstation_dev_YB2' into dev
# Conflicts:
#	unilabos/devices/workstation/bioyond_studio/bioyond_rpc.py
#	unilabos/devices/workstation/bioyond_studio/station.py
#	unilabos/resources/graphio.py
2025-10-10 15:38:45 +08:00
Xuwznln
a8f6527de9 修复to_plr_resources 2025-10-10 15:30:26 +08:00
ZiWei
54cfaf15f3 Workstation dev yb2 (#100)
* Refactor and extend reaction station action messages

* Refactor dispensing station tasks to enhance parameter clarity and add batch processing capabilities

- Updated `create_90_10_vial_feeding_task` to include detailed parameters for 90%/10% vial feeding, improving clarity and usability.
- Introduced `create_batch_90_10_vial_feeding_task` for batch processing of 90%/10% vial feeding tasks with JSON formatted input.
- Added `create_batch_diamine_solution_task` for batch preparation of diamine solution, also utilizing JSON formatted input.
- Refined `create_diamine_solution_task` to include additional parameters for better task configuration.
- Enhanced schema descriptions and default values for improved user guidance.
2025-10-10 15:25:50 +08:00
Xuwznln
5610c28b67 更新物料接口 2025-10-10 07:13:59 +08:00
Junhan Chang
cfc1ee6e79 Workstation templates: Resources and its CRUD, and workstation tasks (#95)
* coin_cell_station draft

* refactor: rename "station_resource" to "deck"

* add standardized BIOYOND resources: bottle_carrier, bottle

* refactor and add BIOYOND resources tests

* add BIOYOND deck assignment and pass all tests

* fix: update resource with correct structure; remove deprecated liquid_handler set_group action

* feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92)

* feat: 新威电池测试系统驱动与注册文件

* feat: bring neware driver & battery.json into workstation_dev_YB2

* add bioyond studio draft

* bioyond station with communication init and resource sync

* fix bioyond station and registry

* create/update resources with POST/PUT for big amount/ small amount data

* refactor: add itemized_carrier instead of carrier consists of ResourceHolder

* create warehouse by factory func

* update bioyond launch json

* add child_size for itemized_carrier

* fix bioyond resource io

---------

Co-authored-by: h840473807 <47357934+h840473807@users.noreply.github.com>
Co-authored-by: Xie Qiming <97236197+Andy6M@users.noreply.github.com>
2025-09-30 17:23:13 +08:00
Junhan Chang
1c9d2ee98a fix bioyond resource io 2025-09-30 17:02:38 +08:00
Junhan Chang
3fe8f4ca44 add child_size for itemized_carrier 2025-09-30 12:58:42 +08:00
Junhan Chang
2476821dcc update bioyond launch json 2025-09-30 12:25:21 +08:00
Junhan Chang
7b426ed5ae create warehouse by factory func 2025-09-30 11:57:34 +08:00
Junhan Chang
9bbae96447 Merge branch 'workstation_dev_YB2' of https://github.com/dptech-corp/Uni-Lab-OS into workstation_dev_YB2 2025-09-29 21:02:05 +08:00
Junhan Chang
10aabb7592 refactor: add itemized_carrier instead of carrier consists of ResourceHolder 2025-09-29 20:36:45 +08:00
Junhan Chang
709eb0d91c Merge branch 'dev' of https://github.com/dptech-corp/Uni-Lab-OS into dev 2025-09-27 00:10:59 +08:00
Junhan Chang
14b7d52825 create/update resources with POST/PUT for big amount/ small amount data 2025-09-26 23:25:50 +08:00
Junhan Chang
a5397ffe12 create/update resources with POST/PUT for big amount/ small amount data 2025-09-26 23:25:34 +08:00
LccLink
c6c2da69ba frontend_docs 2025-09-26 23:20:22 +08:00
Junhan Chang
622e579063 fix: update resource with correct structure; remove deprecated liquid_handler set_group action 2025-09-26 20:24:15 +08:00
Junhan Chang
196e0f7e2b fix bioyond station and registry 2025-09-26 08:12:41 +08:00
Junhan Chang
a632fd495e bioyond station with communication init and resource sync 2025-09-25 20:56:29 +08:00
Junhan Chang
a8cc02a126 add bioyond studio draft 2025-09-25 20:36:52 +08:00
Xie Qiming
ad2e1432c6 feat: 将新威电池测试系统驱动与配置文件并入 workstation_dev_YB2 (#92)
* feat: 新威电池测试系统驱动与注册文件

* feat: bring neware driver & battery.json into workstation_dev_YB2
2025-09-25 18:53:04 +08:00
Junhan Chang
c3b9583eac fix: update resource with correct structure; remove deprecated liquid_handler set_group action 2025-09-25 15:27:05 +08:00
Junhan Chang
5c47cd0c8a add BIOYOND deck assignment and pass all tests 2025-09-25 08:41:41 +08:00
Junhan Chang
63ab1af45d refactor and add BIOYOND resources tests 2025-09-25 08:14:48 +08:00
Junhan Chang
a8419dc0c3 add standardized BIOYOND resources: bottle_carrier, bottle 2025-09-25 03:49:07 +08:00
Junhan Chang
34f05f2e25 refactor: rename "station_resource" to "deck" 2025-09-24 10:53:11 +08:00
h840473807
0dc2488f02 coin_cell_station draft 2025-09-23 01:18:04 +08:00
Junhan Chang
f13156e792 fix dict to tree/nested-dict converter 2025-09-23 00:02:45 +08:00
Xuwznln
13fd1ac572 更新物料接口 2025-09-22 17:14:48 +08:00
Guangxin Zhang
f8ef6e0686 Add Defaultlayout 2025-09-19 19:34:25 +01:00
Xuwznln
94a7b8aaca Update install md 2025-09-19 23:02:46 +08:00
Xuwznln
301bea639e 修复protocolnode的兼容性 2025-09-19 22:54:27 +08:00
Xuwznln
4b5a83efa4 修复protocolnode的兼容性 2025-09-19 21:09:07 +08:00
Xuwznln
2889e9be2c 更新所有注册表 2025-09-19 20:28:43 +08:00
Xuwznln
304aebbba7 bump version to 0.10.6 2025-09-19 19:55:34 +08:00
Xuwznln
091c9fa247 Merge branch 'workstation_dev' into dev
# Conflicts:
#	.conda/recipe.yaml
#	recipes/msgs/recipe.yaml
#	recipes/unilabos/recipe.yaml
#	setup.py
#	unilabos/registry/devices/work_station.yaml
#	unilabos/ros/nodes/base_device_node.py
#	unilabos/ros/nodes/presets/protocol_node.py
#	unilabos_msgs/package.xml
2025-09-19 19:52:53 +08:00
Xuwznln
67ca45a240 remove class for resource 2025-09-19 19:33:28 +08:00
Xuwznln
7aab2ea493 fix resource download 2025-09-19 19:17:03 +08:00
Xuwznln
62f3a6d696 PRCXI9320 json 2025-09-19 17:14:43 +08:00
Xuwznln
eb70ad0e18 PRCXI9320 json 2025-09-19 16:52:12 +08:00
Xuwznln
768f43880e PRCXI9320 json 2025-09-19 16:29:18 +08:00
Xuwznln
762c3c737c 重新补全zhida注册表 2025-09-19 11:45:57 +08:00
Xie Qiming
ace98a4472 Feature/xprbalance-zhida (#80)
* feat(devices): add Zhida GC/MS pretreatment automation workstation

* feat(devices): add mettler_toledo xpr balance

* balance
2025-09-19 11:43:25 +08:00
Xuwznln
41eaa88c6f 修复移液站错误的aspirate注册表 2025-09-19 07:05:09 +08:00
Xuwznln
a1a55a2c0a fix resource_add 2025-09-19 06:25:28 +08:00
Xuwznln
2eaa0ca729 try fix add protocol 2025-09-19 06:21:29 +08:00
Xuwznln
6f8f070f40 fix protocol node log_message, added create_resource return value 2025-09-19 05:36:47 +08:00
Xuwznln
da4bd927e0 fix protocol node log_message, added create_resource return value 2025-09-19 05:31:49 +08:00
Xuwznln
01f8816597 update registry with nested obj 2025-09-19 03:44:18 +08:00
Guangxin Zhang
e5006285df 重新规定了版位推荐的入参 2025-09-18 15:27:22 +01:00
Guangxin Zhang
573c724a5c 新增版位推荐功能 2025-09-17 21:07:19 +01:00
Xuwznln
09549d2839 resource_update use resource_add 2025-09-18 03:47:26 +08:00
Junhan Chang
50c7777cea Fix: run-column with correct vessel id (#86)
* fix run_column

* Update run_column_protocol.py

(cherry picked from commit e5aa4d940a)
2025-09-16 14:40:16 +08:00
Xuwznln
4888f02c09 add server timeout 2025-09-16 09:47:06 +08:00
Xuwznln
779c9693d9 refactor ws client 2025-09-16 05:24:42 +08:00
Xuwznln
ffa841a41a fix dupe upload registry 2025-09-15 16:25:41 +08:00
Xuwznln
fc669f09f8 fix import error 2025-09-15 15:55:44 +08:00
Xuwznln
2ca0311de6 移除MQTT,更新launch文档,提供注册表示例文件,更新到0.10.5 2025-09-15 02:39:43 +08:00
Guangxin Zhang
94cdcbf24e 对于PRCXI9320的transfer_group,一对多和多对多 2025-09-15 00:29:16 +08:00
Xuwznln
1cd07915e7 Correct runze pump multiple receive method. 2025-09-14 03:17:50 +08:00
Xuwznln
b600fc666d Correct runze pump multiple receive method. 2025-09-14 03:07:48 +08:00
Xuwznln
9e214c56c1 Update runze_multiple_backbone 2025-09-14 01:04:50 +08:00
Xuwznln
bdf27a7e82 Correct runze multiple backbone 2025-09-14 00:40:29 +08:00
Xuwznln
2493fb9f94 Update runze pump format 2025-09-14 00:22:39 +08:00
Xuwznln
c7a0ff67a9 support multiple backbone
(cherry picked from commit 4771ff2347)
2025-09-14 00:21:54 +08:00
Xuwznln
711a7c65fa remove runze multiple software obtainer
(cherry picked from commit 8bcc92a394)
2025-09-14 00:21:53 +08:00
Xuwznln
cde7956896 runze multiple pump support
(cherry picked from commit 49354fcf39)
2025-09-14 00:21:52 +08:00
Xuwznln
95b6fd0451 新增uat的地址替换 2025-09-11 16:38:17 +08:00
Xuwznln
513e848d89 result_info改为字典类型 2025-09-11 16:24:53 +08:00
Guangxin Zhang
58d1cc4720 Add set_group and transfer_group methods to PRCXI9300Handler and update liquid_handler.yaml 2025-09-10 21:23:15 +08:00
Guangxin Zhang
5676dd6589 Add LiquidHandlerSetGroup and LiquidHandlerTransferGroup actions to CMakeLists 2025-09-10 20:57:22 +08:00
Guangxin Zhang
1ae274a833 Add action definitions for LiquidHandlerSetGroup and LiquidHandlerTransferGroup
- Created LiquidHandlerSetGroup.action with fields for group name, wells, and volumes.
- Created LiquidHandlerTransferGroup.action with fields for source and target group names and unit volume.
- Both actions include response fields for return information and success status.
2025-09-10 20:57:16 +08:00
Xuwznln
22b88c8441 取消labid 和 强制config输入 2025-09-10 20:55:24 +08:00
Xuwznln
81bcc1907d fix: addr param 2025-09-10 20:14:33 +08:00
Xuwznln
8cffd3dc21 fix: addr param 2025-09-10 20:13:44 +08:00
Xuwznln
a722636938 增加addr参数 2025-09-10 20:01:10 +08:00
Xuwznln
f68340d932 修复status密集发送时,消息出错 2025-09-10 18:52:23 +08:00
Xuwznln
361eae2f6d 注册表编辑器 2025-09-07 20:57:48 +08:00
Xuwznln
c25283ae04 主机节点信息等支持自动刷新 2025-09-07 12:53:00 +08:00
Xuwznln
961752fb0d 更新schema的title字段 2025-09-07 00:43:23 +08:00
Xuwznln
55165024dd 修复async错误 2025-09-04 20:19:15 +08:00
Xuwznln
6ddceb8393 修复edge上报错误 2025-09-04 19:31:19 +08:00
Xuwznln
4e52c7d2f4 修复event loop错误 2025-09-04 17:11:50 +08:00
Xuwznln
0b56efc89d 增加handle检测,增加material edge关系上传 2025-09-04 16:46:25 +08:00
Xuwznln
a27b93396a 修复工站的tracker实例追踪失效问题 2025-09-04 02:51:13 +08:00
Xuwznln
2a60a6c27e 修正物料关系上传 2025-09-03 14:20:37 +08:00
Xuwznln
5dda94044d 增加物料关系上传日志 2025-09-03 12:31:25 +08:00
Xuwznln
0cfc6f45e3 增加物料关系上传日志 2025-09-03 12:20:54 +08:00
Xuwznln
831f4549f9 ws protocol 2025-09-02 18:51:27 +08:00
Xuwznln
f4d4eb06d3 ws test version 2 2025-09-02 18:29:05 +08:00
Xuwznln
e3b8164f6b ws test version 1 2025-09-02 14:32:02 +08:00
Xuwznln
78c04acc2e fix: missing job_id key 2025-09-01 16:34:23 +08:00
Xuwznln
cd0428ea78 fix: build 2025-08-30 12:24:28 +08:00
Xuwznln
bdddbd57ba fix: 还原protocol node处理方法 2025-08-30 12:22:46 +08:00
Xuwznln
a312de08a5 fix: station自己的方法注册错误 2025-08-30 12:20:24 +08:00
Xuwznln
68513b5745 feat: action status 2025-08-29 15:38:16 +08:00
Xuwznln
19027350fb feat: workstation example 2025-08-29 02:47:20 +08:00
Xuwznln
bbbdb06bbc feat: websocket test 2025-08-28 19:57:14 +08:00
Xuwznln
cd84e26126 feat: websocket 2025-08-28 14:34:38 +08:00
Junhan Chang
ce5bab3af1 example for use WorkstationBase 2025-08-27 15:20:20 +08:00
Junhan Chang
82d9ef6bf7 uncompleted refactor 2025-08-27 15:19:58 +08:00
Junhan Chang
332b33c6f4 simplify resource system 2025-08-27 11:13:56 +08:00
ZiWei
1ec642ee3a update: Workstation dev 将版本号从 0.10.3 更新为 0.10.4 (#84)
* Add:msgs.action

* update: 将版本号从 0.10.3 更新为 0.10.4
2025-08-27 01:55:28 +08:00
ZiWei
7d8e6d029b Add:msgs.action (#83) 2025-08-27 01:21:13 +08:00
Junhan Chang
5ec8a57a1f refactor: ProtocolNode→WorkstationNode 2025-08-25 22:09:37 +08:00
Junhan Chang
ae3c1100ae refactor: workstation_base 重构为仅含业务逻辑,通信和子设备管理交给 ProtocolNode 2025-08-22 06:43:43 +08:00
Junhan Chang
14bc2e6cda Create workstation_architecture.md 2025-08-21 10:09:57 +08:00
Junhan Chang
9f823a4198 update workstation base 2025-08-21 10:05:58 +08:00
Xuwznln
02c79363c1 feat: add sk & ak 2025-08-20 21:23:08 +08:00
Junhan Chang
227ff1284a add workstation template and battery example 2025-08-19 21:35:27 +08:00
Xuwznln
4b7bde6be5 Update recipe.yaml 2025-08-13 16:36:53 +08:00
Xuwznln
8a669ac35a fix: figure_resource 2025-08-13 13:23:02 +08:00
Junhan Chang
a1538da39e use call_async in all service to avoid deadlock 2025-08-13 04:25:51 +08:00
Xuwznln
0063df4cf3 fix: prcxi import error 2025-08-12 19:31:52 +08:00
Xuwznln
e570ba4976 临时兼容错误的driver写法 2025-08-12 19:20:53 +08:00
Xuwznln
e8c1f76dbb fix protocol node 2025-08-12 17:08:59 +08:00
Junhan Chang
f791c1a342 fix filter protocol 2025-08-12 16:48:32 +08:00
Junhan Chang
ea60cbe891 bugfixes on organic protocols 2025-08-12 14:50:01 +08:00
Junhan Chang
eac9b8ab3d fix and remove redundant info 2025-08-11 20:52:03 +08:00
Xuwznln
573bcf1a6c feat: 新增use_remote_resource参数 2025-08-11 16:09:27 +08:00
Junhan Chang
50e93cb1af fix all protocol_compilers and remove deprecated devices 2025-08-11 15:01:04 +08:00
Xuwznln
fe1a029a9b feat: 优化protocol node节点运行日志 2025-08-10 17:31:44 +08:00
Junhan Chang
662c063f50 fix pumps and liquid_handler handle 2025-08-07 20:59:57 +08:00
Xuwznln
01cbbba0b3 feat: workstation example 2025-08-07 15:26:17 +08:00
Xuwznln
e6c556cf19 add: prcxi res
fix: startup slow
2025-08-07 01:26:33 +08:00
Xuwznln
0605f305ed fix: prcxi_res 2025-08-06 23:06:22 +08:00
Xuwznln
37d8108ec4 fix: discard_tips 2025-08-06 19:27:10 +08:00
Xuwznln
6081dac561 fix: discard_tips error 2025-08-06 19:18:35 +08:00
Xuwznln
5b2d066127 fix: drop_tips not using auto resource select 2025-08-06 19:10:04 +08:00
ZiWei
06e66765e7 feat: 添加ChinWe设备控制类,支持串口通信和电机控制功能 (#79) 2025-08-06 18:49:37 +08:00
Xuwznln
98ce360088 feat: add trace log level 2025-08-04 20:27:02 +08:00
Xuwznln
5cd0f72fbd modify default discovery_interval to 15s 2025-08-04 14:10:43 +08:00
Xuwznln
343f394203 fix: working dir error when input config path
feat: report publish topic when error
2025-08-04 14:04:31 +08:00
Junhan Chang
46aa7a7bd2 fix: workstation handlers and vessel_id parsing 2025-08-04 10:24:42 +08:00
Junhan Chang
a66369e2c3 Cleanup registry to be easy-understanding (#76)
* delete deprecated mock devices

