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|
|
a66369e2c3 |
@@ -3,7 +3,7 @@
|
||||
|
||||
package:
|
||||
name: unilabos
|
||||
version: 0.11.3
|
||||
version: 0.11.1
|
||||
|
||||
source:
|
||||
path: ../../unilabos
|
||||
@@ -54,7 +54,7 @@ requirements:
|
||||
- pymodbus
|
||||
- matplotlib
|
||||
- pylibftdi
|
||||
- uni-lab::unilabos-env ==0.11.3
|
||||
- uni-lab::unilabos-env ==0.11.1
|
||||
|
||||
about:
|
||||
repository: https://github.com/deepmodeling/Uni-Lab-OS
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
|
||||
package:
|
||||
name: unilabos-env
|
||||
version: 0.11.3
|
||||
version: 0.11.1
|
||||
|
||||
build:
|
||||
noarch: generic
|
||||
|
||||
@@ -3,7 +3,7 @@
|
||||
|
||||
package:
|
||||
name: unilabos-full
|
||||
version: 0.11.3
|
||||
version: 0.11.1
|
||||
|
||||
build:
|
||||
noarch: generic
|
||||
@@ -11,7 +11,7 @@ build:
|
||||
requirements:
|
||||
run:
|
||||
# Base unilabos package (includes unilabos-env)
|
||||
- uni-lab::unilabos ==0.11.3
|
||||
- uni-lab::unilabos ==0.11.1
|
||||
# Documentation tools
|
||||
- sphinx
|
||||
- sphinx_rtd_theme
|
||||
|
||||
@@ -5,98 +5,9 @@ description: Guide for adding new devices to Uni-Lab-OS (接入新设备). Uses
|
||||
|
||||
# 添加新设备到 Uni-Lab-OS
|
||||
|
||||
本 Skill 是自包含的设备接入指南,不依赖外部文档。迁移给别人时,只复制 `.cursor/skills/add-device/SKILL.md` 即可获得核心规则、模板、验证方式和常见错误清单。
|
||||
**第一步:** 使用 Read 工具读取 `docs/ai_guides/add_device.md`,获取完整的设备接入指南。
|
||||
|
||||
开始实现前,仍应搜索 `unilabos/devices/` 获取同类别已有设备的接口、参数名、状态字符串和返回值风格作为参考。
|
||||
|
||||
---
|
||||
|
||||
## 接入工作流
|
||||
|
||||
按下面顺序推进,并在工作中维护进度:
|
||||
|
||||
```text
|
||||
设备接入进度:
|
||||
- [ ] 1. 确定设备类别(物模型)和对外单位
|
||||
- [ ] 2. 确定通信协议
|
||||
- [ ] 3. 收集指令协议(SDK、厂商文档、寄存器表、HTTP API、用户口述)
|
||||
- [ ] 4. 对齐同类设备接口(搜索 unilabos/devices/)
|
||||
- [ ] 5. 创建驱动 unilabos/devices/<category>/<file>.py
|
||||
- [ ] 6. 验证可导入、注册表扫描、启动测试
|
||||
- [ ] 7. 如需要,配置实验图文件
|
||||
```
|
||||
|
||||
## 设备类别(物模型)
|
||||
|
||||
优先使用已有类别。只有确实无法归类时才使用 `custom`。
|
||||
|
||||
| 类别 ID | 说明 | 标准属性 | 标准动作 |
|
||||
|---|---|---|---|
|
||||
| `temperature` | 加热、冷却、温控 | `temp`, `temp_target`, `status` | `set_temperature`, `stop` |
|
||||
| `pump_and_valve` | 泵、阀门、注射器 | 见子类型表 | 见子类型表 |
|
||||
| `motor` | 电机、步进马达 | `position`, `status` | `enable`, `move_position`, `move_speed`, `stop` |
|
||||
| `heaterstirrer` | 加热搅拌一体机 | `temp`, `stir_speed`, `status` | `set_temperature`, `stir`, `stop` |
|
||||
| `balance` | 天平、称重 | `weight`, `unit`, `status` | `tare`, `read_weight` |
|
||||
| `sensor` | 传感器(液位、温度等) | `value`, `level`, `status` | `read_value`, `set_threshold` |
|
||||
| `liquid_handling` | 液体处理机器人 | `status`, `deck_state` | `transfer_liquid`, `aspirate`, `dispense` |
|
||||
| `robot_arm` | 机械臂 | `arm_pose`, `arm_status` | `moveit_task`, `pick_and_place` |
|
||||
| `workstation` | 工作站、组合设备 | `workflow_sequence`, `material_info` | `create_order`, `scheduler_start`, `scheduler_stop` |
|
||||
| `virtual` | 虚拟、模拟设备 | 按模拟的真实设备定义 | 按模拟的真实设备定义 |
|
||||
| `custom` | 不属于以上类别 | 用户自定义 | 用户自定义 |
|
||||
|
||||
`pump_and_valve` 子类型:
|
||||
|
||||
| 子类型 | 最小通用属性 | 最小通用动作 | 单位约定 |
|
||||
|---|---|---|---|
|
||||
| 注射泵(syringe pump) | `status`, `valve_position`, `position` | `initialize`, `set_valve_position`, `set_position`, `pull_plunger`, `push_plunger`, `stop_operation` | 体积=mL, 速度=mL/s |
|
||||
| 电磁阀(solenoid valve) | `status`, `valve_position` | `open`, `close`, `set_valve_position` | 无 |
|
||||
| 蠕动泵(peristaltic pump) | `status`, `speed` | `start`, `stop`, `set_speed` | 流速=mL/min |
|
||||
|
||||
对外暴露的属性和动作参数必须使用用户友好的物理单位(mL、ul、degC、RPM 等),硬件原始值转换放在驱动内部。
|
||||
|
||||
## 通信协议和指令来源
|
||||
|
||||
先确认通信方式,再确认具体指令协议。物模型只定义设备“应该做什么”,不会告诉你硬件“具体发什么字节/请求”。
|
||||
|
||||
| 协议 | 常用 config 参数 | 常用依赖 | 现有抽象 |
|
||||
|---|---|---|---|
|
||||
| Serial (RS232/RS485) | `port`, `baudrate`, `timeout` | `pyserial` | 直接使用 `serial.Serial` |
|
||||
| Modbus RTU | `port`, `baudrate`, `slave_id` | `pymodbus` | `device_comms/modbus_plc/` |
|
||||
| Modbus TCP | `host`, `port`, `slave_id` | `pymodbus` | `device_comms/modbus_plc/` |
|
||||
| TCP Socket | `host`, `port`, `timeout` | stdlib | 直接使用 `socket` |
|
||||
| HTTP API | `url`, `token`, `timeout` | `requests` | `device_comms/rpc.py` |
|
||||
| OPC UA | `url` | `opcua` | `device_comms/opcua_client/` |
|
||||
| 无通信(虚拟) | 无 | 无 | 在动作中模拟行为 |
|
||||
|
||||
必须从以下来源之一获得指令细节:
|
||||
|
||||
| 来源 | 处理方式 |
|
||||
|---|---|
|
||||
| 现成 SDK/驱动代码 | 读取代码,提取指令逻辑,包装进 Uni-Lab-OS 类 |
|
||||
| 协议文档/手册 | 解析命令、响应、校验、寄存器、错误码 |
|
||||
| 用户口述 | 按描述实现指令编解码,标出不确定点 |
|
||||
| 标准协议 | 使用标准实现,例如 Modbus 寄存器表、SCPI |
|
||||
| 虚拟设备 | 跳过硬件通信,在动作方法中维护模拟状态 |
|
||||
|
||||
## 对齐已有实现(强制)
|
||||
|
||||
实现前必须搜索 `unilabos/devices/` 中同类别设备:
|
||||
|
||||
- 参数名必须与已有设备保持一致;动作方法参数名是接口契约,不要随意改成 `volume_ml`、`target_temp_c` 这类新名字。
|
||||
- `status` 字符串值要和同类设备一致,优先使用英文稳定值,例如 `Idle`、`Running`、`Error`。
|
||||
- 状态属性用 `@property` + `@topic_config()` 明确声明。
|
||||
- 返回值使用结构化 dict,至少包含 `success`,需要给前端展示的信息放在 `message`、`data`、`error` 等字段。
|
||||
|
||||
## 架构选择
|
||||
|
||||
| 场景 | 推荐方式 |
|
||||
|---|---|
|
||||
| 简单设备 | 纯 Python 类 + `@device` |
|
||||
| 工作站/组合设备 | `WorkstationBase` 或项目内已有工作站模式 |
|
||||
| 液体处理 | `LiquidHandlerAbstract` / PyLabRobot 相关模式 |
|
||||
| Modbus 设备 | 复用 `device_comms/modbus_plc/` 或项目内 Modbus 示例 |
|
||||
| OPC UA 设备 | 复用 `device_comms/opcua_client/` |
|
||||
| 外部独立包 | 使用 `create-device-package` skill |
|
||||
该指南包含设备类别(物模型)列表、通信协议模板、常见错误检查清单等。搜索 `unilabos/devices/` 获取已有设备的实现参考。
|
||||
|
||||
---
|
||||
|
||||
@@ -176,29 +87,6 @@ Args:
|
||||
- 如果只写 `param: 参数说明`,`title` 会兜底为字段名,`description` 使用参数说明。
|
||||
- 如果没有写参数文档,生成器也会兜底补齐 `title=<字段名>` 和 `description=""`,但新设备应优先写清楚显示名和说明。
|
||||
|
||||
### 特殊参数类型:ResourceSlot / DeviceSlot
|
||||
|
||||
需要前端选择资源或设备时,用特殊类型注解,registry 会自动生成 `placeholder_keys`:
|
||||
|
||||
```python
|
||||
from typing import List
|
||||
from unilabos.registry.placeholder_type import DeviceSlot, ResourceSlot
|
||||
|
||||
@action(description="转移液体")
|
||||
def transfer(self, source: ResourceSlot, target: ResourceSlot, volume_ul: float) -> dict:
|
||||
"""
|
||||
Args:
|
||||
source[源资源]: 源容器或孔位。
|
||||
target[目标资源]: 目标容器或孔位。
|
||||
volume_ul[体积(ul)]: 转移体积。
|
||||
"""
|
||||
return {"success": True}
|
||||
|
||||
@action(description="同步设备")
|
||||
def sync_devices(self, devices: List[DeviceSlot]) -> dict:
|
||||
return {"success": True, "count": len(devices)}
|
||||
```
|
||||
|
||||
### @topic_config — 状态属性配置
|
||||
|
||||
```python
|
||||
@@ -306,154 +194,3 @@ class MyDevice:
|
||||
- `post_init` 用 `@not_action` 标记,参数类型标注为 `BaseROS2DeviceNode`
|
||||
- 运行时状态存储在 `self.data` 字典中
|
||||
- 设备文件放在 `unilabos/devices/<category>/` 目录下
|
||||
|
||||
---
|
||||
|
||||
## 通信实现片段
|
||||
|
||||
Serial 文本指令:
|
||||
|
||||
```python
|
||||
def _send_command(self, cmd: str) -> str:
|
||||
self.ser.write(f"{cmd}\r\n".encode())
|
||||
return self.ser.readline().decode().strip()
|
||||
```
|
||||
|
||||
RS-485 响应解析要先定位帧头,不要用硬编码索引直接解析原始响应:
|
||||
|
||||
```python
|
||||
def _normalize_response(self, raw: str, start_marker: str = "/") -> str:
|
||||
pos = raw.find(start_marker)
|
||||
return raw[pos:] if pos >= 0 else raw
|
||||
```
|
||||
|
||||
自定义二进制帧:
|
||||
|
||||
```python
|
||||
def _build_frame(self, func_code: int, data: bytes) -> bytes:
|
||||
frame = bytearray([0xFE, func_code]) + bytearray(data)
|
||||
checksum = sum(frame[1:]) % 256
|
||||
frame.append(checksum)
|
||||
return bytes(frame)
|
||||
```
|
||||
|
||||
Modbus 寄存器映射:
|
||||
|
||||
```python
|
||||
REGISTER_MAP = {
|
||||
"temp_target": {"addr": 0x000B, "scale": 10},
|
||||
}
|
||||
|
||||
def set_temperature(self, temp: float, **kwargs) -> bool:
|
||||
reg = REGISTER_MAP["temp_target"]
|
||||
value = int(float(temp) * reg["scale"]) & 0xFFFF
|
||||
self.client.write_register(reg["addr"], value, slave=self.slave_id)
|
||||
self.data["temp_target"] = temp
|
||||
return True
|
||||
```
|
||||
|
||||
HTTP API 映射:
|
||||
|
||||
```python
|
||||
API_MAP = {
|
||||
"set_temperature": {
|
||||
"method": "POST",
|
||||
"endpoint": "/api/temperature",
|
||||
"body_key": "target",
|
||||
},
|
||||
}
|
||||
```
|
||||
|
||||
SDK 封装:
|
||||
|
||||
```python
|
||||
from my_device_sdk import DeviceController
|
||||
|
||||
class MyDevice:
|
||||
def __init__(self, device_id=None, config=None, **kwargs):
|
||||
self.config = config or {}
|
||||
self.controller = DeviceController(port=self.config.get("port", "COM1"))
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
## 验证
|
||||
|
||||
无需手写注册表 YAML。`@device` 装饰器 + AST 扫描会在启动或检查时生成注册表条目。
|
||||
|
||||
```bash
|
||||
# 1. 模块可导入
|
||||
python -c "from unilabos.devices.<category>.<file> import <ClassName>"
|
||||
|
||||
# 2. 启动测试
|
||||
unilab -g <graph>.json
|
||||
|
||||
# 3. 仅检查注册表
|
||||
unilab --check_mode --skip_env_check
|
||||
```
|
||||
|
||||
仅在旧代码无 `@device`、需要覆盖特殊字段、或做 `--complete_registry` 旧设备补全时,才考虑 YAML。新设备默认不要手写 YAML。
|
||||
|
||||
## 图文件节点模板
|
||||
|
||||
实验图 JSON 中的 `class` 对应 `@device(id=...)`,`config` 会传入 `__init__` 的 `config` 字典:
|
||||
|
||||
```json
|
||||
{
|
||||
"id": "my_device_1",
|
||||
"name": "我的设备",
|
||||
"children": [],
|
||||
"parent": null,
|
||||
"type": "device",
|
||||
"class": "my_device",
|
||||
"position": {"x": 0, "y": 0, "z": 0},
|
||||
"config": {
|
||||
"port": "/dev/ttyUSB0",
|
||||
"baudrate": 9600
|
||||
},
|
||||
"data": {}
|
||||
}
|
||||
```
|
||||
|
||||
工作站需要同时配置 `deck` 和 `children`:
|
||||
|
||||
```json
|
||||
{
|
||||
"nodes": [
|
||||
{
|
||||
"id": "my_station",
|
||||
"type": "device",
|
||||
"class": "my_workstation",
|
||||
"children": ["my_deck"],
|
||||
"config": {},
|
||||
"deck": {
|
||||
"data": {
|
||||
"_resource_child_name": "my_deck",
|
||||
"_resource_type": "unilabos.resources.my_module:MyDeck"
|
||||
}
|
||||
}
|
||||
},
|
||||
{
|
||||
"id": "my_deck",
|
||||
"type": "deck",
|
||||
"class": "MyDeckClass",
|
||||
"parent": "my_station",
|
||||
"config": {"type": "MyDeckClass", "setup": true}
|
||||
}
|
||||
]
|
||||
}
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
## 常见错误清单
|
||||
|
||||
- 缺少 `@device`:设备不会被 AST 扫描发现。
|
||||
- 只有 `@property` 没有 `@topic_config()`:属性不会稳定广播到 `status_types`。
|
||||
- `post_init` 没有 `@not_action`:会被误暴露为动作。
|
||||
- `self.data = {}`:空字典会导致属性读取和 schema 初始数据不稳定,必须预填充每个状态键。
|
||||
- 动作参数重命名:不要把同类设备已有的 `volume` 改成 `volume_ml`,参数名是接口契约。
|
||||
- `status` 使用中文或临时文本:前端和工作流依赖稳定英文状态值。
|
||||
- async 方法中使用 `time.sleep()`:应使用 `await self._ros_node.sleep(seconds)`。
|
||||
- 硬编码串口响应索引:RS-485 响应前可能有噪声字节,应先定位帧头。
|
||||
- 把硬件寄存器单位暴露给用户:对外使用物理单位,驱动内部做 scale 转换。
|
||||
|
||||
@@ -10,8 +10,7 @@ description: Operate Virtual Workbench via REST API — prepare materials, move
|
||||
- **device_id**: `virtual_workbench`
|
||||
- **Python 源码**: `unilabos/devices/virtual/workbench.py`
|
||||
- **设备类**: `VirtualWorkbench`
|
||||
- **当前纳入动作**: 5 个(`auto-prepare_materials`, `auto-move_to_heating_station`, `auto-start_heating`, `auto-move_to_output`, `transfer`)
|
||||
- **暂跳过动作**: `manual_confirm`、扣电测试 `test`(需要启用时先从最新注册表重新提取 schema)
|
||||
- **动作数**: 6(`auto-prepare_materials`, `auto-move_to_heating_station`, `auto-start_heating`, `auto-move_to_output`, `transfer`, `manual_confirm`)
|
||||
- **设备描述**: 模拟工作台,包含 1 个机械臂(每次操作 2s,独占锁)和 3 个加热台(每次加热 60s,可并行)
|
||||
|
||||
### 典型工作流程
|
||||
@@ -152,8 +151,7 @@ curl -s -X POST "$BASE/api/v1/lab/mcp/run/action" \
|
||||
| `auto-start_heating` | `UniLabJsonCommand` |
|
||||
| `auto-move_to_output` | `UniLabJsonCommand` |
|
||||
| `transfer` | `UniLabJsonCommandAsync` |
|
||||
|
||||
> `manual_confirm` 和扣电测试 `test` 当前不纳入本 skill 的推荐操作范围;不要基于历史 JSON 直接调用,需先重新生成并校验 schema。
|
||||
| `manual_confirm` | `UniLabJsonCommand` |
|
||||
|
||||
### 10. 查询任务状态
|
||||
|
||||
@@ -227,9 +225,11 @@ curl -s -X PUT "$BASE/api/v1/edge/material/node" \
|
||||
| `transfer` | `resource` | ResourceSlot | 待转移物料数组 |
|
||||
| `transfer` | `target_device` | DeviceSlot | 目标设备路径 |
|
||||
| `transfer` | `mount_resource` | ResourceSlot | 目标孔位数组 |
|
||||
| `manual_confirm` | `resource` | ResourceSlot | 确认用物料数组 |
|
||||
| `manual_confirm` | `target_device` | DeviceSlot | 确认用目标设备 |
|
||||
| `manual_confirm` | `mount_resource` | ResourceSlot | 确认用目标孔位数组 |
|
||||
|
||||
> `prepare_materials`、`move_to_heating_station`、`start_heating`、`move_to_output` 这 4 个动作**无 Slot 字段**,参数为纯数值/整数。
|
||||
> `manual_confirm` 先跳过,不维护其 Slot 字段表。
|
||||
|
||||
---
|
||||
|
||||
@@ -270,13 +270,3 @@ prepare_materials (count=5)
|
||||
```
|
||||
|
||||
创建节点时,`prepare_materials` 的 5 个 output handle(`channel_1` ~ `channel_5`)分别连接到 5 个 `move_to_heating_station` 节点的 `material_input` handle。每个 `move_to_heating_station` 的 `heating_station_output` 和 `material_number_output` 连接到对应 `start_heating` 的 `station_id_input` 和 `material_number_input`。
|
||||
|
||||
`start_heating` 完成后还需要继续连接到 `move_to_output`,否则加热完成的物料不会移出加热台:
|
||||
|
||||
| source action | source handle | target action | target handle | 传递参数 |
|
||||
| ------------- | ------------- | ------------- | ------------- | -------- |
|
||||
| `auto-prepare_materials` | `channel_N` | `auto-move_to_heating_station` | `material_input` | `material_number` |
|
||||
| `auto-move_to_heating_station` | `heating_station_output` | `auto-start_heating` | `station_id_input` | `station_id` |
|
||||
| `auto-move_to_heating_station` | `material_number_output` | `auto-start_heating` | `material_number_input` | `material_number` |
|
||||
| `auto-start_heating` | `heating_done_station` | `auto-move_to_output` | `output_station_input` | `station_id` |
|
||||
| `auto-start_heating` | `heating_done_material` | `auto-move_to_output` | `output_material_input` | `material_number` |
|
||||
|
||||
@@ -1,8 +1,6 @@
|
||||
# Action Index — virtual_workbench
|
||||
|
||||
当前纳入 5 个动作,按功能分类。每个动作的完整 JSON Schema 在 `actions/<name>.json`。
|
||||
|
||||
暂跳过:`manual_confirm`、扣电测试 `test`。这两个动作需要启用时,先从最新 `req_device_registry_upload.json` 重新提取 schema 并校验参数。
|
||||
6 个动作,按功能分类。每个动作的完整 JSON Schema 在 `actions/<name>.json`。
|
||||
|
||||
---
|
||||
|
||||
@@ -62,18 +60,17 @@
|
||||
|
||||
---
|
||||
|
||||
## 暂跳过动作
|
||||
## 人工确认
|
||||
|
||||
### `manual_confirm`
|
||||
|
||||
创建人工确认节点,等待用户手动确认后继续(含物料转移上下文)。当前先不纳入推荐操作范围。
|
||||
创建人工确认节点,等待用户手动确认后继续(含物料转移上下文)
|
||||
|
||||
- **action_type**: `UniLabJsonCommand`
|
||||
- **Schema**: [`actions/manual_confirm.json`](actions/manual_confirm.json)
|
||||
- **状态**: 暂跳过。源码参数已包含扣电测试相关字段,历史 JSON 可能过期;需要启用时重新提取 schema。
|
||||
|
||||
### `test`
|
||||
|
||||
启动扣电测试。当前先不纳入本 skill。
|
||||
|
||||
- **状态**: 暂跳过。需要启用时从注册表生成 `actions/test.json` 后再补充索引。
|
||||
- **核心参数**: `resource`, `target_device`, `mount_resource`, `timeout_seconds`, `assignee_user_ids`
|
||||
- **占位符字段**:
|
||||
- `resource` — **ResourceSlot**,物料数组
|
||||
- `target_device` — **DeviceSlot**,目标设备路径
|
||||
- `mount_resource` — **ResourceSlot**,目标孔位数组
|
||||
- `assignee_user_ids` — `unilabos_manual_confirm` 类型
|
||||
|
||||
2
.github/workflows/ci-check.yml
vendored
2
.github/workflows/ci-check.yml
vendored
@@ -25,7 +25,7 @@ jobs:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Setup Miniforge
|
||||
uses: conda-incubator/setup-miniconda@v4
|
||||
uses: conda-incubator/setup-miniconda@v3
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
|
||||
4
.github/workflows/conda-pack-build.yml
vendored
4
.github/workflows/conda-pack-build.yml
vendored
@@ -43,7 +43,7 @@ jobs:
|
||||
platform: linux-64
|
||||
env_file: unilabos-linux-64.yaml
|
||||
script_ext: sh
|
||||
- os: macos-15-intel # Intel x86_64
|
||||
- os: macos-15 # Intel (via Rosetta)
|
||||
platform: osx-64
|
||||
env_file: unilabos-osx-64.yaml
|
||||
script_ext: sh
|
||||
@@ -86,7 +86,7 @@ jobs:
|
||||
|
||||
- name: Setup Miniforge (with mamba)
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: conda-incubator/setup-miniconda@v4
|
||||
uses: conda-incubator/setup-miniconda@v3
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
|
||||
8
.github/workflows/deploy-docs.yml
vendored
8
.github/workflows/deploy-docs.yml
vendored
@@ -51,7 +51,7 @@ jobs:
|
||||
fetch-depth: 0
|
||||
|
||||
- name: Setup Miniforge (with mamba)
|
||||
uses: conda-incubator/setup-miniconda@v4
|
||||
uses: conda-incubator/setup-miniconda@v3
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
@@ -84,7 +84,7 @@ jobs:
|
||||
|
||||
- name: Setup Pages
|
||||
id: pages
|
||||
uses: actions/configure-pages@v6
|
||||
uses: actions/configure-pages@v5
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
@@ -105,7 +105,7 @@ jobs:
|
||||
test -f docs/_build/html/index.html && echo "✓ index.html exists" || echo "✗ index.html missing"
|
||||
|
||||
- name: Upload build artifacts
|
||||
uses: actions/upload-pages-artifact@v5
|
||||
uses: actions/upload-pages-artifact@v4
|
||||
if: |
|
||||
github.event.workflow_run.head_branch == 'main' ||
|
||||
(github.event_name == 'workflow_dispatch' && github.event.inputs.deploy_to_pages == 'true')
|
||||
@@ -125,4 +125,4 @@ jobs:
|
||||
steps:
|
||||
- name: Deploy to GitHub Pages
|
||||
id: deployment
|
||||
uses: actions/deploy-pages@v5
|
||||
uses: actions/deploy-pages@v4
|
||||
|
||||
19
.github/workflows/multi-platform-build.yml
vendored
19
.github/workflows/multi-platform-build.yml
vendored
@@ -63,7 +63,7 @@ jobs:
|
||||
- os: ubuntu-latest
|
||||
platform: linux-64
|
||||
env_file: unilabos-linux-64.yaml
|
||||
- os: macos-15-intel # Intel x86_64
|
||||
- os: macos-15 # Intel (via Rosetta)
|
||||
platform: osx-64
|
||||
env_file: unilabos-osx-64.yaml
|
||||
- os: macos-latest # ARM64
|
||||
@@ -101,11 +101,10 @@ jobs:
|
||||
|
||||
- name: Setup Miniforge
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: conda-incubator/setup-miniconda@v4
|
||||
uses: conda-incubator/setup-miniconda@v3
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
python-version: '3.11.14'
|
||||
channels: conda-forge,robostack-staging
|
||||
channel-priority: strict
|
||||
activate-environment: build-env
|
||||
@@ -115,22 +114,24 @@ jobs:
|
||||
- name: Install rattler-build and anaconda-client
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
mamba install -n build-env --override-channels -c conda-forge rattler-build anaconda-client -y
|
||||
mamba install --override-channels -c conda-forge rattler-build anaconda-client -y
|
||||
|
||||
- name: Show environment info
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
conda info
|
||||
conda list -n build-env | grep -E "(rattler-build|anaconda-client)"
|
||||
conda run -n build-env rattler-build --version
|
||||
conda run -n build-env anaconda --version
|
||||
conda list | grep -E "(rattler-build|anaconda-client)"
|
||||
echo "Platform: ${{ matrix.platform }}"
|
||||
echo "OS: ${{ matrix.os }}"
|
||||
|
||||
- name: Build conda package
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
conda run -n build-env rattler-build build -r ./recipes/msgs/recipe.yaml --target-platform ${{ matrix.platform }} -c robostack -c robostack-staging -c conda-forge
|
||||
if [[ "${{ matrix.platform }}" == "osx-arm64" ]]; then
|
||||
rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
|
||||
else
|
||||
rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
|
||||
fi
|
||||
|
||||
- name: List built packages
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
@@ -170,5 +171,5 @@ jobs:
|
||||
run: |
|
||||
for package in $(find ./output -name "*.conda"); do
|
||||
echo "Uploading $package to unilab organization..."