* rename categories

* combine chromatographic devices

* rename rviz simulation nodes

* organic virtual devices

* parse vessel_id

* run registry completion before merge

---------

Co-authored-by: Xuwznln <18435084+Xuwznln@users.noreply.github.com>
2025-08-03 11:21:37 +08:00
33 changed files with 5641 additions and 1224 deletions

View File

@@ -3,7 +3,7 @@
package:
name: unilabos
version: 0.11.3
version: 0.11.1
source:
path: ../../unilabos
@@ -54,7 +54,7 @@ requirements:
- pymodbus
- matplotlib
- pylibftdi
- uni-lab::unilabos-env ==0.11.3
- uni-lab::unilabos-env ==0.11.1
about:
repository: https://github.com/deepmodeling/Uni-Lab-OS

View File

@@ -2,7 +2,7 @@
package:
name: unilabos-env
version: 0.11.3
version: 0.11.1
build:
noarch: generic

View File

@@ -3,7 +3,7 @@
package:
name: unilabos-full
version: 0.11.3
version: 0.11.1
build:
noarch: generic
@@ -11,7 +11,7 @@ build:
requirements:
run:
# Base unilabos package (includes unilabos-env)
- uni-lab::unilabos ==0.11.3
- uni-lab::unilabos ==0.11.1
# Documentation tools
- sphinx
- sphinx_rtd_theme

View File

@@ -5,98 +5,9 @@ description: Guide for adding new devices to Uni-Lab-OS (接入新设备). Uses
# 添加新设备到 Uni-Lab-OS
本 Skill 是自包含的设备接入指南,不依赖外部文档。迁移给别人时,只复制 `.cursor/skills/add-device/SKILL.md` 即可获得核心规则、模板、验证方式和常见错误清单
**第一步:** 使用 Read 工具读取 `docs/ai_guides/add_device.md`,获取完整的设备接入指南
开始实现前,仍应搜索 `unilabos/devices/` 获取同类别已有设备的接口、参数名、状态字符串和返回值风格作为参考。
---
## 接入工作流
按下面顺序推进,并在工作中维护进度:
```text
设备接入进度:
- [ ] 1. 确定设备类别(物模型)和对外单位
- [ ] 2. 确定通信协议
- [ ] 3. 收集指令协议SDK、厂商文档、寄存器表、HTTP API、用户口述
- [ ] 4. 对齐同类设备接口(搜索 unilabos/devices/
- [ ] 5. 创建驱动 unilabos/devices/<category>/<file>.py
- [ ] 6. 验证可导入、注册表扫描、启动测试
- [ ] 7. 如需要,配置实验图文件
```
## 设备类别(物模型)
优先使用已有类别。只有确实无法归类时才使用 `custom`
| 类别 ID | 说明 | 标准属性 | 标准动作 |
|---|---|---|---|
| `temperature` | 加热、冷却、温控 | `temp`, `temp_target`, `status` | `set_temperature`, `stop` |
| `pump_and_valve` | 泵、阀门、注射器 | 见子类型表 | 见子类型表 |
| `motor` | 电机、步进马达 | `position`, `status` | `enable`, `move_position`, `move_speed`, `stop` |
| `heaterstirrer` | 加热搅拌一体机 | `temp`, `stir_speed`, `status` | `set_temperature`, `stir`, `stop` |
| `balance` | 天平、称重 | `weight`, `unit`, `status` | `tare`, `read_weight` |
| `sensor` | 传感器(液位、温度等) | `value`, `level`, `status` | `read_value`, `set_threshold` |
| `liquid_handling` | 液体处理机器人 | `status`, `deck_state` | `transfer_liquid`, `aspirate`, `dispense` |
| `robot_arm` | 机械臂 | `arm_pose`, `arm_status` | `moveit_task`, `pick_and_place` |
| `workstation` | 工作站、组合设备 | `workflow_sequence`, `material_info` | `create_order`, `scheduler_start`, `scheduler_stop` |
| `virtual` | 虚拟、模拟设备 | 按模拟的真实设备定义 | 按模拟的真实设备定义 |
| `custom` | 不属于以上类别 | 用户自定义 | 用户自定义 |
`pump_and_valve` 子类型:
| 子类型 | 最小通用属性 | 最小通用动作 | 单位约定 |
|---|---|---|---|
| 注射泵syringe pump | `status`, `valve_position`, `position` | `initialize`, `set_valve_position`, `set_position`, `pull_plunger`, `push_plunger`, `stop_operation` | 体积=mL, 速度=mL/s |
| 电磁阀solenoid valve | `status`, `valve_position` | `open`, `close`, `set_valve_position` | 无 |
| 蠕动泵peristaltic pump | `status`, `speed` | `start`, `stop`, `set_speed` | 流速=mL/min |
对外暴露的属性和动作参数必须使用用户友好的物理单位mL、ul、degC、RPM 等),硬件原始值转换放在驱动内部。
## 通信协议和指令来源
先确认通信方式,再确认具体指令协议。物模型只定义设备“应该做什么”,不会告诉你硬件“具体发什么字节/请求”。
| 协议 | 常用 config 参数 | 常用依赖 | 现有抽象 |
|---|---|---|---|
| Serial (RS232/RS485) | `port`, `baudrate`, `timeout` | `pyserial` | 直接使用 `serial.Serial` |
| Modbus RTU | `port`, `baudrate`, `slave_id` | `pymodbus` | `device_comms/modbus_plc/` |
| Modbus TCP | `host`, `port`, `slave_id` | `pymodbus` | `device_comms/modbus_plc/` |
| TCP Socket | `host`, `port`, `timeout` | stdlib | 直接使用 `socket` |
| HTTP API | `url`, `token`, `timeout` | `requests` | `device_comms/rpc.py` |
| OPC UA | `url` | `opcua` | `device_comms/opcua_client/` |
| 无通信(虚拟) | 无 | 无 | 在动作中模拟行为 |
必须从以下来源之一获得指令细节:
| 来源 | 处理方式 |
|---|---|
| 现成 SDK/驱动代码 | 读取代码,提取指令逻辑,包装进 Uni-Lab-OS 类 |
| 协议文档/手册 | 解析命令、响应、校验、寄存器、错误码 |
| 用户口述 | 按描述实现指令编解码,标出不确定点 |
| 标准协议 | 使用标准实现,例如 Modbus 寄存器表、SCPI |
| 虚拟设备 | 跳过硬件通信,在动作方法中维护模拟状态 |
## 对齐已有实现(强制)
实现前必须搜索 `unilabos/devices/` 中同类别设备:
- 参数名必须与已有设备保持一致;动作方法参数名是接口契约,不要随意改成 `volume_ml``target_temp_c` 这类新名字。
- `status` 字符串值要和同类设备一致,优先使用英文稳定值,例如 `Idle``Running``Error`
- 状态属性用 `@property` + `@topic_config()` 明确声明。
- 返回值使用结构化 dict至少包含 `success`,需要给前端展示的信息放在 `message``data``error` 等字段。
## 架构选择
| 场景 | 推荐方式 |
|---|---|
| 简单设备 | 纯 Python 类 + `@device` |
| 工作站/组合设备 | `WorkstationBase` 或项目内已有工作站模式 |
| 液体处理 | `LiquidHandlerAbstract` / PyLabRobot 相关模式 |
| Modbus 设备 | 复用 `device_comms/modbus_plc/` 或项目内 Modbus 示例 |
| OPC UA 设备 | 复用 `device_comms/opcua_client/` |
| 外部独立包 | 使用 `create-device-package` skill |
该指南包含设备类别(物模型)列表、通信协议模板、常见错误检查清单等。搜索 `unilabos/devices/` 获取已有设备的实现参考。
---
@@ -176,29 +87,6 @@ Args:
- 如果只写 `param: 参数说明``title` 会兜底为字段名,`description` 使用参数说明。
- 如果没有写参数文档,生成器也会兜底补齐 `title=<字段名>``description=""`,但新设备应优先写清楚显示名和说明。
### 特殊参数类型ResourceSlot / DeviceSlot
需要前端选择资源或设备时用特殊类型注解registry 会自动生成 `placeholder_keys`
```python
from typing import List
from unilabos.registry.placeholder_type import DeviceSlot, ResourceSlot
@action(description="转移液体")
def transfer(self, source: ResourceSlot, target: ResourceSlot, volume_ul: float) -> dict:
"""
Args:
source[源资源]: 源容器或孔位。
target[目标资源]: 目标容器或孔位。
volume_ul[体积(ul)]: 转移体积。
"""
return {"success": True}
@action(description="同步设备")
def sync_devices(self, devices: List[DeviceSlot]) -> dict:
return {"success": True, "count": len(devices)}
```
### @topic_config — 状态属性配置
```python
@@ -306,154 +194,3 @@ class MyDevice:
- `post_init``@not_action` 标记,参数类型标注为 `BaseROS2DeviceNode`
- 运行时状态存储在 `self.data` 字典中
- 设备文件放在 `unilabos/devices/<category>/` 目录下
---
## 通信实现片段
Serial 文本指令:
```python
def _send_command(self, cmd: str) -> str:
self.ser.write(f"{cmd}\r\n".encode())
return self.ser.readline().decode().strip()
```
RS-485 响应解析要先定位帧头,不要用硬编码索引直接解析原始响应:
```python
def _normalize_response(self, raw: str, start_marker: str = "/") -> str:
pos = raw.find(start_marker)
return raw[pos:] if pos >= 0 else raw
```
自定义二进制帧:
```python
def _build_frame(self, func_code: int, data: bytes) -> bytes:
frame = bytearray([0xFE, func_code]) + bytearray(data)
checksum = sum(frame[1:]) % 256
frame.append(checksum)
return bytes(frame)
```
Modbus 寄存器映射:
```python
REGISTER_MAP = {
"temp_target": {"addr": 0x000B, "scale": 10},
}
def set_temperature(self, temp: float, **kwargs) -> bool:
reg = REGISTER_MAP["temp_target"]
value = int(float(temp) * reg["scale"]) & 0xFFFF
self.client.write_register(reg["addr"], value, slave=self.slave_id)
self.data["temp_target"] = temp
return True
```
HTTP API 映射:
```python
API_MAP = {
"set_temperature": {
"method": "POST",
"endpoint": "/api/temperature",
"body_key": "target",
},
}
```
SDK 封装:
```python
from my_device_sdk import DeviceController
class MyDevice:
def __init__(self, device_id=None, config=None, **kwargs):
self.config = config or {}
self.controller = DeviceController(port=self.config.get("port", "COM1"))
```
---
## 验证
无需手写注册表 YAML。`@device` 装饰器 + AST 扫描会在启动或检查时生成注册表条目。
```bash
# 1. 模块可导入
python -c "from unilabos.devices.<category>.<file> import <ClassName>"
# 2. 启动测试
unilab -g <graph>.json
# 3. 仅检查注册表
unilab --check_mode --skip_env_check
```
仅在旧代码无 `@device`、需要覆盖特殊字段、或做 `--complete_registry` 旧设备补全时,才考虑 YAML。新设备默认不要手写 YAML。
## 图文件节点模板
实验图 JSON 中的 `class` 对应 `@device(id=...)``config` 会传入 `__init__``config` 字典:
```json
{
"id": "my_device_1",
"name": "我的设备",
"children": [],
"parent": null,
"type": "device",
"class": "my_device",
"position": {"x": 0, "y": 0, "z": 0},
"config": {
"port": "/dev/ttyUSB0",
"baudrate": 9600
},
"data": {}
}
```
工作站需要同时配置 `deck``children`
```json
{
"nodes": [
{
"id": "my_station",
"type": "device",
"class": "my_workstation",
"children": ["my_deck"],
"config": {},
"deck": {
"data": {
"_resource_child_name": "my_deck",
"_resource_type": "unilabos.resources.my_module:MyDeck"
}
}
},
{
"id": "my_deck",
"type": "deck",
"class": "MyDeckClass",
"parent": "my_station",
"config": {"type": "MyDeckClass", "setup": true}
}
]
}
```
---
## 常见错误清单
- 缺少 `@device`:设备不会被 AST 扫描发现。
- 只有 `@property` 没有 `@topic_config()`:属性不会稳定广播到 `status_types`
- `post_init` 没有 `@not_action`:会被误暴露为动作。
- `self.data = {}`:空字典会导致属性读取和 schema 初始数据不稳定,必须预填充每个状态键。
- 动作参数重命名:不要把同类设备已有的 `volume` 改成 `volume_ml`,参数名是接口契约。
- `status` 使用中文或临时文本:前端和工作流依赖稳定英文状态值。
- async 方法中使用 `time.sleep()`:应使用 `await self._ros_node.sleep(seconds)`
- 硬编码串口响应索引RS-485 响应前可能有噪声字节,应先定位帧头。
- 把硬件寄存器单位暴露给用户:对外使用物理单位,驱动内部做 scale 转换。

View File

@@ -10,8 +10,7 @@ description: Operate Virtual Workbench via REST API — prepare materials, move
- **device_id**: `virtual_workbench`
- **Python 源码**: `unilabos/devices/virtual/workbench.py`
- **设备类**: `VirtualWorkbench`
- **当前纳入动作**: 5 个`auto-prepare_materials`, `auto-move_to_heating_station`, `auto-start_heating`, `auto-move_to_output`, `transfer`
- **暂跳过动作**: `manual_confirm`、扣电测试 `test`(需要启用时先从最新注册表重新提取 schema
- **动作**: 6`auto-prepare_materials`, `auto-move_to_heating_station`, `auto-start_heating`, `auto-move_to_output`, `transfer`, `manual_confirm`
- **设备描述**: 模拟工作台,包含 1 个机械臂(每次操作 2s独占锁和 3 个加热台(每次加热 60s可并行
### 典型工作流程
@@ -152,8 +151,7 @@ curl -s -X POST "$BASE/api/v1/lab/mcp/run/action" \
| `auto-start_heating` | `UniLabJsonCommand` |
| `auto-move_to_output` | `UniLabJsonCommand` |
| `transfer` | `UniLabJsonCommandAsync` |
> `manual_confirm` 和扣电测试 `test` 当前不纳入本 skill 的推荐操作范围;不要基于历史 JSON 直接调用,需先重新生成并校验 schema。
| `manual_confirm` | `UniLabJsonCommand` |
### 10. 查询任务状态
@@ -227,9 +225,11 @@ curl -s -X PUT "$BASE/api/v1/edge/material/node" \
| `transfer` | `resource` | ResourceSlot | 待转移物料数组 |
| `transfer` | `target_device` | DeviceSlot | 目标设备路径 |
| `transfer` | `mount_resource` | ResourceSlot | 目标孔位数组 |
| `manual_confirm` | `resource` | ResourceSlot | 确认用物料数组 |
| `manual_confirm` | `target_device` | DeviceSlot | 确认用目标设备 |
| `manual_confirm` | `mount_resource` | ResourceSlot | 确认用目标孔位数组 |
> `prepare_materials`、`move_to_heating_station`、`start_heating`、`move_to_output` 这 4 个动作**无 Slot 字段**,参数为纯数值/整数。
> `manual_confirm` 先跳过,不维护其 Slot 字段表。
---
@@ -270,13 +270,3 @@ prepare_materials (count=5)
```
创建节点时,`prepare_materials` 的 5 个 output handle`channel_1` ~ `channel_5`)分别连接到 5 个 `move_to_heating_station` 节点的 `material_input` handle。每个 `move_to_heating_station``heating_station_output``material_number_output` 连接到对应 `start_heating``station_id_input``material_number_input`
`start_heating` 完成后还需要继续连接到 `move_to_output`,否则加热完成的物料不会移出加热台:
| source action | source handle | target action | target handle | 传递参数 |
| ------------- | ------------- | ------------- | ------------- | -------- |
| `auto-prepare_materials` | `channel_N` | `auto-move_to_heating_station` | `material_input` | `material_number` |
| `auto-move_to_heating_station` | `heating_station_output` | `auto-start_heating` | `station_id_input` | `station_id` |
| `auto-move_to_heating_station` | `material_number_output` | `auto-start_heating` | `material_number_input` | `material_number` |
| `auto-start_heating` | `heating_done_station` | `auto-move_to_output` | `output_station_input` | `station_id` |
| `auto-start_heating` | `heating_done_material` | `auto-move_to_output` | `output_material_input` | `material_number` |