|
||||
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
23
.github/workflows/unilabos-conda-build.yml
vendored
23
.github/workflows/unilabos-conda-build.yml
vendored
@@ -59,7 +59,7 @@ jobs:
|
||||
include:
|
||||
- os: ubuntu-latest
|
||||
platform: linux-64
|
||||
- os: macos-15-intel # Intel x86_64
|
||||
- os: macos-15 # Intel (via Rosetta)
|
||||
platform: osx-64
|
||||
- os: macos-latest # ARM64
|
||||
platform: osx-arm64
|
||||
@@ -94,11 +94,10 @@ jobs:
|
||||
|
||||
- name: Setup Miniforge
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
uses: conda-incubator/setup-miniconda@v4
|
||||
uses: conda-incubator/setup-miniconda@v3
|
||||
with:
|
||||
miniforge-version: latest
|
||||
use-mamba: true
|
||||
python-version: '3.11.14'
|
||||
channels: conda-forge,robostack-staging,uni-lab
|
||||
channel-priority: strict
|
||||
activate-environment: build-env
|
||||
@@ -108,15 +107,13 @@ jobs:
|
||||
- name: Install rattler-build and anaconda-client
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
mamba install -n build-env --override-channels -c conda-forge rattler-build anaconda-client -y
|
||||
mamba install --override-channels -c conda-forge rattler-build anaconda-client -y
|
||||
|
||||
- name: Show environment info
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
conda info
|
||||
conda list -n build-env | grep -E "(rattler-build|anaconda-client)"
|
||||
conda run -n build-env rattler-build --version
|
||||
conda run -n build-env anaconda --version
|
||||
conda list | grep -E "(rattler-build|anaconda-client)"
|
||||
echo "Platform: ${{ matrix.platform }}"
|
||||
echo "OS: ${{ matrix.os }}"
|
||||
echo "Build full package: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.build_full == 'true' }}"
|
||||
@@ -131,7 +128,7 @@ jobs:
|
||||
if: steps.should_build.outputs.should_build == 'true'
|
||||
run: |
|
||||
echo "Building unilabos-env (conda environment dependencies)..."
|
||||
conda run -n build-env rattler-build build -r .conda/environment/recipe.yaml --target-platform ${{ matrix.platform }} -c uni-lab -c robostack-staging -c conda-forge
|
||||
rattler-build build -r .conda/environment/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
|
||||
|
||||
- name: Upload unilabos-env to Anaconda.org (if enabled)
|
||||
if: |
|
||||
@@ -143,7 +140,7 @@ jobs:
|
||||
run: |
|
||||
echo "Uploading unilabos-env to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-env*.conda"); do
|
||||
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: Build unilabos (with pip package)
|
||||
@@ -151,7 +148,7 @@ jobs:
|
||||
run: |
|
||||
echo "Building unilabos package..."
|
||||
# 如果已上传到 Anaconda,从 uni-lab channel 获取 unilabos-env;否则从本地 output 获取
|
||||
conda run -n build-env rattler-build build -r .conda/base/recipe.yaml --target-platform ${{ matrix.platform }} -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
rattler-build build -r .conda/base/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
|
||||
- name: Upload unilabos to Anaconda.org (if enabled)
|
||||
if: |
|
||||
@@ -163,7 +160,7 @@ jobs:
|
||||
run: |
|
||||
echo "Uploading unilabos to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-0*.conda" -o -name "unilabos-[0-9]*.conda"); do
|
||||
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: Build unilabos-full - Only when explicitly requested
|
||||
@@ -173,7 +170,7 @@ jobs:
|
||||
github.event.inputs.build_full == 'true'
|
||||
run: |
|
||||
echo "Building unilabos-full package on ${{ matrix.platform }}..."
|
||||
conda run -n build-env rattler-build build -r .conda/full/recipe.yaml --target-platform ${{ matrix.platform }} -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
rattler-build build -r .conda/full/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
|
||||
|
||||
- name: Upload unilabos-full to Anaconda.org (if enabled)
|
||||
if: |
|
||||
@@ -184,7 +181,7 @@ jobs:
|
||||
run: |
|
||||
echo "Uploading unilabos-full to uni-lab organization..."
|
||||
for package in $(find ./output -name "unilabos-full*.conda"); do
|
||||
conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
|
||||
done
|
||||
|
||||
- name: List built packages
|
||||
|
||||
@@ -1,611 +0,0 @@
|
||||
# PLC 通信标准与设备驱动编写指南(基于 AI4M 工站)
|
||||
|
||||
> 本文档以 `unilabos/devices/workstation/AI4M`(水凝胶检测工站)为参考实现,
|
||||
> 介绍如何将 PLC 控制的实验设备接入 Uni-Lab-OS:包含通信协议选型、节点表标准、
|
||||
> 通信基类、设备驱动、Registry 配置以及调试方法。
|
||||
>
|
||||
> 阅读对象:负责现场调试与设备接入的同学。
|
||||
|
||||
---
|
||||
|
||||
## 0. 总览:一台 PLC 设备从硬件到云端的链路
|
||||
|
||||
```
|
||||
PLC(西门子 / 倍福 / 三菱 / 汇川 / 国产 PLC ...)
|
||||
▲
|
||||
│ 各家 PLC 私有协议(S7 / Modbus / EtherCAT ...)
|
||||
│
|
||||
┌──────────┴──────────┐
|
||||
│ OPC UA Server │ ← 统一在 PLC 侧或独立网关上配置
|
||||
│ (内置或 KEPServer)│
|
||||
└──────────┬──────────┘
|
||||
│ OPC UA over TCP(标准协议)
|
||||
│
|
||||
┌──────────┴──────────┐
|
||||
│ Uni-Lab 设备驱动 │ ← 本教程主体
|
||||
│ AI4MDevice │
|
||||
│ ├─ base_opcua_client.py 通信基类
|
||||
│ ├─ opcua_nodes_*.csv 节点表(标准)
|
||||
│ └─ AI4M.py 动作函数
|
||||
└──────────┬──────────┘
|
||||
│ ROS2 Action / 云端 HTTP
|
||||
▼
|
||||
实验记录本 / 云端调度
|
||||
```
|
||||
|
||||
**统一约定**:所有 PLC 设备**只暴露 OPC UA 接口**给 Uni-Lab,PC 端不直接处理 S7 / Modbus 等底层协议。
|
||||
这是 Uni-Lab 在工站类设备上的 PLC 通信标准。
|
||||
|
||||
---
|
||||
|
||||
## 1. 为什么选 OPC UA 作为标准?
|
||||
|
||||
| 维度 | 自研 TCP/串口协议 | Modbus | **OPC UA** |
|
||||
|---|---|---|---|
|
||||
| 厂家无关 | ✗ | 部分 | **✓** |
|
||||
| 自带类型系统 | ✗ | ✗(裸寄存器) | **✓(Boolean/Int16/Float...)** |
|
||||
| 命名空间 / 节点树 | ✗ | ✗(地址=魔数) | **✓(带名字、可分组)** |
|
||||
| 订阅推送 | ✗ | ✗ | **✓(DataChange Notification)** |
|
||||
| 鉴权 / 加密 | 自己造 | ✗ | **✓** |
|
||||
| 与 PLC 工程师沟通成本 | 高 | 中 | **低(按变量名沟通)** |
|
||||
|
||||
实际接入时,PLC 工程师只需要在 PLC 侧把约定的"上位通讯变量"暴露到 OPC UA Server,
|
||||
我们在 PC 侧就能用 `节点名 + 数据类型` 直接读写,不用管底层是 S7 还是 Modbus。
|
||||
|
||||
---
|
||||
|
||||
## 2. 节点表标准:`opcua_nodes_xxx.csv`
|
||||
|
||||
PLC 侧暴露的所有变量统一**用一张 CSV 表**描述,这是 PC 端和 PLC 端**唯一的接口契约**。
|
||||
位置示例:`unilabos/devices/workstation/AI4M/opcua_nodes_AI4M.csv`。
|
||||
|
||||
### 2.1 列定义
|
||||
|
||||
| 列名 | 是否必填 | 说明 |
|
||||
|---|---|---|
|
||||
| `Name` | ✅ | 节点名(PLC 工程师在 PLC 项目中真实使用的变量名,通常是中文/原始名) |
|
||||
| `EnglishName` | 推荐 | 英文别名,**PC 端代码全部用这个名字**调用 |
|
||||
| `NodeType` | ✅ | `VARIABLE`(变量)或 `METHOD`(方法),AI4M 全部用变量 |
|
||||
| `DataType` | ✅ | `BOOLEAN` / `INT16` / `INT32` / `FLOAT` / `DOUBLE` / `STRING` ... |
|
||||
| `NodeLanguage` | 推荐 | `Chinese` / `English`,配合 `EnglishName` 做映射 |
|
||||
| `NodeId` | ✅ | OPC UA 标准 NodeId,格式 `ns=<namespace>;s=<string>` 或 `ns=<n>;i=<int>` |
|
||||
|
||||
### 2.2 真实样例(节选自 `opcua_nodes_AI4M.csv`)
|
||||
|
||||
| Name | EnglishName | NodeType | DataType | NodeLanguage | NodeId |
|
||||
|---|---|---|---|---|---|
|
||||
| 机器人空闲 | `robot_ready` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|机器人空闲` |
|
||||
| 机器人取烧杯编号 | `robot_pick_beaker_id` | VARIABLE | INT16 | Chinese | `ns=4;s=上位通讯变量\|机器人取烧杯编号` |
|
||||
| 检测1请求参数 | `station_1_request_params` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|检测1请求参数` |
|
||||
| 检测1工艺完成 | `station_1_process_complete` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|检测1工艺完成` |
|
||||
| 磁力搅拌参数设置_C[0].搅拌速度 | `mag_stirrer_c0_stir_speed` | VARIABLE | INT16 | Chinese | `ns=4;s=上位通讯变量\|磁力搅拌参数设置_C[0].搅拌速度` |
|
||||
| 报警复位 | `alarm_reset` | VARIABLE | BOOLEAN | Chinese | `ns=4;s=上位通讯变量\|报警复位` |
|
||||
|
||||
### 2.3 设计规范(必读)
|
||||
|
||||
1. **命名按"角色-编号-属性"分层**,便于代码批量寻址:
|
||||
- `mag_stirrer_c{0..4}_stir_speed`(搅拌仪 0~4 的搅拌速度)
|
||||
- `station_{1..3}_process_complete`(检测站 1~3 的完成信号)
|
||||
- `robot_rack_pick_beaker_{1..5}_complete`(取烧杯 1~5 的完成信号)
|
||||
|
||||
这样在驱动里可以直接 `f"mag_stirrer_c{idx}_stir_speed"` 拼出节点名。
|
||||
|
||||
2. **数据类型与 PLC 侧严格一致**:
|
||||
- `BOOL` → `BOOLEAN`,`INT/WORD` → `INT16/UINT16`,`DINT` → `INT32`,`REAL` → `FLOAT`。
|
||||
- 类型不一致会触发 `BadTypeMismatch`,写入失败。
|
||||
|
||||
3. **NodeId 必须从 PLC 工程或 OPC UA Server 中导出**,不要自己拼。
|
||||
常见格式:
|
||||
- 西门子 1500:`ns=4;s=上位通讯变量|<变量名>`
|
||||
- 倍福 TwinCAT:`ns=4;s=PLC1.MAIN.<变量名>`
|
||||
- KEPServerEX:`ns=2;s=Channel1.Device1.<Tag>`
|
||||
|
||||
4. **每个工站一个独立 CSV**,不要共用。
|
||||
AI4M 中真机用 `opcua_nodes_AI4M.csv`,仿真用 `opcua_nodes_AI4M_sim.csv`。
|
||||
|
||||
---
|
||||
|
||||
## 3. 通信基类架构
|
||||
|
||||
文件:`unilabos/devices/workstation/AI4M/base_opcua_client.py`
|
||||
|
||||
整个通信层分两层:
|
||||
|
||||
```
|
||||
BaseOpcUaClient # 最小可用:连接 + 节点注册 + 读写 + 方法调用
|
||||
▲
|
||||
│ 继承
|
||||
│
|
||||
OpcUaClientWithSubscription # 生产可用:+ 订阅推送 + 缓存 + 自动重连
|
||||
▲
|
||||
│ 继承
|
||||
│
|
||||
AI4MDevice # 业务驱动:在它之上写设备动作函数
|
||||
```
|
||||
|
||||
### 3.1 `BaseOpcUaClient` 核心能力
|
||||
|
||||
```python
|
||||
class BaseOpcUaClient(UniversalDriver):
|
||||
client: Optional[Client] = None
|
||||
_node_registry: Dict[str, OpcUaNodeBase] = {} # name -> Variable/Method
|
||||
_name_mapping: Dict[str, str] = {} # 英文名 -> 中文名
|
||||
_reverse_mapping: Dict[str, str] = {} # 中文名 -> 英文名
|
||||
_found_node_objects: Dict[str, Any] = {} # 缓存 ua.Node 用于订阅
|
||||
|
||||
@classmethod
|
||||
def load_csv(cls, file_path) -> Tuple[List[OpcUaNode], dict, dict]: ...
|
||||
def register_node_list(self, node_list) -> "BaseOpcUaClient": ...
|
||||
def use_node(self, name) -> OpcUaNodeBase: ...
|
||||
def read_node(self, node_name: str) -> str: ... # 返回 JSON
|
||||
def write_node(self, json_input: str) -> str: ...
|
||||
def call_method(self, node_name, *args) -> Tuple[Any, bool]: ...