View File

@@ -1,8 +1,6 @@
# Action Index — virtual_workbench
当前纳入 5 个动作,按功能分类。每个动作的完整 JSON Schema 在 `actions/<name>.json`
暂跳过:`manual_confirm`、扣电测试 `test`。这两个动作需要启用时,先从最新 `req_device_registry_upload.json` 重新提取 schema 并校验参数。
6 个动作,按功能分类。每个动作的完整 JSON Schema 在 `actions/<name>.json`
---
@@ -62,18 +60,17 @@
---
## 暂跳过动作
## 人工确认
### `manual_confirm`
创建人工确认节点,等待用户手动确认后继续(含物料转移上下文)。当前先不纳入推荐操作范围。
创建人工确认节点,等待用户手动确认后继续(含物料转移上下文)
- **action_type**: `UniLabJsonCommand`
- **Schema**: [`actions/manual_confirm.json`](actions/manual_confirm.json)
- **状态**: 暂跳过。源码参数已包含扣电测试相关字段,历史 JSON 可能过期;需要启用时重新提取 schema。
### `test`
启动扣电测试。当前先不纳入本 skill。
- **状态**: 暂跳过。需要启用时从注册表生成 `actions/test.json` 后再补充索引。
- **核心参数**: `resource`, `target_device`, `mount_resource`, `timeout_seconds`, `assignee_user_ids`
- **占位符字段**:
- `resource`**ResourceSlot**,物料数组
- `target_device`**DeviceSlot**,目标设备路径
- `mount_resource`**ResourceSlot**,目标孔位数组
- `assignee_user_ids``unilabos_manual_confirm` 类型

View File

@@ -25,7 +25,7 @@ jobs:
fetch-depth: 0
- name: Setup Miniforge
uses: conda-incubator/setup-miniconda@v4
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-version: latest
use-mamba: true

View File

@@ -43,7 +43,7 @@ jobs:
platform: linux-64
env_file: unilabos-linux-64.yaml
script_ext: sh
- os: macos-15-intel # Intel x86_64
- os: macos-15 # Intel (via Rosetta)
platform: osx-64
env_file: unilabos-osx-64.yaml
script_ext: sh
@@ -86,7 +86,7 @@ jobs:
- name: Setup Miniforge (with mamba)
if: steps.should_build.outputs.should_build == 'true'
uses: conda-incubator/setup-miniconda@v4
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-version: latest
use-mamba: true

View File

@@ -51,7 +51,7 @@ jobs:
fetch-depth: 0
- name: Setup Miniforge (with mamba)
uses: conda-incubator/setup-miniconda@v4
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-version: latest
use-mamba: true
@@ -84,7 +84,7 @@ jobs:
- name: Setup Pages
id: pages
uses: actions/configure-pages@v6
uses: actions/configure-pages@v5
if: |
github.event.workflow_run.head_branch == 'main' ||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
@@ -105,7 +105,7 @@ jobs:
test -f docs/_build/html/index.html && echo "✓ index.html exists" || echo "✗ index.html missing"
- name: Upload build artifacts
uses: actions/upload-pages-artifact@v5
uses: actions/upload-pages-artifact@v4
if: |
github.event.workflow_run.head_branch == 'main' ||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
@@ -125,4 +125,4 @@ jobs:
steps:
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v5
uses: actions/deploy-pages@v4

View File

@@ -63,7 +63,7 @@ jobs:
- os: ubuntu-latest
platform: linux-64
env_file: unilabos-linux-64.yaml
- os: macos-15-intel # Intel x86_64
- os: macos-15 # Intel (via Rosetta)
platform: osx-64
env_file: unilabos-osx-64.yaml
- os: macos-latest # ARM64
@@ -101,11 +101,10 @@ jobs:
- name: Setup Miniforge
if: steps.should_build.outputs.should_build == 'true'
uses: conda-incubator/setup-miniconda@v4
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-version: latest
use-mamba: true
python-version: '3.11.14'
channels: conda-forge,robostack-staging
channel-priority: strict
activate-environment: build-env
@@ -115,22 +114,24 @@ jobs:
- name: Install rattler-build and anaconda-client
if: steps.should_build.outputs.should_build == 'true'
run: |
mamba install -n build-env --override-channels -c conda-forge rattler-build anaconda-client -y
mamba install --override-channels -c conda-forge rattler-build anaconda-client -y
- name: Show environment info
if: steps.should_build.outputs.should_build == 'true'
run: |
conda info
conda list -n build-env | grep -E "(rattler-build|anaconda-client)"
conda run -n build-env rattler-build --version
conda run -n build-env anaconda --version
conda list | grep -E "(rattler-build|anaconda-client)"
echo "Platform: ${{ matrix.platform }}"
echo "OS: ${{ matrix.os }}"
- name: Build conda package
if: steps.should_build.outputs.should_build == 'true'
run: |
conda run -n build-env rattler-build build -r ./recipes/msgs/recipe.yaml --target-platform ${{ matrix.platform }} -c robostack -c robostack-staging -c conda-forge
if [[ "${{ matrix.platform }}" == "osx-arm64" ]]; then
rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
else
rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
fi
- name: List built packages
if: steps.should_build.outputs.should_build == 'true'
@@ -170,5 +171,5 @@ jobs:
run: |
for package in $(find ./output -name "*.conda"); do
echo "Uploading $package to unilab organization..."
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
done

View File

@@ -59,7 +59,7 @@ jobs:
include:
- os: ubuntu-latest
platform: linux-64
- os: macos-15-intel # Intel x86_64
- os: macos-15 # Intel (via Rosetta)
platform: osx-64
- os: macos-latest # ARM64
platform: osx-arm64
@@ -94,11 +94,10 @@ jobs:
- name: Setup Miniforge
if: steps.should_build.outputs.should_build == 'true'
uses: conda-incubator/setup-miniconda@v4
uses: conda-incubator/setup-miniconda@v3
with:
miniforge-version: latest
use-mamba: true
python-version: '3.11.14'
channels: conda-forge,robostack-staging,uni-lab
channel-priority: strict
activate-environment: build-env
@@ -108,15 +107,13 @@ jobs:
- name: Install rattler-build and anaconda-client
if: steps.should_build.outputs.should_build == 'true'
run: |
mamba install -n build-env --override-channels -c conda-forge rattler-build anaconda-client -y
mamba install --override-channels -c conda-forge rattler-build anaconda-client -y
- name: Show environment info
if: steps.should_build.outputs.should_build == 'true'
run: |
conda info
conda list -n build-env | grep -E "(rattler-build|anaconda-client)"
conda run -n build-env rattler-build --version
conda run -n build-env anaconda --version
conda list | grep -E "(rattler-build|anaconda-client)"
echo "Platform: ${{ matrix.platform }}"
echo "OS: ${{ matrix.os }}"
echo "Build full package: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.build_full == 'true' }}"
@@ -131,7 +128,7 @@ jobs:
if: steps.should_build.outputs.should_build == 'true'
run: |
echo "Building unilabos-env (conda environment dependencies)..."
conda run -n build-env rattler-build build -r .conda/environment/recipe.yaml --target-platform ${{ matrix.platform }} -c uni-lab -c robostack-staging -c conda-forge
rattler-build build -r .conda/environment/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
- name: Upload unilabos-env to Anaconda.org (if enabled)
if: |
@@ -143,7 +140,7 @@ jobs:
run: |
echo "Uploading unilabos-env to uni-lab organization..."
for package in $(find ./output -name "unilabos-env*.conda"); do
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
done
- name: Build unilabos (with pip package)
@@ -151,7 +148,7 @@ jobs:
run: |
echo "Building unilabos package..."
# 如果已上传到 Anaconda从 uni-lab channel 获取 unilabos-env否则从本地 output 获取
conda run -n build-env rattler-build build -r .conda/base/recipe.yaml --target-platform ${{ matrix.platform }} -c uni-lab -c robostack-staging -c conda-forge --channel ./output
rattler-build build -r .conda/base/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
- name: Upload unilabos to Anaconda.org (if enabled)
if: |
@@ -163,7 +160,7 @@ jobs:
run: |
echo "Uploading unilabos to uni-lab organization..."
for package in $(find ./output -name "unilabos-0*.conda" -o -name "unilabos-[0-9]*.conda"); do
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
done
- name: Build unilabos-full - Only when explicitly requested
@@ -173,7 +170,7 @@ jobs:
github.event.inputs.build_full == 'true'
run: |
echo "Building unilabos-full package on ${{ matrix.platform }}..."
conda run -n build-env rattler-build build -r .conda/full/recipe.yaml --target-platform ${{ matrix.platform }} -c uni-lab -c robostack-staging -c conda-forge --channel ./output
rattler-build build -r .conda/full/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
- name: Upload unilabos-full to Anaconda.org (if enabled)
if: |
@@ -184,7 +181,7 @@ jobs:
run: |
echo "Uploading unilabos-full to uni-lab organization..."
for package in $(find ./output -name "unilabos-full*.conda"); do
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
done
- name: List built packages

View File

@@ -1,611 +0,0 @@
# PLC 通信标准与设备驱动编写指南(基于 AI4M 工站)
> 本文档以 `unilabos/devices/workstation/AI4M`(水凝胶检测工站)为参考实现,
> 介绍如何将 PLC 控制的实验设备接入 Uni-Lab-OS包含通信协议选型、节点表标准、
> 通信基类、设备驱动、Registry 配置以及调试方法。
>
> 阅读对象:负责现场调试与设备接入的同学。
---
## 0. 总览:一台 PLC 设备从硬件到云端的链路
```
PLC西门子 / 倍福 / 三菱 / 汇川 / 国产 PLC ...
│ 各家 PLC 私有协议S7 / Modbus / EtherCAT ...
┌──────────┴──────────┐
│ OPC UA Server │ ← 统一在 PLC 侧或独立网关上配置
│ (内置或 KEPServer
└──────────┬──────────┘
│ OPC UA over TCP标准协议
┌──────────┴──────────┐
│ Uni-Lab 设备驱动 │ ← 本教程主体
│ AI4MDevice │
│ ├─ base_opcua_client.py 通信基类
│ ├─ opcua_nodes_*.csv 节点表(标准)
│ └─ AI4M.py 动作函数
└──────────┬──────────┘
│ ROS2 Action / 云端 HTTP
实验记录本 / 云端调度
```
**统一约定**:所有 PLC 设备**只暴露 OPC UA 接口**给 Uni-LabPC 端不直接处理 S7 / Modbus 等底层协议。
这是 Uni-Lab 在工站类设备上的 PLC 通信标准。
---
## 1. 为什么选 OPC UA 作为标准?
| 维度 | 自研 TCP/串口协议 | Modbus | **OPC UA** |
|---|---|---|---|
| 厂家无关 | ✗ | 部分 | **✓** |
| 自带类型系统 | ✗ | ✗(裸寄存器) | **Boolean/Int16/Float...** |
| 命名空间 / 节点树 | ✗ | ✗(地址=魔数) | **✓(带名字、可分组)** |
| 订阅推送 | ✗ | ✗ | **DataChange Notification** |
| 鉴权 / 加密 | 自己造 | ✗ | **✓** |
| 与 PLC 工程师沟通成本 | 高 | 中 | **低(按变量名沟通)** |
实际接入时PLC 工程师只需要在 PLC 侧把约定的"上位通讯变量"暴露到 OPC UA Server
我们在 PC 侧就能用 `节点名 + 数据类型` 直接读写,不用管底层是 S7 还是 Modbus。
---
## 2. 节点表标准:`opcua_nodes_xxx.csv`
PLC 侧暴露的所有变量统一**用一张 CSV 表**描述,这是 PC 端和 PLC 端**唯一的接口契约**。
位置示例:`unilabos/devices/workstation/AI4M/opcua_nodes_AI4M.csv`
### 2.1 列定义
| 列名 | 是否必填 | 说明 |
|---|---|---|
| `Name` | ✅ | 节点名PLC 工程师在 PLC 项目中真实使用的变量名,通常是中文/原始名) |
| `EnglishName` | 推荐 | 英文别名,**PC 端代码全部用这个名字**调用 |
| `NodeType` | ✅ | `VARIABLE`(变量)或 `METHOD`方法AI4M 全部用变量 |
| `DataType` | ✅ | `BOOLEAN` / `INT16` / `INT32` / `FLOAT` / `DOUBLE` / `STRING` ... |
| `NodeLanguage` | 推荐 | `Chinese` / `English`,配合 `EnglishName` 做映射 |
| `NodeId` | ✅ | OPC UA 标准 NodeId格式 `ns=<namespace>;s=<string>``ns=<n>;i=<int>` |
### 2.2 真实样例(节选自 `opcua_nodes_AI4M.csv`
| Name | EnglishName | NodeType | DataType | NodeLanguage | NodeId |
|---|---|---|---|---|---|
| 机器人空闲 | `robot_ready` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|机器人空闲` |
| 机器人取烧杯编号 | `robot_pick_beaker_id` | VARIABLE | INT16 | Chinese | `ns=4;s=上位通讯变量\|机器人取烧杯编号` |
| 检测1请求参数 | `station_1_request_params` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|检测1请求参数` |
| 检测1工艺完成 | `station_1_process_complete` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|检测1工艺完成` |
| 磁力搅拌参数设置_C[0].搅拌速度 | `mag_stirrer_c0_stir_speed` | VARIABLE | INT16 | Chinese | `ns=4;s=上位通讯变量\|磁力搅拌参数设置_C[0].搅拌速度` |
| 报警复位 | `alarm_reset` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|报警复位` |
### 2.3 设计规范(必读)
1. **命名按"角色-编号-属性"分层**,便于代码批量寻址:
- `mag_stirrer_c{0..4}_stir_speed`(搅拌仪 0~4 的搅拌速度)
- `station_{1..3}_process_complete`(检测站 1~3 的完成信号)
- `robot_rack_pick_beaker_{1..5}_complete`(取烧杯 1~5 的完成信号)
这样在驱动里可以直接 `f"mag_stirrer_c{idx}_stir_speed"` 拼出节点名。
2. **数据类型与 PLC 侧严格一致**
- `BOOL``BOOLEAN``INT/WORD``INT16/UINT16``DINT``INT32``REAL``FLOAT`
- 类型不一致会触发 `BadTypeMismatch`,写入失败。
3. **NodeId 必须从 PLC 工程或 OPC UA Server 中导出**,不要自己拼。
常见格式:
- 西门子 1500`ns=4;s=上位通讯变量|<变量名>`
- 倍福 TwinCAT`ns=4;s=PLC1.MAIN.<变量名>`
- KEPServerEX`ns=2;s=Channel1.Device1.<Tag>`
4. **每个工站一个独立 CSV**,不要共用。
AI4M 中真机用 `opcua_nodes_AI4M.csv`,仿真用 `opcua_nodes_AI4M_sim.csv`
---
## 3. 通信基类架构
文件:`unilabos/devices/workstation/AI4M/base_opcua_client.py`
整个通信层分两层:
```
BaseOpcUaClient # 最小可用:连接 + 节点注册 + 读写 + 方法调用
│ 继承
OpcUaClientWithSubscription # 生产可用:+ 订阅推送 + 缓存 + 自动重连
│ 继承
AI4MDevice # 业务驱动:在它之上写设备动作函数
```
### 3.1 `BaseOpcUaClient` 核心能力
```python
class BaseOpcUaClient(UniversalDriver):
client: Optional[Client] = None
_node_registry: Dict[str, OpcUaNodeBase] = {} # name -> Variable/Method
_name_mapping: Dict[str, str] = {} # 英文名 -> 中文名
_reverse_mapping: Dict[str, str] = {} # 中文名 -> 英文名
_found_node_objects: Dict[str, Any] = {} # 缓存 ua.Node 用于订阅
@classmethod
def load_csv(cls, file_path) -> Tuple[List[OpcUaNode], dict, dict]: ...
def register_node_list(self, node_list) -> "BaseOpcUaClient": ...
def use_node(self, name) -> OpcUaNodeBase: ...
def read_node(self, node_name: str) -> str: ... # 返回 JSON
def write_node(self, json_input: str) -> str: ...
def call_method(self, node_name, *args) -> Tuple[Any, bool]: ...
```
它做的事情可以归纳为四步:
1. **`load_csv`**:读取节点表,建立 `Name ↔ EnglishName` 双向映射。
2. **`register_node_list`**:把节点登记进 `_variables_to_find` 待查找列表。
3. **`_connect``_find_nodes`**:连上 OPC UA 后,按 `NodeId` 把每个节点解析成 `Variable` / `Method` 对象,放进 `_node_registry`
4. **`use_node(name)`**:业务代码取节点的唯一入口,**支持中英文混用**,找不到会自动重试一次。
### 3.2 `OpcUaClientWithSubscription` 增强能力
`BaseOpcUaClient` 基础上提供三个生产环境必备的能力:
#### a) 订阅缓存(高频读零开销)
```python
def _setup_subscriptions(self):
self._subscription = self.client.create_subscription(
self._subscription_interval, # 默认 500ms
SubscriptionHandler(self),
)
for node_name, node in self._node_registry.items():
if node.type == NodeType.VARIABLE and node.node_id:
handle = self._subscription.subscribe_data_change(ua_node)
self._subscription_handles[node_name] = handle
```
当 PLC 侧变量变化时,`datachange_notification` 回调会把新值写进 `self._node_values[name]`
后续 `get_node_value` 优先读缓存——**业务代码可以放心地写 `while not self.get_node_value(...): time.sleep(1)` 而不用担心 OPC UA 频繁请求**。
#### b) 智能缓存的 `get_node_value`
```python
def get_node_value(self, name, use_cache=True, force_read=False):
# 1. 中英文名归一化
chinese_name = self._name_mapping.get(name, name)
# 2. force_read=True 强制透传到 OPC UA Server
if force_read: ...
# 3. 命中订阅推送 → 直接返回缓存
# 4. 命中按需读 + 未过期cache_timeout=5s→ 返回缓存
# 5. 否则发起 read 并更新缓存
```
#### c) 连接监控 + 自动重连
后台线程每 30s 调一次 `client.get_namespace_array()` 探活,断线则自动 `disconnect → connect → 重新订阅`,最多重试 5 次。
### 3.3 数据类型 / 节点类型
`unilabos/device_comms/opcua_client/node/uniopcua.py`
```python
class DataType(Enum):
BOOLEAN = VariantType.Boolean
INT16 = VariantType.Int16
INT32 = VariantType.Int32
FLOAT = VariantType.Float
STRING = VariantType.String
# ...
class NodeType(Enum):
VARIABLE = NodeClass.Variable
METHOD = NodeClass.Method
OBJECT = NodeClass.Object
```
`Variable.write()` 内部会按 `DataType` 做强制类型转换,
所以 CSV 里的 `DataType` 列就是"PC 端转换写入值的类型说明书"。
---
## 4. 编写设备驱动:以 `AI4MDevice` 为例
文件:`unilabos/devices/workstation/AI4M/AI4M.py`
### 4.1 继承通信基类,最小骨架
```python
from typing import Optional
from unilabos.devices.workstation.AI4M.base_opcua_client import OpcUaClientWithSubscription
class AI4MDevice(OpcUaClientWithSubscription):
def __init__(
self,
url: str, # opc.tcp://192.168.1.10:4840
deck: Optional[AI4M_deck] = None, # 物料台面(资源树)
csv_path: str = None, # 节点表 CSV
username: str = None,
password: str = None,
use_subscription: bool = True,
cache_timeout: float = 5.0,
subscription_interval: int = 500,
*args, **kwargs,
):
super().__init__(
url=url, username=username, password=password,
use_subscription=use_subscription,
cache_timeout=cache_timeout,
subscription_interval=subscription_interval,
*args, **kwargs,
)
# 物料台面初始化(见教程 4. 物料系统)
self.deck = deck or AI4M_deck(setup=True)
self._robot_lock = threading.Lock()
# 关键:加载节点表
if csv_path:
self.load_nodes_from_csv(csv_path)
```
`load_nodes_from_csv` 会一次性完成:解析 CSV → 注册节点 → 解析 NodeId → 建立订阅,
**之后整个驱动都通过 `self.get_node_value(name)` / `self.set_node_value(name, value)` 操作 PLC**
### 4.2 PLC 通信的核心模式握手协议Handshake
PLC 编程的本质是"扫描周期 + 状态机"PC 端**绝对不能用 fire-and-forget 的方式发指令**。
和 PLC 配合的标准模式是 **"PC 写指令 → PC 等待 PLC 回执 → PC 复位指令"**。
AI4M 中所有 `trigger_*` 函数都遵循以下三种握手范式之一:
#### 范式 A脉冲触发 + 完成信号(最常用)
```python
def trigger_init(self) -> dict:
# ① 复位上一轮残留
self.set_node_value("alarm_reset", True); time.sleep(1.0)
self.set_node_value("alarm_reset", False)
self.set_node_value("manual_auto_switch", False)
# ② 等待 PLC 退出自动模式
while self.get_node_value("auto_mode"):
time.sleep(1.0)
# ③ 发起初始化脉冲True → False
self.set_node_value("initialize", True); time.sleep(1.0)
self.set_node_value("initialize", False)
# ④ 等待 PLC 给出完成信号
while not self.get_node_value("init finished"):
time.sleep(1.0)
return {"message": "设备初始化完成"}
```
要点:
- **"PC 写一个 BOOL 拉高再拉低"** 模拟脉冲PLC 用上升沿触发动作。
- **`get_node_value` 要在 while 循环里轮询**,配合订阅缓存基本无压力。
- **每个动作必须有"开始"和"完成"两个独立的 BOOL 节点**,不能复用。
#### 范式 B参数下发 + 请求/已执行/完成 三步握手(带数据的工艺)
```python
def trigger_station_process(self, station_id: int, mag_stir_speed: int, ...):
request_node = f"station_{station_id}_request_params"
params_received_node = f"station_{station_id}_params_received"
start_node = f"station_{station_id}_start"
complete_node = f"station_{station_id}_process_complete"
# ① PC 复位三个状态位(避免上一轮影响)
self._reset_station_process_flags(station_id)
# ② 等 PLC 主动请求参数PLC 准备好了才接收)
while not self.get_node_value(request_node):
time.sleep(1.0)
# ③ PC 下发参数注意PLC 内部数组是 0-basedPC 暴露给用户是 1-based
station_idx = station_id - 1
self.set_node_value(f"mag_stirrer_c{station_idx}_stir_speed", mag_stir_speed)
self.set_node_value(f"mag_stirrer_c{station_idx}_heat_temp", mag_stir_heat_temp)
self.set_node_value(f"mag_stirrer_c{station_idx}_time_set", mag_stir_time_set)
self.set_node_value(f"syringe_pump_{station_idx}_abs_position_set", syringe_pump_abs_pos)
# ④ PC 通知 PLC "参数已就绪",等 PLC 回复"已执行"
self.set_node_value(start_node, True)
while not self.get_node_value(params_received_node):
time.sleep(1.0)
# ⑤ 等 PLC 完成整个工艺
while not self.get_node_value(complete_node):
time.sleep(5.0)
self.set_node_value(start_node, False) # 复位,方便下一轮
return {"station_id": station_id, "message": "..."}
```
四个状态位的语义:
| 信号 | 方向 | 含义 |
|---|---|---|
| `station_X_request_params` | **PLC → PC** | "我准备好了,把参数给我" |
| `station_X_start` | **PC → PLC** | "参数我已经写好了,开干" |
| `station_X_params_received` | **PLC → PC** | "参数我已经吃下了" |
| `station_X_process_complete` | **PLC → PC** | "工艺已经做完" |
**这是 PLC 通信教科书级别的标准范式**,所有带数据下发的动作都建议照抄。
#### 范式 C编号下发 + 编号对应的完成信号(多目标互锁)
```python
def trigger_robot_pick_beaker(self, pick_beaker_id: int, place_station_id: int = None, ...):
# ① 等机器人空闲(互锁)
while not self.get_node_value("robot_ready"):
time.sleep(1.0)
# ② 阶段一:下发"取哪一杯"编号 + 等"取这一杯完成"
pick_complete_node = f"robot_rack_pick_beaker_{pick_beaker_id}_complete"
self.set_node_value("robot_pick_beaker_id", pick_beaker_id)
while not self.get_node_value(pick_complete_node):
time.sleep(1.0)
# ③ 阶段二:下发"放到哪个工站"编号 + 等"放完成"
place_complete_node = f"robot_place_station_{place_station_id}_complete"
self._reset_station_process_flags(place_station_id)
self.set_node_value("robot_place_station_id", place_station_id)
while not self.get_node_value(place_complete_node):
time.sleep(1.0)
```
要点:
- **同一个动作的多个目标用"编号变量 + 编号对应的完成信号"实现**,不要每个目标都开一个开始位。
- **配合 Python 端 `threading.Lock()` 做软互锁**,避免多个线程争抢机器人。
- **每个阶段有独立的完成信号**,串行等待,不能合并。
### 4.3 一些容易踩坑的细节
1. **节点名映射**
`set_node_value("alarm_reset", True)` 实际写入的是 CSV 中文名 `报警复位`
`get_node_value` 同理。**业务代码全部用 EnglishName**,不要直接用中文。
2. **PLC 数组索引和 PC 不一致**
AI4M 里 PC 暴露 `station_id ∈ {1, 2, 3}`,但 PLC 内部数组是 `C[0..2]`
驱动里要做 `station_idx = station_id - 1`**这种映射只在驱动层做一次**
不要让上层registry / 实验记录本)感知。
3. **订阅模式下 BOOL 节点的边沿同步**
订阅有 ~500ms 延迟。如果你刚 `set_node_value(x, True)` 就立刻 `get_node_value(x)`
读到的可能还是 `False`(订阅还没推回来)。
解决方案:**写完后用 `force_read=True` 透传一次** 或加一段 `time.sleep`
4. **永远不要忘记复位**
`start` 拉 True 后必须有地方拉回 False否则下一轮 PLC 上升沿不触发。
AI4M 在 `_reset_station_process_flags` 中统一做:
```python
def _reset_station_process_flags(self, station_id: int) -> None:
self.set_node_value(f"station_{station_id}_process_complete", False)
self.set_node_value(f"station_{station_id}_start", False)
self.set_node_value(f"station_{station_id}_params_received", False)
```
5. **耗时长的等待 sleep 加大**
工艺等待用 `time.sleep(5.0)`,机器人等待用 `time.sleep(1.0)`,初始化等待 `time.sleep(1.0)`
不要全部用 0.1s 轮询,会把日志刷爆。
---
## 5. 把驱动接到 Uni-LabRegistry + Graph
### 5.1 Registry YAML动作 schema
文件:`unilabos/registry/devices/AI4M_station.yaml`
```yaml
AI4M_station:
category: [AI4M_station]
class:
module: unilabos.devices.workstation.AI4M.AI4M:AI4MDevice # ← 入口类
type: python
action_value_mappings:
auto-trigger_init:
schema:
description: 设备初始化...
properties:
goal: { properties: {}, required: [], type: object }
result:
properties: { message: { type: string } }
required: [message]
type: object
type: object
type: UniLabJsonCommand
auto-trigger_station_process:
always_free: true
schema:
description: 执行检测工艺流程
properties:
goal:
properties:
station_id: { type: integer, description: 检测编号 1-3 }
mag_stir_stir_speed: { type: integer }
mag_stir_heat_temp: { type: integer }
mag_stir_time_set: { type: integer }
syringe_pump_abs_position_set:{ type: integer }
required: [station_id, mag_stir_stir_speed, mag_stir_heat_temp,
mag_stir_time_set, syringe_pump_abs_position_set]
type: object
result: { ... }
type: UniLabJsonCommand
init_param_schema:
config:
type: object
required: [url]
properties:
url: { type: string, description: OPC UA 服务器地址 }
csv_path: { type: string, description: 节点配置 CSV 路径 }
deck: { type: string, description: 资源树配置 }
username: { type: string }
password: { type: string }
use_subscription: { type: boolean, default: true }
cache_timeout: { type: number, default: 5.0 }
subscription_interval: { type: integer, default: 500 }
```
规则总结:
- `class.module` 指向驱动类(`module:ClassName`)。
- `action_value_mappings` 中的 key 形如 `auto-<方法名>`,对应驱动里的同名 Python 方法。
- `schema.goal` 自动转成 ROS2 Action 的 goal 消息,`schema.result` 转 result。
- `init_param_schema.config` 对应 `__init__` 的入参,**所有需要现场改的参数都要列出来**(最重要的就是 `url` 和 `csv_path`)。
- `always_free: true` 表示该动作不占用工站独占锁(多检测站可并发执行)。
### 5.2 Graph JSON实例化
文件:`unilabos/devices/workstation/AI4M/AI4M.json`
```json
{
"nodes": [
{
"id": "AI4M_station",
"name": "AI4M_station",
"type": "device",
"class": "AI4M_station",
"children": ["AI4M_deck"],
"parent": null,
"config": {
"url": "opc.tcp://192.168.1.10:4840",
"csv_path": "opcua_nodes_AI4M.csv",
"deck": {
"data": {
"_resource_child_name": "AI4M_deck",
"_resource_type": "unilabos.devices.workstation.AI4M.decks:AI4M_deck"
}
}
}
},
{
"id": "AI4M_deck",
"type": "deck",
"class": "AI4M_deck",
"parent": "AI4M_station",
"config": { "type": "AI4M_deck" }
}
]
}
```
要点:
- `class` 必须和 Registry YAML 的顶层 key 完全一致(`AI4M_station`)。
- `config` 字段**逐字传给驱动 `__init__`**,所以 Graph JSON = "现场参数表"。
- 多套相同设备时拷贝一份,把 `id` / `url` 改掉即可(参考 `AI4M002_station`)。
### 5.3 启动命令(来自 `start.md`
```cmd
# 真机
python unilabos/app/main.py -g unilabos/devices/workstation/AI4M/AI4M.json `
--ak <ak> --sk <sk> --upload_registry --addr <api_url> --disable_browser
# 仿真KEPServerEX 跑在本机 49320 端口)
python unilabos/app/main.py -g unilabos/devices/workstation/AI4M/AI4Msim.json `
--ak <ak> --sk <sk> --upload_registry --disable_browser
```
`--upload_registry` 会把 `AI4M_station.yaml` 的 schema 上传到云端,
之后实验记录本就能看到所有 `auto-*` 动作。
---
## 6. 调试方法
### 6.1 用 KEPServerEX 仿真 PLC
不带 PLC 的开发机上,可以用 KEPServerEX或 `python-opcua` 自建 server模拟。
AI4M 提供了一份仿真节点表 `opcua_nodes_AI4M_sim.csv`**只改 NodeId 不改语义**
所以驱动代码无需任何改动即可在本机调试。
### 6.2 单独跑驱动(不开 ROS
在驱动文件末尾的 `if __name__ == '__main__':` 段:
```python
if __name__ == '__main__':
A4 = AI4MDevice(
url="opc.tcp://192.168.1.10:4840",
csv_path="opcua_nodes_AI4M.csv",
)
A4.trigger_init()
print("初始化完成")
A4.trigger_robot_pick_beaker(1, 1)
```
**新动作上线前一定要在这里裸跑一遍**,确认握手时序正确,再往上接 ROS。
### 6.3 看日志判断卡在哪
`base_opcua_client.py` 的日志已经覆盖了所有关键节点:
```
✓ 客户端已连接!
✓ 找到变量节点: 'robot_ready', NodeId: ns=4;s=...
✓ 已订阅节点: robot_ready
✓ 节点查找完成:所有 142 个节点均已找到
```
如果看到 `⚠ 以下 N 个节点未找到`**99% 是 CSV 里的 NodeId 写错了**,回去对一下 PLC 工程导出的 NodeId。
### 6.4 检查节点是否能直接读写
```python
# 透传读,绕过订阅缓存
A4.get_node_value("robot_ready", force_read=True)
# 直接读 JSON 形式(适合从 HTTP/调试面板调)
A4.read_node("robot_ready")
# 写
A4.set_node_value("alarm_reset", True)
A4.write_node('{"node_name": "alarm_reset", "value": false}')
```
---
## 7. 接入新 PLC 设备的 Checklist
接到一台新工站时,按下面顺序做就能保证不漏:
- [ ] 1. 让 PLC 工程师把上位通讯变量整理到 OPC UA Server导出 NodeId 清单。
- [ ] 2. 在 `unilabos/devices/workstation/<设备名>/` 下新建目录,复制 `AI4M/base_opcua_client.py` 不动。
- [ ] 3. 整理 `opcua_nodes_<设备名>.csv`6 列填齐,并补上 `EnglishName`。
- [ ] 4. 在该目录写设备驱动 `<设备名>.py`,继承 `OpcUaClientWithSubscription`
- [ ] `__init__` 调用 `super().__init__` + `self.load_nodes_from_csv(csv_path)`。
- [ ] 每个动作函数用范式 A/B/C 写握手协议。
- [ ] 每个动作函数都返回 `dict`,至少含 `message` 字段。
- [ ] 5. 在 `unilabos/registry/devices/` 下新建 `<设备名>_station.yaml`,配置 `init_param_schema` 和 `action_value_mappings`。
- [ ] 6. 在该目录新建 `<设备名>.json`Graph填好 `url` 和 `csv_path`。
- [ ] 7. 用 `if __name__ == '__main__':` 单独跑驱动确认握手 OK。
- [ ] 8. 用 `python unilabos/app/main.py -g <Graph> --upload_registry ...` 上线,到实验记录本下发动作回归。
---
## 8. 参考实现速查
| 关注点 | 在 AI4M 中看哪里 |
|---|---|
| OPC UA 通信基类 | `base_opcua_client.py` |
| 节点定义类型系统 | `unilabos/device_comms/opcua_client/node/uniopcua.py` |
| 节点表 CSV 标准 | `opcua_nodes_AI4M.csv` |
| 设备驱动入口类 | `AI4M.py: AI4MDevice` |
| 握手范式 A脉冲+完成) | `AI4M.py: trigger_init` |
| 握手范式 B请求/参数/完成) | `AI4M.py: trigger_station_process` |
| 握手范式 C编号+完成) | `AI4M.py: trigger_robot_pick_beaker` |
| 自动模式批量参数下发 | `AI4M.py: download_auto_params` |
| Registry schema | `unilabos/registry/devices/AI4M_station.yaml` |
| Graph 实例化 | `AI4M.json` / `AI4Msim.json` |
| 启动命令 | `start.md` |

View File

@@ -1,6 +1,6 @@
package:
name: ros-humble-unilabos-msgs
version: 0.11.3
version: 0.11.1
source:
path: ../../unilabos_msgs
target_directory: src

View File

@@ -1,6 +1,6 @@
package:
name: unilabos
version: "0.11.3"
version: "0.11.1"
source:
path: ../..