|
||||
```
|
||||
|
||||
它做的事情可以归纳为四步:
|
||||
|
||||
1. **`load_csv`**:读取节点表,建立 `Name ↔ EnglishName` 双向映射。
|
||||
2. **`register_node_list`**:把节点登记进 `_variables_to_find` 待查找列表。
|
||||
3. **`_connect` → `_find_nodes`**:连上 OPC UA 后,按 `NodeId` 把每个节点解析成 `Variable` / `Method` 对象,放进 `_node_registry`。
|
||||
4. **`use_node(name)`**:业务代码取节点的唯一入口,**支持中英文混用**,找不到会自动重试一次。
|
||||
|
||||
### 3.2 `OpcUaClientWithSubscription` 增强能力
|
||||
|
||||
在 `BaseOpcUaClient` 基础上提供三个生产环境必备的能力:
|
||||
|
||||
#### a) 订阅缓存(高频读零开销)
|
||||
|
||||
```python
|
||||
def _setup_subscriptions(self):
|
||||
self._subscription = self.client.create_subscription(
|
||||
self._subscription_interval, # 默认 500ms
|
||||
SubscriptionHandler(self),
|
||||
)
|
||||
for node_name, node in self._node_registry.items():
|
||||
if node.type == NodeType.VARIABLE and node.node_id:
|
||||
handle = self._subscription.subscribe_data_change(ua_node)
|
||||
self._subscription_handles[node_name] = handle
|
||||
```
|
||||
|
||||
当 PLC 侧变量变化时,`datachange_notification` 回调会把新值写进 `self._node_values[name]`,
|
||||
后续 `get_node_value` 优先读缓存——**业务代码可以放心地写 `while not self.get_node_value(...): time.sleep(1)` 而不用担心 OPC UA 频繁请求**。
|
||||
|
||||
#### b) 智能缓存的 `get_node_value`
|
||||
|
||||
```python
|
||||
def get_node_value(self, name, use_cache=True, force_read=False):
|
||||
# 1. 中英文名归一化
|
||||
chinese_name = self._name_mapping.get(name, name)
|
||||
|
||||
# 2. force_read=True 强制透传到 OPC UA Server
|
||||
if force_read: ...
|
||||
|
||||
# 3. 命中订阅推送 → 直接返回缓存
|
||||
# 4. 命中按需读 + 未过期(cache_timeout=5s)→ 返回缓存
|
||||
# 5. 否则发起 read 并更新缓存
|
||||
```
|
||||
|
||||
#### c) 连接监控 + 自动重连
|
||||
|
||||
后台线程每 30s 调一次 `client.get_namespace_array()` 探活,断线则自动 `disconnect → connect → 重新订阅`,最多重试 5 次。
|
||||
|
||||
### 3.3 数据类型 / 节点类型
|
||||
|
||||
`unilabos/device_comms/opcua_client/node/uniopcua.py`:
|
||||
|
||||
```python
|
||||
class DataType(Enum):
|
||||
BOOLEAN = VariantType.Boolean
|
||||
INT16 = VariantType.Int16
|
||||
INT32 = VariantType.Int32
|
||||
FLOAT = VariantType.Float
|
||||
STRING = VariantType.String
|
||||
# ...
|
||||
|
||||
class NodeType(Enum):
|
||||
VARIABLE = NodeClass.Variable
|
||||
METHOD = NodeClass.Method
|
||||
OBJECT = NodeClass.Object
|
||||
```
|
||||
|
||||
`Variable.write()` 内部会按 `DataType` 做强制类型转换,
|
||||
所以 CSV 里的 `DataType` 列就是"PC 端转换写入值的类型说明书"。
|
||||
|
||||
---
|
||||
|
||||
## 4. 编写设备驱动:以 `AI4MDevice` 为例
|
||||
|
||||
文件:`unilabos/devices/workstation/AI4M/AI4M.py`
|
||||
|
||||
### 4.1 继承通信基类,最小骨架
|
||||
|
||||
```python
|
||||
from typing import Optional
|
||||
from unilabos.devices.workstation.AI4M.base_opcua_client import OpcUaClientWithSubscription
|
||||
|
||||
class AI4MDevice(OpcUaClientWithSubscription):
|
||||
def __init__(
|
||||
self,
|
||||
url: str, # opc.tcp://192.168.1.10:4840
|
||||
deck: Optional[AI4M_deck] = None, # 物料台面(资源树)
|
||||
csv_path: str = None, # 节点表 CSV
|
||||
username: str = None,
|
||||
password: str = None,
|
||||
use_subscription: bool = True,
|
||||
cache_timeout: float = 5.0,
|
||||
subscription_interval: int = 500,
|
||||
*args, **kwargs,
|
||||
):
|
||||
super().__init__(
|
||||
url=url, username=username, password=password,
|
||||
use_subscription=use_subscription,
|
||||
cache_timeout=cache_timeout,
|
||||
subscription_interval=subscription_interval,
|
||||
*args, **kwargs,
|
||||
)
|
||||
|
||||
# 物料台面初始化(见教程 4. 物料系统)
|
||||
self.deck = deck or AI4M_deck(setup=True)
|
||||
self._robot_lock = threading.Lock()
|
||||
|
||||
# 关键:加载节点表
|
||||
if csv_path:
|
||||
self.load_nodes_from_csv(csv_path)
|
||||
```
|
||||
|
||||
`load_nodes_from_csv` 会一次性完成:解析 CSV → 注册节点 → 解析 NodeId → 建立订阅,
|
||||
**之后整个驱动都通过 `self.get_node_value(name)` / `self.set_node_value(name, value)` 操作 PLC**。
|
||||
|
||||
### 4.2 PLC 通信的核心模式:握手协议(Handshake)
|
||||
|
||||
PLC 编程的本质是"扫描周期 + 状态机",PC 端**绝对不能用 fire-and-forget 的方式发指令**。
|
||||
和 PLC 配合的标准模式是 **"PC 写指令 → PC 等待 PLC 回执 → PC 复位指令"**。
|
||||
|
||||
AI4M 中所有 `trigger_*` 函数都遵循以下三种握手范式之一:
|
||||
|
||||
#### 范式 A:脉冲触发 + 完成信号(最常用)
|
||||
|
||||
```python
|
||||
def trigger_init(self) -> dict:
|
||||
# ① 复位上一轮残留
|
||||
self.set_node_value("alarm_reset", True); time.sleep(1.0)
|
||||
self.set_node_value("alarm_reset", False)
|
||||
self.set_node_value("manual_auto_switch", False)
|
||||
|
||||
# ② 等待 PLC 退出自动模式
|
||||
while self.get_node_value("auto_mode"):
|
||||
time.sleep(1.0)
|
||||
|
||||
# ③ 发起初始化脉冲(True → False)
|
||||
self.set_node_value("initialize", True); time.sleep(1.0)
|
||||
self.set_node_value("initialize", False)
|
||||
|
||||
# ④ 等待 PLC 给出完成信号
|
||||
while not self.get_node_value("init finished"):
|
||||
time.sleep(1.0)
|
||||
|
||||
return {"message": "设备初始化完成"}
|
||||
```
|
||||
|
||||
要点:
|
||||
- **"PC 写一个 BOOL 拉高再拉低"** 模拟脉冲,PLC 用上升沿触发动作。
|
||||
- **`get_node_value` 要在 while 循环里轮询**,配合订阅缓存基本无压力。
|
||||
- **每个动作必须有"开始"和"完成"两个独立的 BOOL 节点**,不能复用。
|
||||
|
||||
#### 范式 B:参数下发 + 请求/已执行/完成 三步握手(带数据的工艺)
|
||||
|
||||
```python
|
||||
def trigger_station_process(self, station_id: int, mag_stir_speed: int, ...):
|
||||
request_node = f"station_{station_id}_request_params"
|
||||
params_received_node = f"station_{station_id}_params_received"
|
||||
start_node = f"station_{station_id}_start"
|
||||
complete_node = f"station_{station_id}_process_complete"
|
||||
|
||||
# ① PC 复位三个状态位(避免上一轮影响)
|
||||
self._reset_station_process_flags(station_id)
|
||||
|
||||
# ② 等 PLC 主动请求参数(PLC 准备好了才接收)
|
||||
while not self.get_node_value(request_node):
|
||||
time.sleep(1.0)
|
||||
|
||||
# ③ PC 下发参数(注意:PLC 内部数组是 0-based,PC 暴露给用户是 1-based)
|
||||
station_idx = station_id - 1
|
||||
self.set_node_value(f"mag_stirrer_c{station_idx}_stir_speed", mag_stir_speed)
|
||||
self.set_node_value(f"mag_stirrer_c{station_idx}_heat_temp", mag_stir_heat_temp)
|
||||
self.set_node_value(f"mag_stirrer_c{station_idx}_time_set", mag_stir_time_set)
|
||||
self.set_node_value(f"syringe_pump_{station_idx}_abs_position_set", syringe_pump_abs_pos)
|
||||
|
||||
# ④ PC 通知 PLC "参数已就绪",等 PLC 回复"已执行"
|
||||
self.set_node_value(start_node, True)
|
||||
while not self.get_node_value(params_received_node):
|
||||
time.sleep(1.0)
|
||||
|
||||
# ⑤ 等 PLC 完成整个工艺
|
||||
while not self.get_node_value(complete_node):
|
||||
time.sleep(5.0)
|
||||
|
||||
self.set_node_value(start_node, False) # 复位,方便下一轮
|
||||
return {"station_id": station_id, "message": "..."}
|
||||
```
|
||||
|
||||
四个状态位的语义:
|
||||
|
||||
| 信号 | 方向 | 含义 |
|
||||
|---|---|---|
|
||||
| `station_X_request_params` | **PLC → PC** | "我准备好了,把参数给我" |
|
||||
| `station_X_start` | **PC → PLC** | "参数我已经写好了,开干" |
|
||||
| `station_X_params_received` | **PLC → PC** | "参数我已经吃下了" |
|
||||
| `station_X_process_complete` | **PLC → PC** | "工艺已经做完" |
|
||||
|
||||
**这是 PLC 通信教科书级别的标准范式**,所有带数据下发的动作都建议照抄。
|
||||
|
||||
#### 范式 C:编号下发 + 编号对应的完成信号(多目标互锁)
|
||||
|
||||
```python
|
||||
def trigger_robot_pick_beaker(self, pick_beaker_id: int, place_station_id: int = None, ...):
|
||||
# ① 等机器人空闲(互锁)
|
||||
while not self.get_node_value("robot_ready"):
|
||||
time.sleep(1.0)
|
||||
|
||||
# ② 阶段一:下发"取哪一杯"编号 + 等"取这一杯完成"
|
||||
pick_complete_node = f"robot_rack_pick_beaker_{pick_beaker_id}_complete"
|
||||
self.set_node_value("robot_pick_beaker_id", pick_beaker_id)
|
||||
while not self.get_node_value(pick_complete_node):
|
||||
time.sleep(1.0)
|
||||
|
||||
# ③ 阶段二:下发"放到哪个工站"编号 + 等"放完成"
|
||||
place_complete_node = f"robot_place_station_{place_station_id}_complete"
|
||||
self._reset_station_process_flags(place_station_id)
|
||||
self.set_node_value("robot_place_station_id", place_station_id)
|
||||
while not self.get_node_value(place_complete_node):
|
||||
time.sleep(1.0)
|
||||
```
|
||||
|
||||
要点:
|
||||
- **同一个动作的多个目标用"编号变量 + 编号对应的完成信号"实现**,不要每个目标都开一个开始位。
|
||||
- **配合 Python 端 `threading.Lock()` 做软互锁**,避免多个线程争抢机器人。
|
||||
- **每个阶段有独立的完成信号**,串行等待,不能合并。
|
||||
|
||||
### 4.3 一些容易踩坑的细节
|
||||
|
||||
1. **节点名映射**
|
||||
`set_node_value("alarm_reset", True)` 实际写入的是 CSV 中文名 `报警复位`,
|
||||
`get_node_value` 同理。**业务代码全部用 EnglishName**,不要直接用中文。
|
||||
|
||||
2. **PLC 数组索引和 PC 不一致**
|
||||
AI4M 里 PC 暴露 `station_id ∈ {1, 2, 3}`,但 PLC 内部数组是 `C[0..2]`,
|
||||
驱动里要做 `station_idx = station_id - 1`,**这种映射只在驱动层做一次**,
|
||||
不要让上层(registry / 实验记录本)感知。
|
||||
|
||||
3. **订阅模式下 BOOL 节点的边沿同步**
|
||||
订阅有 ~500ms 延迟。如果你刚 `set_node_value(x, True)` 就立刻 `get_node_value(x)`,
|
||||
读到的可能还是 `False`(订阅还没推回来)。
|
||||
解决方案:**写完后用 `force_read=True` 透传一次** 或加一段 `time.sleep`。
|
||||
|
||||
4. **永远不要忘记复位**
|
||||
`start` 拉 True 后必须有地方拉回 False,否则下一轮 PLC 上升沿不触发。
|
||||
AI4M 在 `_reset_station_process_flags` 中统一做:
|
||||
|
||||
```python
|
||||
def _reset_station_process_flags(self, station_id: int) -> None:
|
||||
self.set_node_value(f"station_{station_id}_process_complete", False)
|
||||
self.set_node_value(f"station_{station_id}_start", False)
|
||||
self.set_node_value(f"station_{station_id}_params_received", False)
|
||||
```
|
||||
|
||||
5. **耗时长的等待 sleep 加大**
|
||||
工艺等待用 `time.sleep(5.0)`,机器人等待用 `time.sleep(1.0)`,初始化等待 `time.sleep(1.0)`,
|
||||
不要全部用 0.1s 轮询,会把日志刷爆。
|
||||
|
||||
---
|
||||
|
||||
## 5. 把驱动接到 Uni-Lab:Registry + Graph
|
||||
|
||||
### 5.1 Registry YAML(动作 schema)
|
||||
|
||||
文件:`unilabos/registry/devices/AI4M_station.yaml`
|
||||
|
||||
```yaml
|
||||
AI4M_station:
|
||||
category: [AI4M_station]
|
||||
class:
|
||||
module: unilabos.devices.workstation.AI4M.AI4M:AI4MDevice # ← 入口类
|
||||
type: python
|
||||
action_value_mappings:
|
||||
auto-trigger_init:
|
||||
schema:
|
||||
description: 设备初始化...
|
||||
properties:
|
||||
goal: { properties: {}, required: [], type: object }
|
||||
result:
|
||||
properties: { message: { type: string } }
|
||||
required: [message]
|
||||
type: object
|
||||
type: object
|
||||
type: UniLabJsonCommand
|
||||
|
||||
auto-trigger_station_process:
|
||||
always_free: true
|
||||
schema:
|
||||
description: 执行检测工艺流程
|
||||
properties:
|
||||
goal:
|
||||
properties:
|
||||
station_id: { type: integer, description: 检测编号 1-3 }
|
||||
mag_stir_stir_speed: { type: integer }
|
||||
mag_stir_heat_temp: { type: integer }
|
||||
mag_stir_time_set: { type: integer }
|
||||
syringe_pump_abs_position_set:{ type: integer }
|
||||
required: [station_id, mag_stir_stir_speed, mag_stir_heat_temp,
|
||||
mag_stir_time_set, syringe_pump_abs_position_set]
|
||||
type: object
|
||||
result: { ... }
|
||||
type: UniLabJsonCommand
|
||||
|
||||
init_param_schema:
|
||||
config:
|
||||
type: object
|
||||
required: [url]
|
||||
properties:
|
||||
url: { type: string, description: OPC UA 服务器地址 }
|
||||
csv_path: { type: string, description: 节点配置 CSV 路径 }
|
||||
deck: { type: string, description: 资源树配置 }
|
||||
username: { type: string }
|
||||
password: { type: string }
|
||||
use_subscription: { type: boolean, default: true }
|
||||
cache_timeout: { type: number, default: 5.0 }
|
||||
subscription_interval: { type: integer, default: 500 }
|
||||
```
|
||||
|
||||
规则总结:
|
||||
- `class.module` 指向驱动类(`module:ClassName`)。
|
||||
- `action_value_mappings` 中的 key 形如 `auto-<方法名>`,对应驱动里的同名 Python 方法。
|
||||
- `schema.goal` 自动转成 ROS2 Action 的 goal 消息,`schema.result` 转 result。
|
||||
- `init_param_schema.config` 对应 `__init__` 的入参,**所有需要现场改的参数都要列出来**(最重要的就是 `url` 和 `csv_path`)。
|
||||
- `always_free: true` 表示该动作不占用工站独占锁(多检测站可并发执行)。
|
||||
|
||||
### 5.2 Graph JSON(实例化)
|
||||
|
||||
文件:`unilabos/devices/workstation/AI4M/AI4M.json`
|
||||
|
||||
```json
|
||||
{
|
||||
"nodes": [
|
||||
{
|
||||
"id": "AI4M_station",
|
||||
"name": "AI4M_station",
|
||||
"type": "device",
|
||||
"class": "AI4M_station",
|
||||
"children": ["AI4M_deck"],
|
||||
"parent": null,
|
||||
"config": {
|
||||
"url": "opc.tcp://192.168.1.10:4840",
|
||||
"csv_path": "opcua_nodes_AI4M.csv",
|
||||
"deck": {
|
||||
"data": {
|
||||
"_resource_child_name": "AI4M_deck",
|
||||
"_resource_type": "unilabos.devices.workstation.AI4M.decks:AI4M_deck"
|
||||
}
|
||||
}
|
||||
}
|
||||
},
|
||||
{
|
||||
"id": "AI4M_deck",
|
||||
"type": "deck",
|
||||
"class": "AI4M_deck",
|
||||
"parent": "AI4M_station",
|
||||
"config": { "type": "AI4M_deck" }
|
||||
}
|
||||
]
|
||||
}
|
||||
```
|
||||
|
||||
要点:
|
||||
- `class` 必须和 Registry YAML 的顶层 key 完全一致(`AI4M_station`)。
|
||||
- `config` 字段**逐字传给驱动 `__init__`**,所以 Graph JSON = "现场参数表"。
|
||||
- 多套相同设备时拷贝一份,把 `id` / `url` 改掉即可(参考 `AI4M002_station`)。
|
||||
|
||||
### 5.3 启动命令(来自 `start.md`)
|
||||
|
||||
```cmd
|
||||
# 真机
|
||||
python unilabos/app/main.py -g unilabos/devices/workstation/AI4M/AI4M.json `
|
||||
--ak <ak> --sk <sk> --upload_registry --addr <api_url> --disable_browser
|
||||
|
||||
# 仿真(KEPServerEX 跑在本机 49320 端口)
|
||||
python unilabos/app/main.py -g unilabos/devices/workstation/AI4M/AI4Msim.json `
|
||||
--ak <ak> --sk <sk> --upload_registry --disable_browser
|
||||
```
|
||||
|
||||
`--upload_registry` 会把 `AI4M_station.yaml` 的 schema 上传到云端,
|
||||
之后实验记录本就能看到所有 `auto-*` 动作。
|
||||
|
||||
---
|
||||
|
||||
## 6. 调试方法
|
||||
|
||||
### 6.1 用 KEPServerEX 仿真 PLC
|
||||
|
||||
不带 PLC 的开发机上,可以用 KEPServerEX(或 `python-opcua` 自建 server)模拟。
|
||||
AI4M 提供了一份仿真节点表 `opcua_nodes_AI4M_sim.csv`,**只改 NodeId 不改语义**,
|
||||
所以驱动代码无需任何改动即可在本机调试。
|
||||
|
||||
### 6.2 单独跑驱动(不开 ROS)
|
||||
|
||||
在驱动文件末尾的 `if __name__ == '__main__':` 段:
|
||||
|
||||
```python
|
||||
if __name__ == '__main__':
|
||||
A4 = AI4MDevice(
|
||||
url="opc.tcp://192.168.1.10:4840",
|
||||
csv_path="opcua_nodes_AI4M.csv",
|
||||
)
|
||||
A4.trigger_init()
|
||||
print("初始化完成")
|
||||
A4.trigger_robot_pick_beaker(1, 1)
|
||||
```
|
||||
|
||||
**新动作上线前一定要在这里裸跑一遍**,确认握手时序正确,再往上接 ROS。
|
||||
|
||||
### 6.3 看日志判断卡在哪
|
||||
|
||||
`base_opcua_client.py` 的日志已经覆盖了所有关键节点:
|
||||
|
||||
```
|
||||
✓ 客户端已连接!
|
||||
✓ 找到变量节点: 'robot_ready', NodeId: ns=4;s=...
|
||||
✓ 已订阅节点: robot_ready
|
||||
✓ 节点查找完成:所有 142 个节点均已找到
|
||||
```
|
||||
|
||||
如果看到 `⚠ 以下 N 个节点未找到`,**99% 是 CSV 里的 NodeId 写错了**,回去对一下 PLC 工程导出的 NodeId。
|
||||
|
||||
### 6.4 检查节点是否能直接读写
|
||||
|
||||
```python
|
||||
# 透传读,绕过订阅缓存
|
||||
A4.get_node_value("robot_ready", force_read=True)
|
||||
|
||||
# 直接读 JSON 形式(适合从 HTTP/调试面板调)
|
||||
A4.read_node("robot_ready")
|
||||
|
||||
# 写
|
||||
A4.set_node_value("alarm_reset", True)
|
||||
A4.write_node('{"node_name": "alarm_reset", "value": false}')
|
||||
```
|
||||
|
||||
---
|
||||
|
||||
## 7. 接入新 PLC 设备的 Checklist
|
||||
|
||||
接到一台新工站时,按下面顺序做就能保证不漏:
|
||||
|
||||
- [ ] 1. 让 PLC 工程师把上位通讯变量整理到 OPC UA Server,导出 NodeId 清单。
|
||||
- [ ] 2. 在 `unilabos/devices/workstation/<设备名>/` 下新建目录,复制 `AI4M/base_opcua_client.py` 不动。
|
||||
- [ ] 3. 整理 `opcua_nodes_<设备名>.csv`,6 列填齐,并补上 `EnglishName`。
|
||||
- [ ] 4. 在该目录写设备驱动 `<设备名>.py`,继承 `OpcUaClientWithSubscription`:
|
||||
- [ ] `__init__` 调用 `super().__init__` + `self.load_nodes_from_csv(csv_path)`。
|
||||
- [ ] 每个动作函数用范式 A/B/C 写握手协议。
|
||||
- [ ] 每个动作函数都返回 `dict`,至少含 `message` 字段。
|
||||
- [ ] 5. 在 `unilabos/registry/devices/` 下新建 `<设备名>_station.yaml`,配置 `init_param_schema` 和 `action_value_mappings`。
|
||||
- [ ] 6. 在该目录新建 `<设备名>.json`(Graph),填好 `url` 和 `csv_path`。
|
||||
- [ ] 7. 用 `if __name__ == '__main__':` 单独跑驱动确认握手 OK。
|
||||
- [ ] 8. 用 `python unilabos/app/main.py -g <Graph> --upload_registry ...` 上线,到实验记录本下发动作回归。
|
||||
|
||||
---
|
||||
|
||||
## 8. 参考实现速查
|
||||
|
||||
| 关注点 | 在 AI4M 中看哪里 |
|
||||
|---|---|
|
||||
| OPC UA 通信基类 | `base_opcua_client.py` |
|
||||
| 节点定义类型系统 | `unilabos/device_comms/opcua_client/node/uniopcua.py` |
|
||||
| 节点表 CSV 标准 | `opcua_nodes_AI4M.csv` |
|
||||
| 设备驱动入口类 | `AI4M.py: AI4MDevice` |
|
||||
| 握手范式 A(脉冲+完成) | `AI4M.py: trigger_init` |
|
||||
| 握手范式 B(请求/参数/完成) | `AI4M.py: trigger_station_process` |
|
||||
| 握手范式 C(编号+完成) | `AI4M.py: trigger_robot_pick_beaker` |
|
||||
| 自动模式批量参数下发 | `AI4M.py: download_auto_params` |
|
||||
| Registry schema | `unilabos/registry/devices/AI4M_station.yaml` |
|
||||
| Graph 实例化 | `AI4M.json` / `AI4Msim.json` |
|
||||
| 启动命令 | `start.md` |
|
||||
914
plan/2026-05-20_11_resource_material_sync_guidance_draft.md
Normal file
914
plan/2026-05-20_11_resource_material_sync_guidance_draft.md
Normal file
@@ -0,0 +1,914 @@
|
||||
# Draft: Resource And Material Sync Guidance For Sirna And Similar Bioyond Systems
|
||||
|
||||
Status: draft for discussion, not an implementation mandate.
|
||||
|
||||
This note triangulates across five source categories with different authority:
|
||||
|
||||
1. `docs/developer_guide/examples/workstation_architecture.md`: desired shape
|
||||
and vocabulary. It is a design target, not proof that the current code has
|
||||
every behavior.
|
||||
2. `BioyondWorkstation`, `BioyondResourceSynchronizer`, and shared graphio code:
|
||||
the current compatibility anchor. New guidance should mostly preserve this
|
||||
lifecycle and extend it deliberately.
|
||||
3. Existing non-Sirna Bioyond stations: practical examples of how the shared
|
||||
base is used, including shortcuts that should not become policy.
|
||||
4. Sirna implementation, plans, findings, and guide notes: stress-test evidence.
|
||||
They expose real missing cases, but the current Sirna code is not the
|
||||
architecture authority because parts were added without fully aligning to the
|
||||
shared base.
|
||||
5. UniLabOS resource framework behavior around PLR resources,
|
||||
`ResourceTreeSet`, serialize/deserialize, and `update_resource(resources=...)`.
|
||||
|
||||
The short recommendation is:
|
||||
|
||||
Keep the shared Bioyond workstation lifecycle as the center of gravity. Evolve
|
||||
the shared synchronizer with small project hooks for classification, ID-based
|
||||
resolution, and non-slot material handling, rather than letting Sirna become a
|
||||
parallel synchronization model. For Sirna, those hooks should resolve placement
|
||||
by Bioyond IDs, distinguish physical slot labware from reagent liquid contents,
|
||||
preserve Bioyond IDs in `unilabos_extra`, mutate the local PLR deck, and publish
|
||||
the full deck through `update_resource(resources=[deck])`.
|
||||
|
||||
Do not treat every Bioyond stock row as a deck resource.
|
||||
|
||||
## Evidence Weighting
|
||||
|
||||
This task is not a Sirna implementation retrospective. It is a best-practice
|
||||
alignment pass across the architecture target, the shared base class, observed
|
||||
station behavior, and Sirna's newly exposed edge cases.
|
||||
|
||||
Use the sources this way:
|
||||
|
||||
- Architecture doc: ask "what shape should this system eventually have?"
|
||||
- Shared Bioyond base: ask "what behavior must remain compatible today?"
|
||||
- Other Bioyond stations: ask "what patterns are already working in practice?"
|
||||
- Sirna current code and notes: ask "what did the base model fail to handle, and
|
||||
which Sirna fixes conflict with the shared lifecycle?"
|
||||
- Live API/schema evidence: ask "what is true for this deployment's material,
|
||||
warehouse, and coordinate data?"
|
||||
|
||||
The Sirna AGENT_GUIDE is useful for finding caveats and prior investigations,
|
||||
but it should not be cited as an independent source of truth when source code,
|
||||
framework behavior, live API evidence, or architecture docs can answer the same
|
||||
question.
|
||||
|
||||
## Mental Model
|
||||
|
||||
There are three resource worlds. Confusing them is the main source of bugs.
|
||||
|
||||
| World | Owner | Purpose | Recommended truth |
|
||||
| --- | --- | --- | --- |
|
||||
| Bioyond/LIMS | Bioyond APIs through `BioyondV1RPC` | External stock, material IDs, warehouse IDs, location IDs, inbound/outbound side effects | External material truth |
|
||||
| PLR deck | Workstation driver | Runtime workstation material layout, warehouse occupancy, liquid contents | Local mutation surface |
|
||||
| UniLabOS resource tree | `ResourceTreeSet` / ROS node / host resource APIs | Canonical UniLabOS/cloud representation | Framework/cloud truth |
|
||||
|
||||
The architecture guide describes `Deck` as the local material system and
|
||||
`ResourceSynchronizer` as the optional external-system bridge
|
||||
(`docs/developer_guide/examples/workstation_architecture.md:221`). The broader
|
||||
framework serializes PLR objects into `ResourceTreeSet`, whose resource dicts
|
||||
carry `id`, `uuid`, `parent_uuid`, `type`, `class`, `pose`, `config`, `data`,
|
||||
and `extra` (`unilabos/resources/resource_tracker.py:107`).