View File

@@ -4,7 +4,7 @@ package_name = 'unilabos'
setup(
name=package_name,
version='0.11.3',
version='0.11.1',
packages=find_packages(),
include_package_data=True,
install_requires=['setuptools'],

View File

@@ -1 +1 @@
__version__ = "0.11.3"
__version__ = "0.11.1"

View File

@@ -59,7 +59,6 @@ class JobAddReq(BaseModel):
task_id: str = Field(examples=["task_id"], description="task uuid (auto-generated if empty)", default="")
job_id: str = Field(examples=["job_id"], description="goal uuid (auto-generated if empty)", default="")
node_id: str = Field(examples=["node_id"], description="node uuid", default="")
notebook_id: str = Field(examples=["notebook_id"], description="notebook uuid", default="")
server_info: dict = Field(
examples=[{"send_timestamp": 1717000000.0}],
description="server info (auto-generated if empty)",

View File

@@ -10,170 +10,29 @@ import shutil
import sys
_PATCH_MARKER = "# UniLabOS DLL Patch"
_PATCH_END_MARKER = "# End UniLabOS DLL Patch"
# 75 = EX_TEMPFAIL: 临时失败、重试即可,避免与业务退出码冲突
_RESTART_EXIT_CODE = 75
def _build_dll_patch(lib_bin: str, preload_pyd: str = "") -> str:
"""生成一段加在目标文件顶部的 DLL 加载补丁源码。
- 始终把 ``lib_bin`` 加入 DLL 搜索路径,并把 handle 挂在模块属性上,
防止 GC 清掉搜索路径(``os.add_dll_directory`` 的句柄被回收时
目录会被移除)。
- 可选地用 ``ctypes.CDLL`` 预加载一个 .pyd把它的依赖 DLL 提前装入
进程内存,作为 ``rclpy._rclpy_pybind11`` 这类首次加载点的兜底。
"""
# 用 repr() 序列化路径Python 解析 repr 的结果会还原成原始字符串,
# 不需要也不能再叠加 raw-string 前缀(叠了反而会让 \\ 变成两个反斜杠)。
lines = [
_PATCH_MARKER,
"import os as _ulab_os",
f"_ulab_p = {lib_bin!r}",
'if hasattr(_ulab_os, "add_dll_directory") and _ulab_os.path.isdir(_ulab_p):',
" try: _UNILAB_DLL_HANDLE = _ulab_os.add_dll_directory(_ulab_p)",
" except Exception: _UNILAB_DLL_HANDLE = None",
]
if preload_pyd:
lines.extend(
[
"import ctypes as _ulab_ctypes",
f"try: _ulab_ctypes.CDLL({preload_pyd!r})",
"except Exception: pass",
]
)
lines.append(_PATCH_END_MARKER)
return "\n".join(lines) + "\n"
def _apply_dll_patch(file_path: str, lib_bin: str, preload_pyd: str = "") -> bool:
"""把 DLL 补丁前置到 ``file_path``。文件不存在或已打过补丁则返回 False。"""
if not os.path.isfile(file_path):
return False
with open(file_path, "r", encoding="utf-8") as f:
content = f.read()
if _PATCH_MARKER in content:
return False
shutil.copy2(file_path, file_path + ".bak")
with open(file_path, "w", encoding="utf-8") as f:
f.write(_build_dll_patch(lib_bin, preload_pyd) + content)
return True
def _print_restart_banner(patched_files):
"""打印重启提示并以 EX_TEMPFAIL 退出。
- 不使用 ANSI 颜色码Windows 旧版 cmd / PowerShell 5 默认不开 VT 处理,
会把 ``\\033[1;33m`` 当做字面字符显示,反而让用户看不到正文。
- 同时写入 stderr 与 stdout某些上层 launcher / supervisor 只重定向
其中一路,写两遍能保证用户至少看到一份。
- 写入前防御性把流切到 UTF-8 with replace``main.py`` 里已经做过一次,
但本模块也可能被绕过 ``main.py`` 的代码路径直接 importreconfigure
失败也只是退回 errors=replace不影响整体流程。
"""
if sys.platform == "win32":
for _stream in (sys.stdout, sys.stderr):
try:
_stream.reconfigure(encoding="utf-8", errors="replace") # type: ignore[attr-defined]
except (AttributeError, OSError):
pass
bar = "#" * 78
files_lines = [f"[UniLabOS] - {p}" for p in patched_files]
body = "\n".join(
[
"",
bar,
bar,
"##",
"## [UniLabOS] Windows + conda 下检测到 DLL 加载失败,已自动打补丁。",
"## [UniLabOS] DLL load failure detected on Windows + conda;",
"## [UniLabOS] the following files have been auto-patched:",
"##",
*[f"## {line}" for line in files_lines],
"##",
"## [UniLabOS] 当前进程的 rclpy 状态已损坏,补丁需要在新进程才生效。",
"## [UniLabOS] The current process is unusable; the patch only takes",
"## [UniLabOS] effect on a fresh process.",
"##",
"## >>> 请重新运行刚才的命令 / Please re-run the same command. <<<",
"##",
bar,
bar,
"",
]
)
for stream in (sys.stderr, sys.stdout):
try:
stream.write(body)
stream.flush()
except Exception:
try:
print(body, file=stream)
except Exception:
pass
sys.exit(_RESTART_EXIT_CODE)
def patch_rclpy_dll_windows():
"""在 Windows + conda 环境下修复 rclpy / rosidl typesupport 的 DLL 加载。
背景conda 安装的 ros 系列包,其原生扩展依赖 ``$CONDA_PREFIX/Library/bin``
下的 DLL只有 conda 环境被正确激活、且 PATH 中含 ``Library/bin`` 时,
``os.add_dll_directory`` 才能找到它们。当从快捷方式 / IDE / 子进程 /
没激活的 shell 启动 ``unilab`` 时,会出现 ``DLL load failed``。
本函数会:
1) 修补 ``rclpy/impl/implementation_singleton.py`` —— rclpy 自身的 C 扩展入口;
2) 修补 ``rpyutils/add_dll_directories.py`` —— 所有 ``*_s__rosidl_typesupport_c.pyd``
``geometry_msgs`` / ``std_msgs`` / ``sensor_msgs`` 等)的统一加载入口。
打完补丁后**必须重启进程**才能生效(当前进程的 rclpy 已经发生过
``ImportError``,子模块仍处于损坏状态)。因此函数会主动退出,并在
stdout/stderr 同时打印明显的重启提示,避免用户被后续报错淹没。
"""
"""在 Windows + conda 环境下 rclpy 打 DLL 加载补丁"""
if sys.platform != "win32" or not os.environ.get("CONDA_PREFIX"):
return
try:
import rclpy # noqa: F401
import rclpy
return
except ImportError as e:
if not str(e).startswith("DLL load failed"):
return
cp = os.environ["CONDA_PREFIX"]
lib_bin = os.path.join(cp, "Library", "bin")
site_packages = os.path.join(cp, "Lib", "site-packages")
if not os.path.isdir(lib_bin):
impl = os.path.join(cp, "Lib", "site-packages", "rclpy", "impl", "implementation_singleton.py")
pyd = glob.glob(os.path.join(cp, "Lib", "site-packages", "rclpy", "_rclpy_pybind11*.pyd"))
if not os.path.exists(impl) or not pyd:
return
patched = []
# 1) rclpy 自身的入口
rclpy_impl = os.path.join(site_packages, "rclpy", "impl", "implementation_singleton.py")
rclpy_pyd_matches = glob.glob(os.path.join(site_packages, "rclpy", "_rclpy_pybind11*.pyd"))
rclpy_pyd = rclpy_pyd_matches[0] if rclpy_pyd_matches else ""
if rclpy_pyd and _apply_dll_patch(rclpy_impl, lib_bin, preload_pyd=rclpy_pyd):
patched.append(rclpy_impl)
# 2) rpyutils —— 所有 rosidl typesupport pyd 的加载点;放在 rclpy 之后
# 例geometry_msgs/geometry_msgs_s__rosidl_typesupport_c.pyd
rpyutils_dll = os.path.join(site_packages, "rpyutils", "add_dll_directories.py")
if _apply_dll_patch(rpyutils_dll, lib_bin):
patched.append(rpyutils_dll)
if not patched:
# 已经打过补丁但 rclpy 仍然加载失败:原因不是缺 DLL 搜索路径,
# 不要再次打补丁污染文件,让上层看到真实的 ImportError。
return
_print_restart_banner(patched)
with open(impl, "r", encoding="utf-8") as f:
content = f.read()
lib_bin = os.path.join(cp, "Library", "bin").replace("\\", "/")
patch = f'# UniLabOS DLL Patch\nimport os,ctypes\nos.add_dll_directory("{lib_bin}") if hasattr(os,"add_dll_directory") else None\ntry: ctypes.CDLL("{pyd[0].replace(chr(92),"/")}")\nexcept: pass\n# End Patch\n'
shutil.copy2(impl, impl + ".bak")
with open(impl, "w", encoding="utf-8") as f:
f.write(patch + content)
patch_rclpy_dll_windows()

View File

@@ -320,7 +320,6 @@ def job_add(req: JobAddReq) -> JobData:
action_name=action_name,
task_id=task_id,
job_id=job_id,
notebook_id=req.notebook_id,
device_action_key=device_action_key,
)

View File

@@ -59,7 +59,6 @@ class QueueItem:
action_name: str
task_id: str
job_id: str
notebook_id: str
device_action_key: str
next_run_time: float = 0 # 下次执行时间戳
retry_count: int = 0 # 重试次数
@@ -72,7 +71,6 @@ class JobInfo:
job_id: str
task_id: str
device_id: str
notebook_id: str
action_name: str
device_action_key: str
status: JobStatus
@@ -541,10 +539,7 @@ class MessageProcessor:
self.reconnect_count += 1
backoff = WSConfig.reconnect_interval
logger.info(
"[MessageProcessor] 即将在 %s 秒后重连 (已尝试 %s/%s)",
backoff,
self.reconnect_count,
WSConfig.max_reconnect_attempts,
f"[MessageProcessor] 即将在 {backoff} 秒后重连 (已尝试 {self.reconnect_count}/{WSConfig.max_reconnect_attempts})"
)
await asyncio.sleep(backoff)
else:
@@ -708,7 +703,6 @@ class MessageProcessor:
action_name = data.get("action_name", "")
task_id = data.get("task_id", "")
job_id = data.get("job_id", "")
notebook_id = data.get("notebook_id", "")
if not all([device_id, action_name, task_id, job_id]):
logger.error("[MessageProcessor] Missing required fields in query_action_state")
@@ -724,7 +718,6 @@ class MessageProcessor:
job_id=job_id,
task_id=task_id,
device_id=device_id,
notebook_id=notebook_id,
action_name=action_name,
device_action_key=device_action_key,
status=JobStatus.QUEUE,
@@ -739,27 +732,13 @@ class MessageProcessor:
if can_start_immediately:
# 可以立即开始
await self._send_action_state_response(
device_id,
action_name,
task_id,
job_id,
"query_action_status",
True,
0,
notebook_id=notebook_id,
device_id, action_name, task_id, job_id, "query_action_status", True, 0
)
logger.trace(f"[MessageProcessor] Job {job_log} can start immediately")
else:
# 需要排队
await self._send_action_state_response(
device_id,
action_name,
task_id,
job_id,
"query_action_status",
False,
10,
notebook_id=notebook_id,
device_id, action_name, task_id, job_id, "query_action_status", False, 10
)
logger.trace(f"[MessageProcessor] Job {job_log} queued")
@@ -789,7 +768,6 @@ class MessageProcessor:
job_id=req.job_id,
task_id=req.task_id,
device_id=req.device_id,
notebook_id=req.notebook_id,
action_name=action_name,
device_action_key=device_action_key,
status=JobStatus.QUEUE,
@@ -797,16 +775,11 @@ class MessageProcessor:
always_free=True,
)
self.device_manager.add_queue_request(job_info)
existing_job = job_info
logger.info(f"[MessageProcessor] Job {job_log} always_free, auto-registered from direct job_start")
else:
logger.error(f"[MessageProcessor] Job {job_log} not registered (missing query_action_state)")
return
if existing_job and req.notebook_id and not existing_job.notebook_id:
existing_job.notebook_id = req.notebook_id
notebook_id = req.notebook_id or (existing_job.notebook_id if existing_job else "")
success = self.device_manager.start_job(req.job_id)
if not success:
logger.error(f"[MessageProcessor] Failed to start job {job_log}")
@@ -822,7 +795,6 @@ class MessageProcessor:
action_name=req.action,
task_id=req.task_id,
job_id=req.job_id,
notebook_id=notebook_id,
device_action_key=device_action_key,
)
@@ -862,7 +834,6 @@ class MessageProcessor:
"job_id": req.job_id,
"task_id": req.task_id,
"device_id": req.device_id,
"notebook_id": queue_item.notebook_id,
"action_name": req.action,
"status": "failed",
"feedback_data": {},
@@ -884,7 +855,6 @@ class MessageProcessor:
"query_action_status",
True,
0,
notebook_id=next_job.notebook_id,
)
next_job_log = format_job_log(
next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
@@ -1034,16 +1004,11 @@ class MessageProcessor:
success = host_node.notify_resource_tree_update(dev_id, act, item_list)
if success is True:
if success:
logger.info(
f"[MessageProcessor] Resource tree {act} completed for device {dev_id}, "
f"items: {len(item_list)}"
)
elif success is None:
logger.info(
f"[MessageProcessor] Resource tree {act} skipped for device {dev_id}: "
"在线增加设备暂不支持"
)
else:
logger.warning(f"[MessageProcessor] Resource tree {act} failed for device {dev_id}")
@@ -1067,11 +1032,6 @@ class MessageProcessor:
for item in device_list:
target_node_id = item.get("target_node_id", "host_node")
if action == "add":
logger.info(
f"[DeviceManage] 在线增加设备暂不支持,跳过 add_device: {item.get('id', '')}"
)
continue
def _notify(target_id: str, act: str, cfg: ResourceDictType):
try:
@@ -1141,15 +1101,7 @@ class MessageProcessor:
logger.info(f"[MessageProcessor] Restart cleanup scheduled")
async def _send_action_state_response(
self,
device_id: str,
action_name: str,
task_id: str,
job_id: str,
typ: str,
free: bool,
need_more: int,
notebook_id: str = "",
self, device_id: str, action_name: str, task_id: str, job_id: str, typ: str, free: bool, need_more: int
):
"""发送动作状态响应"""
message = {
@@ -1160,7 +1112,6 @@ class MessageProcessor:
"action_name": action_name,
"task_id": task_id,
"job_id": job_id,
"notebook_id": notebook_id,
"free": free,
"need_more": need_more + 1,
},
@@ -1243,7 +1194,6 @@ class QueueProcessor:
action_name=timeout_job.action_name,
task_id=timeout_job.task_id,
job_id=timeout_job.job_id,
notebook_id=timeout_job.notebook_id,
device_action_key=timeout_job.device_action_key,
)
# 发布超时失败状态这会触发正常的job完成流程
@@ -1302,7 +1252,6 @@ class QueueProcessor:
"action_name": job_info.action_name,
"task_id": job_info.task_id,
"job_id": job_info.job_id,
"notebook_id": job_info.notebook_id,
"free": False,
"need_more": 10 + 1,
},
@@ -1342,7 +1291,6 @@ class QueueProcessor:
"action_name": job_info.action_name,
"task_id": job_info.task_id,
"job_id": job_info.job_id,
"notebook_id": job_info.notebook_id,
"free": False,
"need_more": 10 + 1,
},
@@ -1388,15 +1336,12 @@ class QueueProcessor:
"action_name": next_job.action_name,
"task_id": next_job.task_id,
"job_id": next_job.job_id,
"notebook_id": next_job.notebook_id,
"free": True,
"need_more": 0,
},
}
self.message_processor.send_message(message)
# next_job_log = format_job_log(
# next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
# )
# next_job_log = format_job_log(next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name)
# logger.debug(f"[QueueProcessor] Notified next job {next_job_log} can start")
# 立即触发下一轮状态检查
@@ -1565,7 +1510,6 @@ class WebSocketClient(BaseCommunicationClient):
"job_id": item.job_id,
"task_id": item.task_id,
"device_id": item.device_id,
"notebook_id": item.notebook_id,
"action_name": item.action_name,
"status": status,
"feedback_data": feedback_data,