|
||||
|
||||
Therefore the correct path is:
|
||||
|
||||
```text
|
||||
Bioyond rows
|
||||
-> normalized material records
|
||||
-> preserve Bioyond materialTypeMode: Sample / Consumables / Reagent
|
||||
-> resolve material/location/warehouse IDs
|
||||
-> choose UniLabOS handling for that mode
|
||||
-> mutate PLR deck
|
||||
-> ResourceTreeSet.from_plr_resources([deck])
|
||||
-> ROS update_resource(resources=[deck])
|
||||
-> host/cloud resource-tree update
|
||||
```
|
||||
|
||||
Avoid direct cloud JSON patches and avoid treating Bioyond records as already
|
||||
being UniLabOS resource nodes.
|
||||
|
||||
## Target Architecture
|
||||
|
||||
The ideal architecture in `workstation_architecture.md` is still the right
|
||||
direction:
|
||||
|
||||
1. `WorkstationBase` owns the local `deck`, workflow state, and hardware
|
||||
interface.
|
||||
2. `ResourceSynchronizer` owns external material synchronization.
|
||||
3. `BioyondResourceSynchronizer` owns the Bioyond-specific use of
|
||||
`BioyondV1RPC`.
|
||||
4. `ROS2WorkstationNode.update_resource(resources)` owns the UniLabOS/cloud
|
||||
resource-tree update.
|
||||
5. Optional HTTP report handlers may trigger local deck mutation, external sync,
|
||||
and cloud publication.
|
||||
|
||||
The documented startup sequence is:
|
||||
|
||||
1. Create workstation.
|
||||
2. Initialize PLR deck and warehouses.
|
||||
3. Create Bioyond RPC hardware interface.
|
||||
4. Create resource synchronizer.
|
||||
5. `sync_from_external()`.
|
||||
6. Initialize ROS node and children.
|
||||
7. `post_init(ros_node)`.
|
||||
8. Upload `resources=[deck]`.
|
||||
|
||||
See `docs/developer_guide/examples/workstation_architecture.md:308`,
|
||||
`docs/developer_guide/examples/workstation_architecture.md:497`, and
|
||||
`docs/developer_guide/examples/workstation_architecture.md:737`.
|
||||
|
||||
Important caveat: that document is the hope. It is still valuable because it
|
||||
names the desired responsibilities, but current Bioyond stations implement a
|
||||
more limited, best-effort side-effect sync. When the doc and current code
|
||||
diverge, use the doc to choose direction and the shared base code to choose the
|
||||
next compatible step.
|
||||
|
||||
## Current Practical Behavior
|
||||
|
||||
The shared `BioyondWorkstation` implementation is the current behavioral
|
||||
baseline. It does this today:
|
||||
|
||||
1. Requires a deck.
|
||||
2. Reconstructs `deck.warehouses` from deck children/config when needed.
|
||||
3. Creates `BioyondV1RPC`.
|
||||
4. Installs `BioyondResourceSynchronizer`.
|
||||
5. Immediately calls `sync_from_external()`.
|
||||
6. Later, in `post_init`, publishes the whole deck with
|
||||
`ROS2DeviceNode.run_async_func(self._ros_node.update_resource, True,
|
||||
resources=[self.deck])`.
|
||||
|
||||
Relevant code:
|
||||
|
||||
- `BioyondResourceSynchronizer` is defined in
|
||||
`unilabos/devices/workstation/bioyond_studio/station.py:117`.
|
||||
- `sync_from_external()` fetches stock `typeMode` 0, 1, and 2, then passes all
|
||||
rows to `resource_bioyond_to_plr(...)`
|
||||
(`unilabos/devices/workstation/bioyond_studio/station.py:147`).
|
||||
- `BioyondWorkstation.__init__` installs the synchronizer and syncs immediately
|
||||
(`unilabos/devices/workstation/bioyond_studio/station.py:856`).
|
||||
- `post_init()` uploads the deck (`unilabos/devices/workstation/bioyond_studio/station.py:893`).
|
||||
- `resource_tree_add()` performs Bioyond create/inbound side effects
|
||||
(`unilabos/devices/workstation/bioyond_studio/station.py:958`).
|
||||
|
||||
This practical behavior works for simple physical-resource stock import, but it
|
||||
does not provide full continuous two-way sync, conflict resolution, or reliable
|
||||
stale-state cleanup. In particular:
|
||||
|
||||
- Re-fetching stock does not clearly clear stale local deck state first.
|
||||
- Local-to-external update no-ops unless `unilabos_extra["update_resource_site"]`
|
||||
is present.
|
||||
- `process_material_change_report()` is mostly TODO-level in the base station.
|
||||
- Some station-specific code bypasses the shared synchronizer with direct LIMS
|
||||
calls.
|
||||
- Some existing stations contain shortcuts that should not be copied, such as
|
||||
duplicate initialization, stale globals, or hardcoded warehouse/axis cases.
|
||||
|
||||
Treat current Bioyond behavior as operationally useful and compatibility
|
||||
important, not as proof that the ideal architecture is already achieved. The
|
||||
goal is to tighten this base path, not replace it with a Sirna-only path.
|
||||
|
||||
## Recommended Shared Pipeline
|
||||
|
||||
For Sirna and similar Bioyond systems, the base synchronizer should evolve from
|
||||
the current shared path into one shared pipeline with small project hooks:
|
||||
|
||||
```text
|
||||
sync_from_external()
|
||||
fetch stock rows from Bioyond
|
||||
update RPC material cache
|
||||
normalize rows into a common internal shape
|
||||
preserve materialTypeMode: Sample / Consumables / Reagent
|
||||
resolve warehouse/location by Bioyond IDs when available
|
||||
choose handling for the row's mode
|
||||
apply Sample / Consumables rows as mapped slot labware by default
|
||||
apply Reagent rows as physical reagent labware or liquid content by evidence
|
||||
report unknown modes or unmapped handling loudly
|
||||
publish deck if deck changed and ROS node is available
|
||||
```
|
||||
|
||||
Suggested extension points:
|
||||
|
||||
```python
|
||||
class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
def external_material_mode(self, row: dict) -> str:
|
||||
return row["materialTypeMode"] # Sample | Consumables | Reagent
|
||||
|
||||
def resolve_external_row(self, row: dict) -> dict:
|
||||
...
|
||||
|
||||
def apply_external_row(self, row: dict, mode: str, resolved: dict) -> None:
|
||||
...
|
||||
```
|
||||
|
||||
The base class should continue to own:
|
||||
|
||||
- stock fetches for `typeMode` 0/1/2;
|
||||
- material-cache refresh;
|
||||
- common normalization;
|
||||
- mode validation for `Sample` / `Consumables` / `Reagent`;
|
||||
- publication orchestration;
|
||||
- error aggregation;
|
||||
- stale-state policy once agreed.
|
||||
|
||||
Project code should own only the parts that are truly deployment-specific:
|
||||
|
||||
- material type/mode to PLR class mapping;
|
||||
- project-local handling inside `Sample` / `Consumables` / `Reagent`;
|
||||
- project-local warehouse ID/name mapping;
|
||||
- project-local coordinate conventions;
|
||||
- special row handling such as Sirna reagent-as-liquid.
|
||||
|
||||
This keeps existing Bioyond stations close to the same lifecycle while still
|
||||
absorbing the Sirna lessons that the earlier base did not model. The default
|
||||
hook behavior can remain "Sample/Consumables/Reagent rows become mapped slot
|
||||
labware" for simpler stations; Sirna should override Reagent handling where
|
||||
evidence requires liquid-content behavior.
|
||||
|
||||
## Sirna Findings To Feed Back Into Shared Design
|
||||
|
||||
Treat Sirna as a stress test for the shared base, not as a replacement design.
|
||||
It raises real questions that earlier stations did not need to answer:
|
||||
|
||||
- within the `Reagent` mode, some external rows may be liquid contents rather
|
||||
than slot-occupying reagent labware;
|
||||
- placement should be ID-first where Bioyond supplies material/location IDs;
|
||||
- warehouse and axis metadata must survive serialize/deserialize;
|
||||
project-specific mode handling is available.
|
||||
|
||||
For Sirna-like deployments, the old implicit rule "stock row equals PLR
|
||||
resource" is too coarse. For simpler deployments, it can remain the default
|
||||
mode-handling behavior.
|
||||
|
||||
### IDs Win
|
||||
|
||||
Placement identity should prefer:
|
||||
|
||||
```text
|
||||
materialId
|
||||
locationId
|
||||
materialTypeId
|
||||
warehouseId / whid
|
||||
```
|
||||
|
||||
Display/debug fields are not identity:
|
||||
|
||||
```text
|
||||
materialName
|
||||
materialCode
|
||||
locationCode
|
||||
locationShowName
|
||||
warehouseName / whName
|
||||
```
|
||||
|
||||
`locationCode` such as `1-1` is not globally unique. It can exist in multiple
|
||||
warehouses. Code-only resolution may be kept as a diagnostic fallback, but it
|
||||
must raise on ambiguity.
|
||||
|
||||
The current Sirna ID-first resolver is useful source evidence for this direction
|
||||
(`unilabos/devices/workstation/bioyond_studio/sirna_station/sirna_station.py:3659`).
|
||||
The Sirna mega plan captures the same concern, but the implementation and live
|
||||
Bioyond IDs are the stronger evidence.
|
||||
|
||||
### Bioyond Modes And UniLabOS Handling Are Different
|
||||
|
||||
Bioyond has three primary material modes in this context:
|
||||
|
||||
```text
|
||||
Sample
|
||||
Consumables
|
||||
Reagent
|
||||
```
|
||||
|
||||
Those modes should be preserved as the external taxonomy. UniLabOS still needs a
|
||||
handling decision inside the mode: should the row create/place a physical PLR
|
||||
resource, or update contents on an already-placed parent resource?
|
||||
|
||||
Physical slot resources include things like:
|
||||
|
||||
- tip racks;
|
||||
- plates;
|
||||
- cell culture plates;
|
||||
- empty trough/bottle labware;
|
||||
- other objects that occupy a warehouse slot.
|
||||
|
||||
Reagents are contents of a parent labware when the row describes a liquid rather
|
||||
than a physical holder. For Sirna, Bioyond `stock_material(typeMode=2)` returns
|
||||
`materialTypeMode="Reagent"` rows; those rows still need evidence-based handling
|
||||
as either physical reagent labware or reagent liquid content. The finding in
|
||||
`temp_benyao/sirna/_findings/2026-05-07_reagents_vs_resources.md:6` records the
|
||||
bug: the generic path can fall back to `RegularContainer`, fail registry lookup,
|
||||
and drop reagent rows such as `试剂槽裂解液/Betame`.
|
||||
|
||||
Recommended behavior:
|
||||
|
||||
1. Validate `materialTypeMode` as `Sample`, `Consumables`, or `Reagent`.
|
||||
2. For `Sample` and `Consumables`, default to mapped slot labware: instantiate
|
||||
the mapped PLR class and place it into the resolved warehouse slot.
|
||||
3. For `Reagent`, decide whether the row represents physical reagent labware or
|
||||
reagent liquid content from material type evidence, row shape, and live data.
|
||||
4. For physical reagent labware, place the mapped PLR resource in the resolved
|
||||
slot.
|
||||
5. For reagent liquid content, find the parent trough/bottle and attach liquid
|
||||
metadata to its tracker.
|
||||
6. Preserve Bioyond IDs in `parent.unilabos_extra["reagent_bioyond_ids"]`.
|
||||
7. Make liquid attachment idempotent by Bioyond material ID.
|
||||
8. If the parent labware is missing or the mode/handling cannot be resolved,
|
||||
defer or log with IDs; do not guess.
|
||||
|
||||
The existing Sirna helper `_attach_liquid_to_parent()` already follows the
|
||||
idempotent metadata direction
|
||||
(`unilabos/devices/workstation/bioyond_studio/sirna_station/sirna_station.py:4074`).
|
||||
|
||||
### The `0003` Question Must Stay Evidence-Based
|
||||
|
||||
Do not blindly map `materialTypeCode 0003` to `BioyondSirna_ReagentTrough`.
|
||||
|
||||
If live/schema evidence says a `0003` row is physical trough labware, map it to
|
||||
a PLR resource class. If evidence says it is liquid content, attach it to the
|
||||
parent trough. If evidence is contradictory, mark it unsupported and log the
|
||||
Bioyond IDs.
|
||||
|
||||
Treat this as an open design decision until source/schema/live evidence settles
|
||||
the row shape. The Sirna plan records the question, but it should not decide the
|
||||
mapping by itself.
|
||||
|
||||
### Sirna Warehouse And Axis Rules Are Project-Local
|
||||
|
||||
Sirna warehouse layout and axis conventions must be verified from Sirna source,
|
||||
Sirna schema, current deck behavior, and live/read-only Sirna APIs when
|
||||
available. Do not import Peptide, reaction, dispensing, or cell station layout
|
||||
truth.
|
||||
|
||||
For Sirna specifically, the current integrated deck display should be treated as
|
||||
the good baseline. The prior col-row slot-key fix is already present in the
|
||||
deck/graphio path, and any remaining x/y or y-reverse correction should be
|
||||
handled through shared warehouse metadata and shared graphio/display mapping
|
||||
rather than by reshaping the Sirna station display ad hoc.
|
||||
|
||||
### Display Geometry: Evidence Before Axis Values
|
||||
|
||||
Peptide resource sync should not be treated as a validated model, but its
|
||||
UniLabOS display work is useful and should influence this guidance.