View File

@@ -0,0 +1,459 @@
"""Per-action raw call/response log for Bioyond stations.
When a debug session is active, ``wrap_rpc_http`` replaces a ``BioyondV1RPC``
instance's ``post`` / ``get`` methods with closures that perform the HTTP
transport themselves, capture the request/response details, and append a record
to the active session before returning exactly what ``BaseRequest`` would have
returned. Outside of an active session the wrapped method delegates to the
original (unwrapped) implementation, leaving non-debug behavior intact.
The session writes a Markdown file under ``out_dir`` mirroring the format of
``temp_benyao/peptide/_logs/2026-04-30_160316_day3_samplefile_only_raw_calls.md``
minus the "Raw Payload Argument" section.
This module has no dependency on ``BioyondV1RPC`` itself; the only contract is
that the wrapped instance descends from ``BaseRequest`` (i.e. has a logger
returned by ``self.get_logger()``).
"""
from __future__ import annotations
import contextvars
import copy
import inspect
import json
import re
from contextlib import contextmanager
from dataclasses import dataclass, field
from datetime import datetime
from pathlib import Path
from typing import Any, Iterator, List, Optional
import requests
__all__ = [
"CallRecord",
"CallLogContext",
"session",
"wrap_rpc_http",
"active_session",
]
_DEFAULT_TIMEOUT_GET = 30
_DEFAULT_TIMEOUT_POST = 120
@dataclass
class CallRecord:
"""One captured HTTP call inside a debug session."""
index: int
method: str
url: str
path: str
source: str
transport: str
http_status: Optional[int]
request_body: Any
response_body: Any
error: Optional[str] = None
@dataclass
class CallLogContext:
"""State for a single ``session()`` block.
A session lazily creates its file on the first appended record. Actions
that abort before any RPC produce no file.
"""
action: str
out_dir: Path
started_at: datetime
calls: List[CallRecord] = field(default_factory=list)
file_path: Optional[Path] = None
def append(self, record: CallRecord) -> None:
record.index = len(self.calls) + 1
self.calls.append(record)
self._write_file()
# -- file I/O -------------------------------------------------------------
def _resolve_file_path(self) -> Path:
if self.file_path is not None:
return self.file_path
timestamp = self.started_at.strftime("%Y-%m-%d_%H%M%S")
slug = _slugify_action(self.action)
candidate = self.out_dir / f"{timestamp}_{slug}_raw_calls.md"
suffix = 2
while candidate.exists():
candidate = (
self.out_dir
/ f"{timestamp}_{slug}_raw_calls_{suffix:02d}.md"
)
suffix += 1
self.file_path = candidate
return self.file_path
def _write_file(self) -> None:
path = self._resolve_file_path()
path.parent.mkdir(parents=True, exist_ok=True)
path.write_text(_render_markdown(self), encoding="utf-8")
_active_session: contextvars.ContextVar[Optional[CallLogContext]] = (
contextvars.ContextVar("_active_session", default=None)
)
def active_session() -> Optional[CallLogContext]:
"""Return the currently active :class:`CallLogContext`, if any."""
return _active_session.get()
@contextmanager
def session(action: str, out_dir: Path) -> Iterator[CallLogContext]:
"""Open a per-action debug session.
On entry, sets the module-level ``_active_session`` ContextVar so any
``wrap_rpc_http``'d clients on the same thread/task record their calls.
On exit, the previous active session (if any) is restored.
"""
ctx = CallLogContext(
action=str(action),
out_dir=Path(out_dir),
started_at=datetime.now(),
)
token = _active_session.set(ctx)
try:
yield ctx
finally:
_active_session.reset(token)
def wrap_rpc_http(rpc: Any) -> None:
"""Idempotently wrap ``rpc.post`` / ``rpc.get``.
When a session is active (``_active_session.get() is not None``), the
wrapped methods perform the HTTP call themselves with ``requests`` and
record the call before returning the same value ``BaseRequest`` would have
returned. When no session is active, the wrapped methods delegate to the
original implementation, preserving stock ``BaseRequest`` behavior.
Calling this twice on the same instance is a no-op. The wrapper does not
alter ``rpc.form_post`` (no Sirna action calls it as of plan 3).
"""
if rpc is None:
return
if getattr(rpc, "_debug_call_log_wrapped", False):
return
rpc._orig_post = rpc.post
rpc._orig_get = rpc.get
def _wrapped_post(
url: str,
params: Any = None,
files: Any = None,
headers: Optional[dict] = None,
) -> Any:
ctx = _active_session.get()
if ctx is None:
kwargs = {}
if params is not None:
kwargs["params"] = params
if files is not None:
kwargs["files"] = files
if headers is not None:
kwargs["headers"] = headers
return rpc._orig_post(url, **kwargs)
effective_params = params if params is not None else {}
effective_headers = (
headers
if headers is not None
else {"Content-Type": "application/json"}
)
source = _detect_source(rpc)
request_body = _redact(effective_params)
record = CallRecord(
index=0,
method="POST",
url=str(url),
path=_url_path(url),
source=source,
transport=_pick_transport(effective_params),
http_status=None,
request_body=request_body,
response_body=None,
error=None,
)
return_value: Any = None
try:
response = requests.post(
url,
data=json.dumps(effective_params) if effective_params else None,
headers=effective_headers,
timeout=_DEFAULT_TIMEOUT_POST,
files=files,
)
except Exception as exc: # pragma: no cover - delegated to logger
record.error = f"transport error: {exc}"
try:
rpc.get_logger().error(f"Request ERROR: {exc}")
except Exception:
pass
ctx.append(record)
return None
record.http_status = response.status_code
record.response_body, parse_error = _decode_response_body(response)
try:
rpc.get_logger().debug(
f"Request >>> : {response.request.body} "
f"{response.status_code} {response.text}"
)
except Exception:
pass
if response.status_code == 200:
if parse_error is not None:
record.error = f"json parse error: {parse_error}"
return_value = None
else:
return_value = record.response_body
else:
record.error = f"HTTP {response.status_code}: {response.text}"
try:
rpc.get_logger().error(
f"Request ERROR: ('Request ERROR:', {response.text!r})"
)
except Exception:
pass
return_value = None
ctx.append(record)
return return_value
def _wrapped_get(
url: str,
params: Any = None,
headers: Optional[dict] = None,
) -> Any:
ctx = _active_session.get()
if ctx is None:
kwargs = {}
if params is not None:
kwargs["params"] = params
if headers is not None:
kwargs["headers"] = headers
return rpc._orig_get(url, **kwargs)
effective_params = params if params is not None else {}
effective_headers = (
headers
if headers is not None
else {"Content-Type": "application/json"}
)
source = _detect_source(rpc)
request_body = _redact(effective_params)
record = CallRecord(
index=0,
method="GET",
url=str(url),
path=_url_path(url),
source=source,
transport="params",
http_status=None,
request_body=request_body,
response_body=None,
error=None,
)
return_value: Any = None
try:
response = requests.get(
url,
params=effective_params,
headers=effective_headers,
timeout=_DEFAULT_TIMEOUT_GET,
)
except Exception as exc: # pragma: no cover - delegated to logger
record.error = f"transport error: {exc}"
try:
rpc.get_logger().error(f"Request ERROR: {exc}")
except Exception:
pass
ctx.append(record)
return None
record.http_status = response.status_code
record.response_body, parse_error = _decode_response_body(response)
try:
rpc.get_logger().debug(
f"Request >>> : {effective_params} "
f"{response.status_code} {response.text}"
)
except Exception:
pass
if response.status_code == 200:
if parse_error is not None:
record.error = f"json parse error: {parse_error}"
return_value = None
else:
return_value = record.response_body
ctx.append(record)
return return_value
rpc.post = _wrapped_post
rpc.get = _wrapped_get
rpc._debug_call_log_wrapped = True
# ---------------------------------------------------------------------------
# Helpers
# ---------------------------------------------------------------------------
_URL_PATH_RE = re.compile(r"https?://[^/]+(/.*)?$")
_SLUG_RE = re.compile(r"[^A-Za-z0-9._-]+")
def _slugify_action(action: str) -> str:
slug = _SLUG_RE.sub("_", str(action)).strip("_")
return slug or "action"
def _url_path(url: Any) -> str:
text = str(url or "")
match = _URL_PATH_RE.match(text)
if match and match.group(1):
return match.group(1)
if text.startswith("/"):
return text
return text
def _pick_transport(params: Any) -> str:
if isinstance(params, dict) and "data" in params:
return "data"
return "params"
def _detect_source(rpc: Any) -> str:
"""Walk the call stack to find the outermost frame whose ``self`` is rpc."""
try:
stack = inspect.stack()
except Exception:
return ""
candidate = ""
try:
for frame_info in stack:
frame = frame_info.frame
if frame.f_locals.get("self", None) is rpc:
candidate = frame_info.function
return candidate
finally:
del stack
def _redact(params: Any) -> Any:
"""Return a copy of ``params`` with ``apiKey`` redacted."""
try:
cloned = copy.deepcopy(params)
except Exception:
return params
_redact_in_place(cloned)
return cloned
def _redact_in_place(value: Any) -> None:
if isinstance(value, dict):
for key in list(value.keys()):
if isinstance(key, str) and key.lower() == "apikey":
value[key] = "<redacted>"
else:
_redact_in_place(value[key])
elif isinstance(value, list):
for item in value:
_redact_in_place(item)
def _decode_response_body(response: Any) -> tuple[Any, Optional[str]]:
"""Best-effort response decoding used for both record + return value."""
text = getattr(response, "text", "")
try:
return response.json(), None
except Exception as exc:
if text:
return {"raw_text": text}, str(exc)
return None, str(exc)
# ---------------------------------------------------------------------------
# Markdown rendering
# ---------------------------------------------------------------------------
def _render_markdown(ctx: CallLogContext) -> str:
title = f"# {ctx.action} Raw Call/Response Log"
parts: List[str] = [title, ""]
parts.append("## LIMS Calls")
parts.append("")
parts.append("| # | Method | Path | Source | HTTP |")
parts.append("|---|---|---|---|---|")
for record in ctx.calls:
anchor = _row_anchor(record)
http = (
f"`{record.http_status}`"
if record.http_status is not None
else "`-`"
)
parts.append(
f"| [{record.index}](#{anchor}) | `{record.method}` | "
f"`{record.path}` | `{record.source}` | {http} |"
)
parts.append("")
for record in ctx.calls:
parts.append(f"## {record.index} {record.method} {record.path}")
parts.append("")
parts.append(f"- Source: `{record.source}`")
parts.append(f"- Transport: `{record.transport}`")
if record.http_status is not None:
parts.append(f"- HTTP status: `{record.http_status}`")
else:
parts.append("- HTTP status: `-`")
if record.error:
parts.append(f"- Error: {record.error}")
parts.append("")
parts.append("### Request Body")
parts.append("")
parts.append("```json")
parts.append(_to_json_block(record.request_body))
parts.append("```")
parts.append("")
parts.append("### Response Body")
parts.append("")
parts.append("```json")
parts.append(_to_json_block(record.response_body))
parts.append("```")
parts.append("")
return "\n".join(parts).rstrip() + "\n"
def _row_anchor(record: CallRecord) -> str:
"""Build a GitHub-style anchor matching ``## N METHOD /path``."""
raw = f"{record.index}-{record.method}-{record.path}"
raw = raw.lower()
raw = re.sub(r"[^a-z0-9]+", "-", raw)
return raw.strip("-")
def _to_json_block(value: Any) -> str:
try:
return json.dumps(value, ensure_ascii=False, indent=2, sort_keys=True)
except TypeError:
return json.dumps(str(value), ensure_ascii=False, indent=2)

View File

@@ -0,0 +1,3 @@
from .sirna_station import BioyondSirnaStation, fetch_workflow_list, load_sirna_config
__all__ = ["BioyondSirnaStation", "fetch_workflow_list", "load_sirna_config"]

File diff suppressed because it is too large Load Diff

View File

@@ -7,6 +7,7 @@ Bioyond Workstation Implementation
import time
import traceback
import threading
from contextlib import contextmanager
from datetime import datetime
from typing import Dict, Any, List, Optional, Union
import json
@@ -14,6 +15,7 @@ from pathlib import Path
from unilabos.devices.workstation.workstation_base import WorkstationBase, ResourceSynchronizer
from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondV1RPC
from unilabos.devices.workstation.bioyond_studio import debug_call_log
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
from unilabos.resources.warehouse import WareHouse
from unilabos.utils.log import logger
@@ -174,6 +176,8 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
logger.warning("从Bioyond获取的物料数据为空")
return False
self._update_material_cache_from_stock(all_bioyond_data)
# 转换为UniLab格式
unilab_resources = resource_bioyond_to_plr(
all_bioyond_data,
@@ -187,6 +191,29 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
logger.error(f"从Bioyond同步物料数据失败: {e}")
return False
def _update_material_cache_from_stock(self, materials: List[Dict[str, Any]]) -> None:
"""用本次库存查询结果同步 RPC 的 name -> material id 缓存。"""
material_cache = getattr(self.bioyond_api_client, "material_cache", None)
if not isinstance(material_cache, dict):
return
before_count = len(material_cache)
for material in materials:
material_name = material.get("name")
material_id = material.get("id")
if material_name and material_id:
material_cache[material_name] = material_id
for detail_material in material.get("detail", []) or []:
detail_name = detail_material.get("name")
detail_id = detail_material.get("detailMaterialId") or detail_material.get("id")
if detail_name and detail_id:
material_cache[detail_name] = detail_id
logger.debug(
f"已用Bioyond库存同步物料缓存: {before_count} -> {len(material_cache)}"
)
def sync_to_external(self, resource: Any) -> bool:
"""将本地物料数据变更同步到Bioyond系统"""
try:
@@ -678,6 +705,70 @@ class BioyondWorkstation(WorkstationBase):
集成Bioyond物料管理的工作站实现
"""
# 子类(如 sirna / peptide覆写以指定默认 raw-call 日志目录。
# 路径相对仓库根;为 None 时若 debug_log=True 仍会写入临时位置。
_DEBUG_LOG_DEFAULT_DIR: Optional[str] = None
def _create_bioyond_rpc(self, config: Dict[str, Any]) -> BioyondV1RPC:
"""创建 Bioyond RPC 客户端并应用调试包装。
所有创建 ``BioyondV1RPC`` 的路径饿汉初始化、Sirna 延迟初始化、
以及未来的前端重新配置路径)都应通过该 helper
以确保 debug_log 包装与命名/日志策略保持一致。
"""
rpc = BioyondV1RPC(config)
debug_call_log.wrap_rpc_http(rpc)
return rpc
def _set_hardware_interface(self, rpc: BioyondV1RPC) -> BioyondV1RPC:
"""将已构造的 RPC 客户端设置到 ``self.hardware_interface``,并应用调试包装。"""
debug_call_log.wrap_rpc_http(rpc)
self.hardware_interface = rpc
return rpc
def _debug_log_resolved_dir(self) -> Path:
"""解析 ``debug_log_dir`` 为绝对路径。"""
configured = (getattr(self, "bioyond_config", {}) or {}).get("debug_log_dir")
default_dir = getattr(self, "_DEBUG_LOG_DEFAULT_DIR", None)
candidate = configured or default_dir or "temp_benyao/_logs/bioyond_debug"
path = Path(candidate)
if not path.is_absolute():
repo_root = Path(__file__).resolve().parents[4]
path = repo_root / path
return path
def _ensure_debug_log_state(self) -> None:
"""从 ``self.bioyond_config`` 派生 ``_debug_log_enabled`` / ``_debug_log_dir``。
每次进入 ``_debug_call_session`` 时都重新解析,以兼容前端在运行时
修改 ``bioyond_config['debug_log']`` 或目录的场景;同时也容忍
子类(如 Sirna 延迟初始化)在 ``__init__`` 早期未触发本方法。
"""
cfg = getattr(self, "bioyond_config", {}) or {}
self._debug_log_enabled = bool(cfg.get("debug_log"))
self._debug_log_dir = self._debug_log_resolved_dir()
@contextmanager
def _debug_call_session(self, action_name: str):
"""在 action 体外加一层 debug 会话上下文。
- ``debug_log`` 关闭时是空上下文,开销为 0。
- ``debug_log`` 开启时进入 :func:`debug_call_log.session`,所有
已被 ``wrap_rpc_http`` 包装过的 RPC 客户端都会捕获本次 action
产生的 HTTP 调用并写入 Markdown 文件。
子类(如 ``end_experiment``、``manual_unload`` 等)可以直接在
action 体里以 ``with self._debug_call_session("action_name"):`` 包裹。
"""
cfg = getattr(self, "bioyond_config", {}) or {}
enabled = bool(cfg.get("debug_log"))
if not enabled:
yield None
return
out_dir = BioyondWorkstation._debug_log_resolved_dir(self)
with debug_call_log.session(action_name, out_dir) as ctx:
yield ctx
def _publish_task_status(
self,
task_id: str,
@@ -862,7 +953,7 @@ class BioyondWorkstation(WorkstationBase):
self.bioyond_config = {}
print("警告: 未提供 bioyond_config请确保在 JSON 配置文件中提供完整配置")
self.hardware_interface = BioyondV1RPC(self.bioyond_config)
self.hardware_interface = self._create_bioyond_rpc(self.bioyond_config)
def resource_tree_add(self, resources: List[ResourcePLR]) -> None:
"""添加资源到资源树并更新ROS节点
@@ -1338,11 +1429,7 @@ class BioyondWorkstation(WorkstationBase):
if self.hardware_interface:
self.hardware_interface.scheduler_reset()
# 新物料缓存
if self.hardware_interface:
self.hardware_interface.refresh_material_cache()
# 重新同步资源
# 重新同步资源,并用同一次库存查询结果更新物料缓存
if self.resource_synchronizer:
self.resource_synchronizer.sync_from_external()