|
||||
|
||||
Confirmed Peptide behavior:
|
||||
|
||||
- Peptide live warehouse evidence found `自动化堆栈` with 170 locations where
|
||||
`code="10-17"` appears at `x=17, y=10`
|
||||
(`../Uni-Lab-OS-Peptide/temp_benyao/peptide/_findings/2026-05-13_1404_peptide_col_row_deck.md:6`).
|
||||
- Peptide's current display convention is Peptide-specific evidence:
|
||||
`bioyond_axis="xy_col_row"` and `bioyond_key_axis="col_row"` in the current
|
||||
Peptide station implementation. Do not copy that pair into Sirna or any other
|
||||
project without live warehouse evidence for that target system. With this
|
||||
Peptide combination, graphio does not apply the legacy x/y swap
|
||||
(`../Uni-Lab-OS-Peptide/unilabos/resources/graphio.py:868`).
|
||||
- Peptide models the main automation stack as 17 visual rows by 10 visual
|
||||
columns while preserving labels such as `10-17`
|
||||
(`../Uni-Lab-OS-Peptide/unilabos/resources/bioyond/decks.py:308`).
|
||||
- Peptide warehouses and deck child positions use `frontend_y_flip=True` /
|
||||
`_frontend_y_flipped_coordinate(...)` so stored PLR coordinates compensate for
|
||||
the frontend y-axis inversion
|
||||
(`../Uni-Lab-OS-Peptide/unilabos/resources/bioyond/decks.py:299`;
|
||||
`temp_benyao/peptide/_findings/2026-05-13_1514_frontend_y_flip_layout.md:6`).
|
||||
- The older Peptide graph-layout note is stale for the Sirna discussion. The
|
||||
current Sirna integrated station/deck display is a good baseline; the reusable
|
||||
Peptide lesson is axis metadata and frontend y-reverse compatibility.
|
||||
- Peptide tests encode the intended behavior: `10-17` lands at row 17 /
|
||||
column 10, and after frontend y-flip the displayed site positions match the
|
||||
expected top-to-bottom layout
|
||||
(`../Uni-Lab-OS-Peptide/temp_benyao/peptide/tests/test_peptide_deck_layout.py:60`).
|
||||
|
||||
Guidance for Sirna and similar systems:
|
||||
|
||||
1. Treat `bioyond_axis` and `bioyond_key_axis` as two separate concepts:
|
||||
- `bioyond_axis` describes how Bioyond numeric `x/y` map to visual axes.
|
||||
- `bioyond_key_axis` describes how slot labels such as `10-17` are generated
|
||||
or preserved.
|
||||
2. Do not infer display orientation from label strings alone. Both `row_col`
|
||||
and `col_row` can preserve the same final label text while producing
|
||||
different visual layouts and graphio swap behavior.
|
||||
3. Use live/read-only `code/x/y` evidence for each project and each warehouse
|
||||
family before choosing axis metadata.
|
||||
4. Keep visual orientation fixes separate from material identity. IDs and slot
|
||||
labels determine registration; display dimensions and frontend y-flip only
|
||||
determine how the deck appears.
|
||||
5. Author intended display coordinates first, then convert stored y coordinates
|
||||
for the active frontend convention:
|
||||
- deck child stored y = `deck_height - display_y - child_height`;
|
||||
- warehouse site stored y = `warehouse_height - display_y - site_height`;
|
||||
- graph-level y values should be transformed only when the active frontend
|
||||
convention requires it.
|
||||
6. Preserve the current Sirna display as the baseline unless concrete frontend
|
||||
evidence shows a y-reverse problem. Do not change station/deck graph
|
||||
semantics just to match stale Peptide layout notes.
|
||||
7. Add layout tests that assert:
|
||||
- warehouse `num_items_x`, `num_items_y`, capacity, first key, and last key;
|
||||
- representative `code/x/y` examples land on the intended site key;
|
||||
- frontend y-flip produces expected displayed positions;
|
||||
- generated deck children do not overlap in displayed coordinates.
|
||||
8. When borrowing from Peptide, borrow the evidence pattern: live discovery,
|
||||
axis/key-axis metadata, y-flip tests, and display fixtures. Do not borrow a
|
||||
literal axis pair or Peptide resource-sync behavior as a validated path.
|
||||
|
||||
Concrete live discovery workflow:
|
||||
|
||||
1. Prefer the reusable read-only probe pattern before reading old findings:
|
||||
|
||||
```bash
|
||||
python3 temp_benyao/sirna/tests/probe_readonly_storage_inventory.py \
|
||||
--base-url <api_host> \
|
||||
--api-key <api_key> \
|
||||
--output temp_benyao/<project>/_logs/<timestamp>_readonly_storage_inventory_probe.json
|
||||
```
|
||||
|
||||
This probe checks swagger candidates, project storage/location endpoints,
|
||||
material type endpoints, `warehouse-info-by-mat-type-id`, and `stock-material`,
|
||||
then writes a redacted evidence file and a merged warehouse summary.
|
||||
|
||||
2. For Sirna quick checks, `temp_benyao/sirna/tests/discover_sirna_warehouses.py`
|
||||
is the narrower historical helper. Treat it as a template unless it has been
|
||||
parameterized for the target config.
|
||||
3. Query `/api/storage/location/locations-by-type?type=0&typeMode=0&materialType=0`
|
||||
first for stack names, warehouse IDs, full slot lists, `code`, `x`, `y`, `z`,
|
||||
and display mode. This endpoint is the topology source when available.
|
||||
4. Cross-reference with `/api/lims/storage/material-types` and
|
||||
`/api/lims/storage/warehouse-info-by-mat-type-id` to learn material-type
|
||||
placement constraints. Use `stock-material` only for occupied-slot evidence;
|
||||
it cannot reveal empty topology.
|
||||
5. Infer `bioyond_key_axis` from how slot labels must be generated or preserved,
|
||||
and infer `bioyond_axis` from how raw Bioyond `x/y` must map to PLR holder
|
||||
indices. A label such as `10-17` alone is ambiguous; compare it to the same
|
||||
record's `x/y`, and use boundary examples from non-square stacks.
|
||||
6. Encode the discovered convention on the warehouse resource, not in a one-off
|
||||
station branch. The metadata must serialize/deserialize with the warehouse
|
||||
because graph load and cloud sync rebuild resources.
|
||||
7. Add or update layout tests before changing Sirna display behavior. For Sirna,
|
||||
test against the current good display first, then only change shared x/y or
|
||||
y-reverse mapping if the fixture demonstrates a real mismatch.
|
||||
|
||||
### Deserialize Must Be Idempotent
|
||||
|
||||
This is confirmed framework behavior, not a possible risk. Resource publication
|
||||
builds `ResourceTreeSet` from live PLR resources by calling
|
||||
`resource.serialize()` and `resource.serialize_all_state()`
|
||||
(`unilabos/resources/resource_tracker.py:547`). Readback/reconstruction goes
|
||||
through `ResourceTreeSet.to_plr_resources()`, finds the PLR subclass, calls
|
||||
`sub_cls.deserialize(...)`, then restores PLR state, UUIDs, and `unilabos_extra`
|
||||
(`unilabos/resources/resource_tracker.py:637`). `ResourceTreeSet.dump()` also
|
||||
serializes resource nodes while excluding `children` from each individual node
|
||||
record (`unilabos/resources/resource_tracker.py:914`), so parent/child
|
||||
relationships and object state must survive the framework tree shape rather than
|
||||
only an in-memory PLR object graph.
|
||||
|
||||
Sirna resource/deck classes therefore must survive:
|
||||
|
||||
1. registry-time construction;
|
||||
2. `Resource.deserialize()` round trips;
|
||||
3. cloud-synced deck state with serialized children.
|
||||
|
||||
If a synced deck already has serialized `children`, default setup must not
|
||||
create duplicate/stale child resources. Sirna noticed this problem, but the
|
||||
reason is framework-level: cloud/resource-tree sync reconstructs PLR objects
|
||||
from serialized state, so constructors and setup logic must be idempotent.
|
||||
|
||||
Existing Sirna deck code already acknowledges the issue: `BIOYOND_Sirna_Deck`
|
||||
turns `setup=False` during deserialize when serialized `children` are present
|
||||
(`unilabos/resources/bioyond/decks.py:153`). Sirna material classes also use
|
||||
registry-visible `@resource(...)` decorators and tolerant constructors with
|
||||
`*args, **kwargs`, defaults, and `ordering` fallbacks
|
||||
(`unilabos/resources/bioyond/sirna_materials.py:14`). Treat those as required
|
||||
patterns for any new synced resource class.
|
||||
|
||||
Guidance:
|
||||
|
||||
- Do not add a deck/resource class until it round-trips through
|
||||
`Resource.serialize()` / `Resource.deserialize()` and
|
||||
`ResourceTreeSet.from_plr_resources(...).to_plr_resources()`.
|
||||
- Preserve `unilabos_uuid`, parentage, `unilabos_extra`, and liquid state across
|
||||
the round trip.
|
||||
- Make default setup conditional: if serialized children exist, do not recreate
|
||||
default warehouses or default child resources on top of them.
|
||||
- Itemized PLR subclasses must provide `ordered_items` or `ordering`; otherwise
|
||||
deserialization can fail or rebuild a different structure.
|
||||
|
||||
## Startup And Resync Recommendation
|
||||
|
||||
The current Sirna code installs `SirnaResourceSynchronizer` after
|
||||
`super().post_init(ros_node)` (`sirna_station.py:363`). That is useful as a
|
||||
phase patch and as evidence that classification hooks are needed, but it should
|
||||
not become the long-term lifecycle. Base initialization may already have run
|
||||
generic stock sync and base post-init may already have published the deck before
|
||||
the Sirna synchronizer is installed.
|
||||
|
||||
Recommended pathway:
|
||||
|
||||
1. Keep the `BioyondWorkstation` lifecycle as the base path.
|
||||
2. Add a synchronizer factory or hook registration point before eager sync, for
|
||||
example `create_resource_synchronizer()`.
|
||||
3. Let Sirna provide classification/resolution hooks through that shared
|
||||
synchronizer shape.
|
||||
4. Make startup sync use the installed hook-aware synchronizer before the first
|
||||
deck publication.
|
||||
5. Make manual resync, reset resync, report-triggered resync, and future
|
||||
periodic sync all call `self.resource_synchronizer.sync_from_external()`.
|
||||
6. Do not instantiate fresh base synchronizers inside Sirna actions, because
|
||||
that bypasses the installed project logic.
|
||||
|
||||
This directly addresses the overlap finding in
|
||||
`temp_benyao/sirna/_findings/2026-05-12_sirna_synchronizer_overlap.md:6`.
|
||||
|
||||
## Material Registration From Create-Order Results
|
||||
|
||||
Create-order allocation registration should remain separate from stock sync, but
|
||||
it should use the same classification and apply logic.
|
||||
|
||||
Recommended create-order pipeline:
|
||||
|
||||
1. Normalize allocation records into:
|
||||
|
||||
```python
|
||||
{
|
||||
"materialId": "...",
|
||||
"materialCode": "...",
|
||||
"materialName": "...",
|
||||
"materialTypeId": "...",
|
||||
"materialTypeCode": "...",
|
||||
"materialTypeMode": "Sample|Consumables|Reagent",
|
||||
"materialTypeName": "...",
|
||||
"locationId": "...",
|
||||
"locationCode": "...",
|
||||
"locationShowName": "...",
|
||||
}
|
||||
```
|
||||
|
||||
2. Resolve warehouse and slot by:
|
||||
|
||||
```text
|
||||
material-info(materialId)
|
||||
-> warehouse-info-by-mat-type-id(materialTypeId) matched by locationId
|
||||
-> code-only diagnostic fallback only if unambiguous
|
||||
```
|
||||
|
||||
3. Classify as `slot_labware`, `liquid_content`, or `unsupported`.
|
||||
4. Apply mutation to the PLR deck.
|
||||
5. Publish the full deck once after the batch.
|
||||
|
||||
The current Sirna `_register_materials_to_tree()` already documents this flow
|
||||
(`sirna_station.py:3659`) and should be the local reference implementation until
|
||||
the shared hook is designed.
|
||||
|
||||
## Cloud / UniLabOS Publication Rules
|
||||
|
||||
Always mutate real tracked PLR resources first. Then publish through the
|
||||
framework.
|
||||
|
||||
Correct call shape:
|
||||
|
||||
```python
|
||||
ROS2DeviceNode.run_async_func(
|
||||
self._ros_node.update_resource,
|
||||
True,
|
||||
**{"resources": [self.deck]},
|
||||
)
|
||||
```
|
||||
|
||||
The real method is:
|
||||
|
||||
```python
|
||||
async def update_resource(self, resources: List["ResourcePLR"])
|
||||
```
|
||||
|
||||
See `unilabos/ros/nodes/base_device_node.py:727`.
|
||||
|
||||
Do not call:
|
||||
|
||||
```python
|
||||
update_resource(resource_name=..., resource_data=...)
|
||||
```
|
||||
|
||||
Do not manually serialize the deck for this path. `update_resource()` creates a
|
||||
`ResourceTreeSet`, sends it to `/c2s_update_resource_tree`, and applies returned
|
||||
UUID mappings. Missing root parent UUIDs are auto-mounted to the current device,
|
||||
so parentage should be preserved on PLR objects before publication.