View File

@@ -0,0 +1 @@
from . import sirna_materials # noqa: F401 ensure @resource classes are importable for PLR deserialize

View File

@@ -1,6 +1,8 @@
from os import name
from pylabrobot.resources import Deck, Coordinate, Rotation
from unilabos.registry.decorators import resource
from unilabos.resources.bioyond.YB_warehouses import (
bioyond_warehouse_1x4x4,
bioyond_warehouse_1x4x4_right, # 新增:右侧仓库 (A05D08)
@@ -23,6 +25,11 @@ from unilabos.resources.bioyond.YB_warehouses import (
from unilabos.resources.bioyond.warehouses import (
bioyond_warehouse_tipbox_storage_left, # 新增Tip盒堆栈(左)
bioyond_warehouse_tipbox_storage_right, # 新增Tip盒堆栈(右)
bioyond_warehouse_sirna_automation_stack,
bioyond_warehouse_sirna_centrifuge_balance_plate_stack,
bioyond_warehouse_sirna_g3_liquid_handler,
bioyond_warehouse_numeric_stack, # 新增:数字编码堆栈 (用于多肽站)
bioyond_warehouse_live_grid,
)
@@ -101,6 +108,83 @@ class BIOYOND_PolymerPreparationStation_Deck(Deck):
for warehouse_name, warehouse in self.warehouses.items():
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
@resource(
id="BIOYOND_SirnaStation_Deck",
category=["deck"],
description="BIOYOND 小核酸工作站 Deck",
icon="配液站.webp",
)
class BIOYOND_SirnaStation_Deck(Deck):
WAREHOUSE_BIOYOND_AXIS = {
"G3移液站": "xy_col_row",
"自动化堆栈": "xy_col_row",
"离心机配平板堆栈": "xy_col_row",
}
WAREHOUSE_BIOYOND_KEY_AXIS = {
"G3移液站": "col_row",
"自动化堆栈": "col_row",
"离心机配平板堆栈": "col_row",
}
# Bioyond warehouse UUID -> 本地仓库名称 映射。
# 留空时由配置station config 的 ``warehouse_bioyond_ids``)注入。
# graph 节点也可在 deck.config.warehouse_bioyond_ids 覆盖。
WAREHOUSE_BIOYOND_IDS: dict = {}
def __init__(
self,
name: str = "SirnaStation_Deck",
size_x: float = 2700.0,
size_y: float = 1080.0,
size_z: float = 1500.0,
category: str = "deck",
setup: bool = False,
warehouse_bioyond_ids: dict | None = None,
**kwargs,
) -> None:
super().__init__(name=name, size_x=size_x, size_y=size_y, size_z=size_z)
# 按需写入实例级覆盖;保留默认空 mapping避免改动模型常量。
self.warehouse_bioyond_ids: dict = dict(self.WAREHOUSE_BIOYOND_IDS)
if warehouse_bioyond_ids:
self.warehouse_bioyond_ids.update(warehouse_bioyond_ids)
if setup:
self.setup()
@classmethod
def deserialize(cls, data: dict, allow_marshal: bool = False):
if data.get("children") and data.get("setup") is True:
data = data.copy()
data["setup"] = False
result = super().deserialize(data, allow_marshal=allow_marshal)
result._ensure_sirna_warehouse_metadata()
return result
def _ensure_sirna_warehouse_metadata(self) -> None:
for child in getattr(self, "children", []):
name = getattr(child, "name", "")
axis = self.WAREHOUSE_BIOYOND_AXIS.get(name)
if axis and not hasattr(child, "bioyond_axis"):
child.bioyond_axis = axis
key_axis = self.WAREHOUSE_BIOYOND_KEY_AXIS.get(name)
if key_axis and not hasattr(child, "bioyond_key_axis"):
child.bioyond_key_axis = key_axis
def setup(self) -> None:
# Sirna 读接口 /api/storage/location/locations-by-type 返回完整固定堆栈清单。
# LIMS 在库物料接口仍使用相同的 自动化堆栈 名称和数字库位编码。
self.warehouses = {
"G3移液站": bioyond_warehouse_sirna_g3_liquid_handler(),
"自动化堆栈": bioyond_warehouse_sirna_automation_stack(),
"离心机配平板堆栈": bioyond_warehouse_sirna_centrifuge_balance_plate_stack(),
}
self.warehouse_locations = {
"G3移液站": Coordinate(0.0, 0.0, 0.0),
"自动化堆栈": Coordinate(220.0, 0.0, 0.0),
"离心机配平板堆栈": Coordinate(1740.0, 0.0, 0.0),
}
for warehouse_name, warehouse in self.warehouses.items():
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
class BIOYOND_YB_Deck(Deck):
def __init__(
self,
@@ -150,12 +234,146 @@ class BIOYOND_YB_Deck(Deck):
for warehouse_name, warehouse in self.warehouses.items():
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
@resource(
id="BIOYOND_PeptideStation_Deck",
category=["deck"],
description="BIOYOND 多肽工作站 Deck",
icon="preparation_station.webp",
)
class BIOYOND_PeptideStation_Deck(Deck):
WAREHOUSE_BIOYOND_AXIS = dict.fromkeys(
[
"自动化堆栈",
"低温冰箱仓库",
"Tecan移液站库",
"G3移液站库",
"IDOT移液站库",
"G3缓冲库",
"盖板缓冲库",
"配平板缓冲库",
"IDOT缓冲库",
"固相合成板底座缓冲位",
"离心机库位",
"热封膜机位",
],
"xy_col_row",
)
WAREHOUSE_BIOYOND_KEY_AXIS = dict.fromkeys(WAREHOUSE_BIOYOND_AXIS, "row_col")
def __init__(
self,
name: str = "PeptideStation_Deck",
size_x: float = 3500.0,
size_y: float = 1800.0,
size_z: float = 1500.0,
category: str = "deck",
setup: bool = False
) -> None:
super().__init__(name=name, size_x=size_x, size_y=size_y, size_z=size_z)
if setup:
self.setup()
@classmethod
def deserialize(cls, data: dict, allow_marshal: bool = False):
if data.get("children") and data.get("setup") is True:
# 已有序列化子资源,跳过 setup 避免重复创建
result = super(BIOYOND_PeptideStation_Deck, cls).deserialize(data, allow_marshal=allow_marshal)
else:
result = super(BIOYOND_PeptideStation_Deck, cls).deserialize(data, allow_marshal=allow_marshal)
result._ensure_peptide_warehouse_metadata()
return result
def _ensure_peptide_warehouse_metadata(self) -> None:
for child in getattr(self, "children", []):
name = getattr(child, "name", "")
axis = self.WAREHOUSE_BIOYOND_AXIS.get(name)
if axis and not hasattr(child, "bioyond_axis"):
child.bioyond_axis = axis
key_axis = self.WAREHOUSE_BIOYOND_KEY_AXIS.get(name)
if key_axis and not hasattr(child, "bioyond_key_axis"):
child.bioyond_key_axis = key_axis
def setup(self) -> None:
# 多肽工作站仓库配置
# 基于 2026-05-09 live API probe 发现的实际仓库拓扑 (12个仓库)
# 数据来源: temp_benyao/peptide/_logs/warehouse_discovery_raw_live_2026-05-09.json
self.warehouses = {
# 主自动化堆栈 - live API: code 10-17 -> x=17, y=10显示为 10 行×17 列
"自动化堆栈": bioyond_warehouse_numeric_stack(
"自动化堆栈", rows=10, columns=17, bioyond_axis="xy_col_row", bioyond_key_axis="row_col"
),
# 低温存储
"低温冰箱仓库": bioyond_warehouse_live_grid(
"低温冰箱仓库", rows=2, columns=3, slot_keys=["1", "2", "3", "4", "5", "6"]
),
# 移液站库位
"Tecan移液站库": bioyond_warehouse_live_grid(
"Tecan移液站库", rows=1, columns=18, slot_keys=[str(index) for index in range(1, 19)]
),
"G3移液站库": bioyond_warehouse_live_grid(
"G3移液站库",
rows=1,
columns=18,
slot_keys=["1", "2", "3", "4", "垃圾桶", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18"],
),
"IDOT移液站库": bioyond_warehouse_live_grid(
"IDOT移液站库",
rows=1,
columns=12,
slot_keys=[f"0009-{index:04d}" for index in range(1, 13)],
),
# 缓冲库位
"G3缓冲库": bioyond_warehouse_live_grid(
"G3缓冲库", rows=1, columns=5, slot_keys=[str(index) for index in range(1, 6)]
),
"盖板缓冲库": bioyond_warehouse_live_grid(
"盖板缓冲库", rows=1, columns=7, slot_keys=[str(index) for index in range(1, 8)]
),
"配平板缓冲库": bioyond_warehouse_live_grid(
"配平板缓冲库", rows=1, columns=3, slot_keys=[str(index) for index in range(1, 4)]
),
"IDOT缓冲库": bioyond_warehouse_live_grid(
"IDOT缓冲库", rows=1, columns=2, slot_keys=["1", "1"]
),
"固相合成板底座缓冲位": bioyond_warehouse_live_grid(
"固相合成板底座缓冲位",
rows=1,
columns=4,
slot_keys=[f"0015-{index:04d}" for index in range(1, 5)],
),
# 设备库位
"离心机库位": bioyond_warehouse_live_grid(
"离心机库位", rows=1, columns=4, slot_keys=[f"0017-{index:04d}" for index in range(1, 5)]
),
"热封膜机位": bioyond_warehouse_live_grid(
"热封膜机位", rows=1, columns=2, slot_keys=[f"0016-{index:04d}" for index in range(1, 3)]
),
}
# 仓库位置布局 (需根据实际硬件布局调整)
self.warehouse_locations = {
"自动化堆栈": Coordinate(0.0, 0.0, 0.0),
"Tecan移液站库": Coordinate(0.0, 1150.0, 0.0),
"G3移液站库": Coordinate(0.0, 1300.0, 0.0),
"IDOT移液站库": Coordinate(0.0, 1450.0, 0.0),
"G3缓冲库": Coordinate(0.0, 1600.0, 0.0),
"盖板缓冲库": Coordinate(850.0, 1600.0, 0.0),
"低温冰箱仓库": Coordinate(2700.0, 0.0, 0.0),
"配平板缓冲库": Coordinate(2700.0, 300.0, 0.0),
"IDOT缓冲库": Coordinate(2700.0, 450.0, 0.0),
"固相合成板底座缓冲位": Coordinate(2700.0, 600.0, 0.0),
"离心机库位": Coordinate(2700.0, 750.0, 0.0),
"热封膜机位": Coordinate(2700.0, 900.0, 0.0),
}
for warehouse_name, warehouse in self.warehouses.items():
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
def YB_Deck(name: str) -> Deck:
by=BIOYOND_YB_Deck(name=name)
by.setup()
return by

View File

@@ -0,0 +1,126 @@
"""Sirna Station Material Resource Definitions
Defines PyLabRobot resource classes for Bioyond Sirna station materials.
Each class is decorated with @resource for AST-based registry discovery.
"""
from collections import OrderedDict
from pylabrobot.resources import Plate, TipRack, Container
from unilabos.registry.decorators import resource
@resource(
id="bioyond_sirna_g3_200ul_tip_rack",
category=["labware", "tip_rack"],
description="G3-200ul枪头盒 for Sirna station",
)
class BioyondSirna_G3_200ul_TipRack(TipRack):
"""G3-200ul tip rack for Sirna liquid handling."""
def __init__(self, *args, **kwargs):
kwargs.setdefault("size_x", 127.76)
kwargs.setdefault("size_y", 85.48)
kwargs.setdefault("size_z", 64.0)
kwargs.setdefault("model", "bioyond_sirna_g3_200ul_tip_rack")
kwargs.setdefault("with_tips", True)
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
kwargs["ordering"] = OrderedDict()
super().__init__(*args, **kwargs)
@resource(
id="bioyond_sirna_g3_50ul_tip_rack",
category=["labware", "tip_rack"],
description="G3-50ul枪头盒 for Sirna station",
)
class BioyondSirna_G3_50ul_TipRack(TipRack):
"""G3-50ul tip rack for Sirna liquid handling."""
def __init__(self, *args, **kwargs):
kwargs.setdefault("size_x", 127.76)
kwargs.setdefault("size_y", 85.48)
kwargs.setdefault("size_z", 64.0)
kwargs.setdefault("model", "bioyond_sirna_g3_50ul_tip_rack")
kwargs.setdefault("with_tips", True)
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
kwargs["ordering"] = OrderedDict()
super().__init__(*args, **kwargs)
@resource(
id="bioyond_sirna_384_well_plate",
category=["labware", "plate"],
description="384孔板 for Sirna assays",
)
class BioyondSirna_384WellPlate(Plate):
"""384-well plate for Sirna reporter gene detection."""
def __init__(self, *args, **kwargs):
kwargs.setdefault("size_x", 127.76)
kwargs.setdefault("size_y", 85.48)
kwargs.setdefault("size_z", 14.35)
kwargs.setdefault("model", "bioyond_sirna_384_well_plate")
kwargs.setdefault("plate_type", "skirted")
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
kwargs["ordering"] = OrderedDict()
super().__init__(*args, **kwargs)
@resource(
id="bioyond_sirna_cell_culture_plate",
category=["labware", "plate"],
description="细胞培养板 for Sirna cell culture",
)
class BioyondSirna_CellCulturePlate(Plate):
"""Cell culture plate for Sirna experiments."""
def __init__(self, *args, **kwargs):
kwargs.setdefault("size_x", 127.76)
kwargs.setdefault("size_y", 85.48)
kwargs.setdefault("size_z", 14.35)
kwargs.setdefault("model", "bioyond_sirna_cell_culture_plate")
kwargs.setdefault("plate_type", "skirted")
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
kwargs["ordering"] = OrderedDict()
super().__init__(*args, **kwargs)
@resource(
id="bioyond_sirna_reagent_trough",
category=["labware", "trough"],
description="试剂槽 for Sirna reagents",
)
class BioyondSirna_ReagentTrough(Container):
"""Reagent trough for Sirna station reagents (RiboGreen, etc.)."""
def __init__(self, *args, **kwargs):
kwargs.setdefault("size_x", 127.76)
kwargs.setdefault("size_y", 85.48)
kwargs.setdefault("size_z", 44.0)
kwargs.setdefault("max_volume", 300000.0)
kwargs.setdefault("model", "bioyond_sirna_reagent_trough")
super().__init__(*args, **kwargs)
# Material type code mapping for dynamic instantiation
MATERIAL_TYPE_CODE_TO_CLASS = {
"0016": BioyondSirna_G3_200ul_TipRack,
"0017": BioyondSirna_G3_50ul_TipRack,
"0015": BioyondSirna_384WellPlate,
"0001": BioyondSirna_CellCulturePlate,
"0006": BioyondSirna_ReagentTrough,
}
def get_material_class_by_type_code(type_code: str):
"""Get resource class by Bioyond material type code.
Args:
type_code: Bioyond materialTypeCode (e.g., "0016", "0017")
Returns:
Resource class or None if not found
"""
return MATERIAL_TYPE_CODE_TO_CLASS.get(type_code)

View File

@@ -1,5 +1,180 @@
from pylabrobot.resources import Coordinate
from pylabrobot.resources.carrier import ResourceHolder, create_homogeneous_resources
from unilabos.resources.warehouse import WareHouse, warehouse_factory
class BioyondWareHouse(WareHouse):
"""Bioyond 仓库,额外保存服务端 x/y 坐标和库位标签语义。"""
def __init__(self, *args, bioyond_axis: str = "xy_row_col", bioyond_key_axis: str = "row_col", **kwargs):
super().__init__(*args, **kwargs)
self.bioyond_axis = bioyond_axis
self.bioyond_key_axis = bioyond_key_axis
def serialize(self) -> dict:
data = super().serialize()
data["bioyond_axis"] = self.bioyond_axis
data["bioyond_key_axis"] = self.bioyond_key_axis
return data
def bioyond_warehouse_numeric_stack(
name: str,
rows: int = 10,
columns: int = 17,
bioyond_axis: str = "xy_row_col",
bioyond_key_axis: str = "row_col",
) -> WareHouse:
"""创建 Bioyond 数字库位堆栈,库位名使用服务端返回的 行-列 格式。
bioyond_axis: 仓库级别的 Bioyond 坐标轴约定,供 graphio 的坐标映射使用。
- "xy_row_col" (default): Bioyond x→row, y→col (reaction/peptide 历史约定).
- "xy_col_row": Bioyond x→col, y→row (Sirna live API 实测约定).
bioyond_key_axis: 库位标签生成约定。
- "row_col" (default): 视觉行列和标签行列一致,例如 10 行 x 17 列 → 1-1..10-17。
- "col_row": 视觉行列转置,但标签仍保持 Bioyond row-col例如
17 行 x 10 列 → 1-1..10-17。
未设置时 graphio 回退到默认 "xy_row_col",其他调用方保持原行为。
"""
num_items_x = columns
num_items_y = rows
num_items_z = 1
dx = 10.0
dy = 10.0
dz = 10.0
item_dx = 147.0
item_dy = 106.0
item_dz = 130.0
locations = [
Coordinate(dx + col * item_dx, dy + row * item_dy, dz)
for row in range(num_items_y)
for col in range(num_items_x)
]
holders = create_homogeneous_resources(
klass=ResourceHolder,
locations=locations,
resource_size_x=127.0,
resource_size_y=86.0,
resource_size_z=25.0,
name_prefix=name,
)
if bioyond_key_axis == "row_col":
keys = [
f"{row + 1}-{col + 1}"
for row in range(num_items_y)
for col in range(num_items_x)
]
elif bioyond_key_axis == "col_row":
keys = [
f"{col + 1}-{row + 1}"
for row in range(num_items_y)
for col in range(num_items_x)
]
else:
raise ValueError(f"未知 Bioyond 库位标签约定: {bioyond_key_axis!r}")
warehouse = BioyondWareHouse(
name=name,
size_x=dx + item_dx * num_items_x,
size_y=dy + item_dy * num_items_y,
size_z=dz + item_dz * num_items_z,
num_items_x=num_items_x,
num_items_y=num_items_y,
num_items_z=num_items_z,
ordering_layout="row-major",
sites={key: holder for key, holder in zip(keys, holders.values())},
category="warehouse",
bioyond_axis=bioyond_axis,
bioyond_key_axis=bioyond_key_axis,
)
return warehouse
def bioyond_warehouse_live_grid(
name: str,
rows: int,
columns: int,
slot_keys: list[str] | None = None,
bioyond_axis: str = "xy_col_row",
bioyond_key_axis: str = "row_col",
) -> WareHouse:
"""创建 Bioyond 实测库位网格,按服务端 code 保存位点标签。
默认用于 Peptide live API 返回的坐标x 是视觉列y 是视觉行。
当服务端 code 重复时,为保持 PLR ordering 唯一性,会给后续重复项追加 ``#N``。
"""
num_items_x = columns
num_items_y = rows
num_items_z = 1
dx = 10.0
dy = 10.0
dz = 10.0
item_dx = 147.0
item_dy = 106.0
item_dz = 130.0
locations = [
Coordinate(dx + col * item_dx, dy + row * item_dy, dz)
for row in range(num_items_y)
for col in range(num_items_x)
]
holders = create_homogeneous_resources(
klass=ResourceHolder,
locations=locations,
resource_size_x=127.0,
resource_size_y=86.0,
resource_size_z=25.0,
name_prefix=name,
)
keys = slot_keys or [str(index + 1) for index in range(num_items_x * num_items_y)]
if len(keys) != len(holders):
raise ValueError(f"{name} 库位数量不匹配: keys={len(keys)}, holders={len(holders)}")
seen: dict[str, int] = {}
unique_keys: list[str] = []
for key in keys:
count = seen.get(key, 0) + 1
seen[key] = count
unique_keys.append(key if count == 1 else f"{key}#{count}")
return BioyondWareHouse(
name=name,
size_x=dx + item_dx * num_items_x,
size_y=dy + item_dy * num_items_y,
size_z=dz + item_dz * num_items_z,
num_items_x=num_items_x,
num_items_y=num_items_y,
num_items_z=num_items_z,
ordering_layout="row-major",
sites={key: holder for key, holder in zip(unique_keys, holders.values())},
category="warehouse",
bioyond_axis=bioyond_axis,
bioyond_key_axis=bioyond_key_axis,
)
# ================ 小核酸工作站相关堆栈 ================
def bioyond_warehouse_sirna_g3_liquid_handler(name: str = "G3移液站") -> WareHouse:
"""创建小核酸 G3 移液站库位堆栈:显示为 14 行 x 1 列,标签保持 1-1..1-14。"""
return bioyond_warehouse_numeric_stack(
name, rows=14, columns=1, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
)
def bioyond_warehouse_sirna_automation_stack(name: str = "自动化堆栈") -> WareHouse:
"""创建小核酸自动化堆栈:显示为 17 行 x 10 列,标签保持 1-1..10-17。"""
return bioyond_warehouse_numeric_stack(
name, rows=17, columns=10, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
)
def bioyond_warehouse_sirna_centrifuge_balance_plate_stack(name: str = "离心机配平板堆栈") -> WareHouse:
"""创建小核酸离心机配平板堆栈:显示为 1 行 x 2 列,标签保持 1-1、2-1。"""
return bioyond_warehouse_numeric_stack(
name, rows=1, columns=2, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
)
# ================ 反应站相关堆栈 ================
def bioyond_warehouse_1x4x4(name: str) -> WareHouse:

View File

@@ -736,7 +736,7 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
logger.warning(f"物料 {unique_name} 不是有效的 ResourcePLR 实例,类型: {type(plr_material)}")
continue
plr_material.code = material.get("code", "") and material.get("barCode", "") or ""
plr_material.code = material.get("barCode") or material.get("code") or ""
plr_material.unilabos_uuid = str(uuid.uuid4())
# ⭐ 保存 Bioyond 原始信息到 unilabos_extra用于出库时查询
@@ -864,11 +864,22 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
warehouse = deck.warehouses[wh_name]
logger.debug(f"[Warehouse匹配] 找到warehouse: {wh_name} (容量: {warehouse.capacity}, 行×列: {warehouse.num_items_x}×{warehouse.num_items_y})")
# Bioyond坐标映射 (重要!): x→行(1=A,2=B...), y→列(1=01,2=02...), z→层(通常=1)
x = loc.get("x", 1) # 行号 (1-based: 1=A, 2=B, 3=C, 4=D)
y = loc.get("y", 1) # 列号 (1-based: 1=01, 2=02, 3=03...)
# Bioyond坐标映射:
# - 历史 row_col 仓库中 x/y 直接按行/列参与索引。
# - Sirna 的库位标签为 col-rowstock-material 返回 x=标签第二段、y=标签第一段。
# 因此 x=13,y=4 应落到 key=4-13而不是交换后落到 3-5。
x = loc.get("x", 1)
y = loc.get("y", 1)
z = loc.get("z", 1) # 层号 (1-based, 通常为1)
# 仓库级别的轴约定覆盖。
# 对旧的 row-col 视觉标签bioyond_axis="xy_col_row" 需要交换 x/y。
# 对 Sirna 的 col-row 库位标签,原始 x/y 已能直接索引到 code 对应位置,不再交换。
bioyond_axis = getattr(warehouse, "bioyond_axis", "xy_row_col")
bioyond_key_axis = getattr(warehouse, "bioyond_key_axis", "row_col")
if bioyond_axis == "xy_col_row" and bioyond_key_axis != "col_row":
x, y = y, x
# 如果是右侧堆栈,需要调整列号 (5→1, 6→2, 7→3, 8→4)
if wh_name == "堆栈1右":
y = y - 4 # 将5-8映射到1-4
@@ -912,10 +923,43 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
logger.debug(f"列优先warehouse {wh_name}: x={x}(行),y={y}(列) → row={row_idx},col={col_idx} → idx={idx}")
if 0 <= idx < warehouse.capacity:
if warehouse[idx] is None or isinstance(warehouse[idx], ResourceHolder):
slot_key = None
ordering = getattr(warehouse, "_ordering", {})
sites = getattr(warehouse, "sites", [])
if isinstance(ordering, dict) and idx < len(sites):
site_at_idx = sites[idx]
slot_key = next(
(key for key, site in ordering.items() if site is site_at_idx),
None,
)
current_resource = warehouse[idx]
if current_resource is None or isinstance(current_resource, (ResourceHolder, str)):
if isinstance(current_resource, str):
logger.warning(
f"⚠️ 物料 {unique_name} 覆盖 {wh_name}[{idx}]"
f"{f'({slot_key})' if slot_key else ''} 的旧占位 occupied_by={current_resource!r}"
)
# 物料尺寸已在放入warehouse前根据需要进行了交换
warehouse[idx] = plr_material
logger.debug(f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}] (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})")
logger.debug(
f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}]"
f"{f'({slot_key})' if slot_key else ''} "
f"(Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})"
)
else:
parent = getattr(current_resource, "parent", None)
current_repr = repr(current_resource)
current_len = len(current_resource) if isinstance(current_resource, str) else None
logger.warning(
f"⚠️ 物料 {unique_name} 跳过放置到 {wh_name}[{idx}]"
f"{f'({slot_key})' if slot_key else ''}:目标库位已有 "
f"{type(current_resource).__name__}"
f"(value={current_repr}, len={current_len})"
f"(name={getattr(current_resource, 'name', None)}, "
f"parent={getattr(parent, 'name', None)}, "
f"uuid={getattr(current_resource, 'unilabos_uuid', None)})"
)
else:
logger.warning(f"❌ 物料 {unique_name} 的索引 {idx} 超出仓库 {wh_name} 容量 {warehouse.capacity}")
else:

View File

@@ -45,7 +45,6 @@ from unilabos.resources.graphio import (
)
from unilabos.resources.plr_additional_res_reg import register
from unilabos.ros.msgs.message_converter import (
String,
convert_to_ros_msg,
convert_from_ros_msg_with_mapping,
convert_to_ros_msg_with_mapping,
@@ -251,8 +250,7 @@ class PropertyPublisher:
):
self.node = node
self.name = name
self.msg_type = self._normalize_msg_type(msg_type)
self.original_msg_type = msg_type
self.msg_type = msg_type
self.get_method = get_method
self.timer_period = initial_period
self.print_publish = print_publish
@@ -260,36 +258,16 @@ class PropertyPublisher:
self._value = None
try:
self.publisher_ = node.create_publisher(self.msg_type, f"{name}", qos)
self.publisher_ = node.create_publisher(msg_type, f"{name}", qos)
except Exception as e:
self.node.lab_logger().error(
f"StatusError, DeviceId: {self.node.device_id} 创建发布者 {name} 失败,"
f"可能由于注册表有误,类型: {msg_type},错误: {e}"
f"StatusError, DeviceId: {self.node.device_id} 创建发布者 {name} 失败,可能由于注册表有误,类型: {msg_type},错误: {e}"
)
self.msg_type = String
try:
self.publisher_ = node.create_publisher(self.msg_type, f"{name}", qos)
self.node.lab_logger().warning(
f"属性 {name} 的发布类型已降级为 String原始类型: {msg_type}"
)
except Exception:
self.publisher_ = None
self.timer = node.create_timer(self.timer_period, self.publish_property)
self.__loop = ROS2DeviceNode.get_asyncio_loop()
str_msg_type = str(self.msg_type)[8:-2]
str_msg_type = str(msg_type)[8:-2]
self.node.lab_logger().trace(f"发布属性: {name}, 类型: {str_msg_type}, 周期: {initial_period}秒, QoS: {qos}")
@staticmethod
def _normalize_msg_type(msg_type):
if msg_type in (dict, list, tuple, set) or msg_type in ("dict", "list", "tuple", "set"):
return String
return msg_type
def _normalize_value(self, value):
if self.msg_type is String and isinstance(value, (dict, list, tuple, set)):
return json.dumps(value, ensure_ascii=False, cls=TypeEncoder)
return value
def get_property(self):
if asyncio.iscoroutinefunction(self.get_method):
# 如果是异步函数,运行事件循环并等待结果
@@ -324,16 +302,12 @@ class PropertyPublisher:
pass
# self.node.lab_logger().trace(f"【.publish_property】发布 {self.msg_type}: {value}")
if value is not None:
if self.publisher_ is None:
return
value = self._normalize_value(value)
msg = convert_to_ros_msg(self.msg_type, value)
self.publisher_.publish(msg)
# self.node.lab_logger().trace(f"【.publish_property】属性 {self.name} 发布成功")
except Exception as e:
topic = getattr(self.publisher_, "topic", self.name)
self.node.lab_logger().error(
f"【.publish_property】发布属性 {topic} 出错: {str(e)}\n{traceback.format_exc()}"
f"【.publish_property】发布属性 {self.publisher_.topic} 出错: {str(e)}\n{traceback.format_exc()}"
)
def change_frequency(self, period):

View File

@@ -1691,9 +1691,7 @@ class HostNode(BaseROS2DeviceNode):
else:
self.lab_logger().warning("⚠️ 收到无效的Pong响应缺少ping_id")
def notify_resource_tree_update(
self, device_id: str, action: str, resource_uuid_list: List[str]
) -> Optional[bool]:
def notify_resource_tree_update(self, device_id: str, action: str, resource_uuid_list: List[str]) -> bool:
"""
通知设备节点更新资源树
@@ -1703,14 +1701,13 @@ class HostNode(BaseROS2DeviceNode):
resource_uuid_list: 资源UUIDs
Returns:
True if the update completed, False if it failed, None if it was intentionally skipped.
bool: 操作是否成功
"""
try:
# 检查设备是否存在
if device_id not in self.devices_names:
self.lab_logger().info(
f"[Host Node-Resource] 在线增加设备暂不支持,跳过设备 {device_id} 的资源树 {action} 更新"
)
return None
self.lab_logger().error(f"[Host Node-Resource] Device {device_id} not found in devices_names")
return False
namespace = self.devices_names[device_id]
device_key = f"{namespace}/{device_id}"

View File

@@ -47,10 +47,7 @@ def _has_uv() -> bool:
def _install_command(installer: str, package: str, upgrade: bool, is_chinese: bool) -> List[str]:
if installer == "uv":
# uv >= 0.5 默认要求虚拟环境,对 conda env 会报 "No virtual environment found"。
# 显式 --python sys.executable 让 uv 把当前解释器conda/venv/system 都行)
# 视为目标环境,绕开 venv 检测。
cmd = ["uv", "pip", "install", "--python", sys.executable]
cmd = ["uv", "pip", "install"]
if upgrade:
cmd.append("--upgrade")
cmd.append(package)
@@ -92,11 +89,7 @@ def _print_manual_git_install_hint(requirement: str) -> None:
return
repo_dir = _repo_dir_name(git_url)
install_cmd = (
f'uv pip install --python "{sys.executable}" -e .'
if _has_uv()
else f"{sys.executable} -m pip install -e ."
)
install_cmd = "uv pip install -e ." if _has_uv() else f"{sys.executable} -m pip install -e ."
if _is_chinese_locale() and not _has_uv():
install_cmd += " -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"

View File

@@ -2,7 +2,7 @@
<?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
<package format="3">
<name>unilabos_msgs</name>
<version>0.11.3</version>
<version>0.11.1</version>
<description>ROS2 Messages package for unilabos devices</description>
<maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
<maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>