|
||||
|
||||
## Metadata Contract
|
||||
|
||||
Every Bioyond-originated slot resource should carry enough metadata for unload,
|
||||
audit, and later sync:
|
||||
|
||||
```python
|
||||
plr_resource.unilabos_extra = {
|
||||
"material_bioyond_id": mat["materialId"],
|
||||
"material_bioyond_code": mat["materialCode"],
|
||||
"material_bioyond_name": mat["materialName"],
|
||||
"material_bioyond_type_id": mat["materialTypeId"],
|
||||
"material_bioyond_type_code": mat["materialTypeCode"],
|
||||
"material_bioyond_type_mode": mat["materialTypeMode"],
|
||||
"location_bioyond_id": mat["locationId"],
|
||||
"location_code": resolved["location_code"],
|
||||
"warehouse_bioyond_id": resolved["warehouse_id"],
|
||||
"warehouse_bioyond_name": resolved["warehouse_name"],
|
||||
"location_resolution_source": resolved["source"],
|
||||
}
|
||||
```
|
||||
|
||||
Every Bioyond-originated liquid content should preserve equivalent metadata on
|
||||
the parent labware:
|
||||
|
||||
```python
|
||||
parent.unilabos_extra.setdefault("reagent_bioyond_ids", []).append({
|
||||
"material_bioyond_id": mat["materialId"],
|
||||
"material_bioyond_code": mat["materialCode"],
|
||||
"material_bioyond_name": mat["materialName"],
|
||||
"material_bioyond_type_id": mat["materialTypeId"],
|
||||
"material_bioyond_type_code": mat["materialTypeCode"],
|
||||
"location_bioyond_id": mat["locationId"],
|
||||
"quantity": mat.get("quantity"),
|
||||
"location_resolution_source": resolved["source"],
|
||||
})
|
||||
```
|
||||
|
||||
This metadata is not decorative. It is required for correct unload, audit,
|
||||
duplicate prevention, and future round-trip sync.
|
||||
|
||||
## Stale State And Conflict Policy
|
||||
|
||||
This is confirmed current behavior, not just a theoretical risk.
|
||||
|
||||
Current stock import places resources into empty warehouse slots and skips
|
||||
occupied slots. That prevents overwrites, but it can leave stale local resources
|
||||
after external moves/deletes.
|
||||
|
||||
Evidence:
|
||||
|
||||
- `BioyondResourceSynchronizer.sync_from_external()` fetches Bioyond stock and
|
||||
delegates to `resource_bioyond_to_plr(...)`, but it does not compute a
|
||||
before/after diff or remove local resources absent from the snapshot
|
||||
(`unilabos/devices/workstation/bioyond_studio/station.py:147`).
|
||||
- `resource_bioyond_to_plr(...)` only assigns when the target warehouse position
|
||||
is empty or a placeholder; when a real resource already occupies the slot, it
|
||||
logs "跳过放置" and leaves the existing object in place
|
||||
(`unilabos/resources/graphio.py:936`).
|
||||
- Bioyond outbound/removal logic exists in separate local-to-external hooks such
|
||||
as `resource_tree_remove(...)`, but that is not invoked by stock refresh for
|
||||
Bioyond rows that disappeared externally
|
||||
(`unilabos/devices/workstation/bioyond_studio/station.py:987`).
|
||||
|
||||
Recommended direction:
|
||||
|
||||
1. Define Bioyond as the source of truth for external stock snapshots unless a
|
||||
local operation is in progress.
|
||||
2. Before applying a stock snapshot, compute a diff by Bioyond material ID.
|
||||
3. Remove or mark local resources whose Bioyond IDs disappeared from the
|
||||
snapshot, subject to workflow safety checks.
|
||||
4. Move local resources whose Bioyond location ID changed.
|
||||
5. Attach/detach liquid contents idempotently by Bioyond material ID.
|
||||
6. Publish once after applying the batch.
|
||||
7. In ambiguous or active-operation cases, log and require manual confirmation.
|
||||
|
||||
Until this policy exists, call the current implementation "refresh/import" rather
|
||||
than "authoritative synchronization."
|
||||
|
||||
## External-To-Local And Local-To-External Boundaries
|
||||
|
||||
External-to-local:
|
||||
|
||||
- Bioyond stock and create-order allocation rows mutate the local PLR deck.
|
||||
- Then UniLabOS publication derives resource trees from the PLR deck.
|
||||
|
||||
Local-to-external:
|
||||
|
||||
- `resource_tree_add` / update / remove may call Bioyond add, inbound, outbound,
|
||||
or move APIs.
|
||||
- These paths should require Bioyond IDs or explicit creation parameters.
|
||||
- Movement should use `unilabos_extra["update_resource_site"]` only as an
|
||||
explicit request, not as hidden ambient state.
|
||||
- After successful Bioyond side effects, refresh or update the PLR deck and
|
||||
publish the deck.
|
||||
|
||||
Avoid station-level direct LIMS calls that bypass the synchronizer unless the
|
||||
action explicitly reconciles the deck afterward.
|
||||
|
||||
## Error Handling Rules
|
||||
|
||||
Fail loudly on:
|
||||
|
||||
- unknown material type code/name;
|
||||
- unresolved warehouse ID/name;
|
||||
- location ID not found in `warehouse-info-by-mat-type-id`;
|
||||
- code-only location ambiguity;
|
||||
- missing parent labware for liquid content;
|
||||
- invalid PLR resource class or `Resource.deserialize()` failure;
|
||||
- Bioyond RPC returning empty/fallback values where an ID is required.
|
||||
|
||||
Do not silently create `RegularContainer` to hide mapping failures. The Sirna
|
||||
finding at `temp_benyao/sirna/_findings/2026-05-07_reagents_vs_resources.md:52`
|
||||
calls this out as a reusable trap.
|
||||
|
||||
## Tests And Validation
|
||||
|
||||
Minimum offline tests:
|
||||
|
||||
1. `update_resource` is called only with `resources=[deck]`.
|
||||
2. `ResourceTreeSet.from_plr_resources([deck])` preserves UUIDs, parentage,
|
||||
`data`, and `unilabos_extra`.
|
||||
3. Sirna allocation records resolve by `material-info` first.
|
||||
4. `warehouse-info-by-mat-type-id` resolves by `locationId`.
|
||||
5. Code-only fallback raises on ambiguous slots.
|
||||
6. `Sample` and `Consumables` rows become slot labware.
|
||||
7. Reagent content rows become parent liquid metadata.
|
||||
8. Re-running registration does not duplicate liquid entries.
|
||||
9. Missing parent labware is deferred/logged, not guessed.
|
||||
10. Unknown material type emits Bioyond IDs.
|
||||
11. Deck deserialize does not recreate duplicate default children.
|
||||
12. Warehouse coordinate mapping is tested per warehouse, not globally.
|
||||
13. A synced Sirna deck round-trips through PLR deserialize and
|
||||
`ResourceTreeSet` conversion without duplicate default children.
|
||||
14. Stock refresh with a missing Bioyond material ID proves current add/skip
|
||||
behavior first, then verifies the chosen diff/delete policy once implemented.
|
||||
15. Display geometry tests cover project-local live discovery fixtures,
|
||||
`bioyond_axis`, `bioyond_key_axis`, representative `code/x/y` mappings,
|
||||
frontend y-flip, and no-overlap deck layout.
|
||||
|
||||
Focused Sirna command:
|
||||
|
||||
```bash
|
||||
pytest temp_benyao/sirna/tests/test_sirna_resource_system.py -q
|
||||
```
|
||||
|
||||
Shared conversion command, when changing graphio or Bioyond converters:
|
||||
|
||||
```bash
|
||||
pytest tests/resources/test_converter_bioyond.py -q
|
||||
```
|
||||
|
||||
Live/read-only validation should capture fixtures for:
|
||||
|
||||
- `stock_material(typeMode=0/1/2, includeDetail=true)`;
|
||||
- `material-info(materialId)`;
|
||||
- `warehouse-info-by-mat-type-id(materialTypeId)`;
|
||||
- create-order allocation records;
|
||||
- frontend/cloud resource-tree readback after publication.
|
||||
|
||||
## Discrepancies To Discuss
|
||||
|
||||
### 1. Architecture Is Direction; Base Code Is The Compatibility Anchor
|
||||
|
||||
The architecture guide presents `ResourceSynchronizer` as bidirectional. Current
|
||||
Bioyond code is mostly eager external import plus selected add/remove/update
|
||||
side effects. It has no complete continuous conflict-resolution loop.
|
||||
|
||||
Sirna current code should be read in this context: it exposes missing
|
||||
capabilities, but parts of it conflict with the existing base lifecycle because
|
||||
it was layered on after the base sync behavior already existed.
|
||||
|
||||
Recommendation: keep the bidirectional architecture as the target, preserve
|
||||
`BioyondWorkstation` as the implementation anchor, and introduce shared hooks
|
||||
for the missing Sirna-class problems. Describe the current implementation as
|
||||
best-effort refresh plus Bioyond side effects until a diff/conflict policy
|
||||
exists.
|
||||
|
||||
### 2. The Doc Centers `Deck`; The Framework Centers `ResourceTreeSet`
|
||||
|
||||
The architecture guide uses PLR `Deck` as the material system. UniLabOS resource
|
||||
tracking uses `ResourceTreeSet` as the canonical serialized representation.
|
||||
|
||||
Recommendation: phrase the model as "Deck is the local PLR mutation surface;
|
||||
ResourceTreeSet is the UniLabOS/cloud representation derived from it."
|
||||
|
||||
### 3. Base Bioyond Sync Treats Every Stock Row As PLR Resource
|
||||
|
||||
`BioyondResourceSynchronizer.sync_from_external()` currently feeds typeMode
|
||||
0/1/2 rows into `resource_bioyond_to_plr(...)`.
|
||||
|
||||
Sirna evidence shows this is wrong for reagent/content-like rows.
|
||||
|
||||
Recommendation: add classification hooks before conversion. Rows classified as
|
||||
liquid content must not go through standalone PLR resource conversion.
|
||||
|
||||
### 4. Sirna Fix Exists As A Fork, Not A Shared Hook
|
||||
|
||||
Current `SirnaResourceSynchronizer` captures the important reagent-as-liquid
|
||||
question, but it duplicates or bypasses shared sync mechanics. Startup can run
|
||||
base sync before the Sirna synchronizer is installed, and manual/reset paths
|
||||
have used fresh base synchronizers.
|
||||
|
||||
Recommendation: keep the discovered behavior where evidence supports it, but
|
||||
refactor the shape. A factory/hook in the shared synchronizer is preferable to a
|
||||
long-lived parallel sync class.
|
||||
|
||||
### 5. Sirna Create-Order Registration Is Stronger Than Stock Sync
|
||||
|
||||
Create-order registration now has ID-first resolution and a clearer classifier.
|
||||
That is valuable evidence, not automatically the canonical sync design. The
|
||||
stock sync path still resolves external liquid rows by warehouse name/code and
|
||||
stores weaker metadata.
|
||||
|
||||
Recommendation: extract the stronger resolver/classifier ideas into shared
|
||||
hooks, then converge stock sync and create-order registration on the same
|
||||
functions.
|
||||
|
||||
### 6. Graphio Has Shared Fragility
|
||||
|
||||
`resource_bioyond_to_plr()` contains hardcoded warehouse/coordinate cases and a
|
||||
fallback to `RegularContainer`. Hardening it affects multiple Bioyond projects.
|
||||
|
||||
Recommendation: after Sirna is green, discuss shared graphio hardening in a
|
||||
separate change: no silent `RegularContainer`, explicit unknown-type diagnostics,
|
||||
and project-specific axis metadata instead of hardcoded names.
|
||||
|
||||
### 7. Serialize/Deserialize Is A Gating Contract
|
||||
|
||||
This is not optional documentation neatness. Any new resource/deck class or sync
|
||||
metadata must pass the framework serialize/deserialize path before it can be
|
||||
trusted in cloud-synced operation.
|
||||
|
||||
Recommendation: make round-trip tests part of acceptance for resource-system
|
||||
changes, especially for Sirna deck setup, warehouse metadata, `reagent_bioyond_ids`,
|
||||
liquid tracker state, and itemized labware ordering.
|
||||
|
||||
### 8. Existing Stock Sync Is Add/Skip-Biased, Not Delete-Aware
|
||||
|
||||
Current `sync_from_external()` imports and places observed Bioyond resources,
|
||||
but it does not delete local resources missing from the latest stock snapshot.
|
||||
When a target slot is occupied by a real resource, graphio skips placement rather
|
||||
than replacing it.
|
||||
|
||||
Recommendation: describe the current behavior as "stock refresh/import" until a
|
||||
Bioyond-ID diff policy is implemented. Deletion/removal must be a deliberate
|
||||
phase, with workflow-safety checks and tests, not implied by the current stock
|
||||
sync name.
|
||||
|
||||
### 9. Peptide Display Is Useful; Peptide Sync Is Not Yet Authority
|
||||
|
||||
Peptide's latest display work is useful evidence for Peptide's own warehouse
|
||||
axis/key-axis metadata and for the shared need to account for frontend y-axis
|
||||
inversion. It does not define Sirna's axis values. Its resource sync remains
|
||||
untested/problematic and should not be treated as the model for Sirna sync
|
||||
behavior.
|
||||
|
||||
Recommendation: fold the Peptide display lesson into shared guidance as a
|
||||
discovery-and-test pattern, not as a literal axis pair. Keep Sirna display
|
||||
behavior grounded in Sirna live evidence and the current good deck baseline; keep
|
||||
resource synchronization recommendations grounded in the Sirna ID-first
|
||||
registration path and the shared Bioyond synchronizer refactor.
|
||||
|
||||
### 10. Some Existing Stations Should Be Examples Only, Not Templates
|
||||
|
||||
Non-Sirna stations show useful patterns, but also shortcuts:
|
||||
|
||||
- direct LIMS calls bypassing the synchronizer;
|
||||
- duplicate `super().__init__()` in reaction station;
|
||||
- stale/undefined `WAREHOUSE_MAPPING` references;
|
||||
- RPC methods collapsing failures into empty values;
|
||||
- no robust stale deck cleanup on stock refresh.
|
||||
|
||||
Recommendation: borrow the shared deck publication and Bioyond ID metadata
|
||||
patterns, not the incidental shortcuts.
|
||||
|
||||
## Recommended Discussion Path
|
||||
|
||||
For the next implementation discussion, decide these in order:
|
||||
|
||||
1. What is the smallest shared-base extension that lets project hooks exist
|
||||
before eager sync without breaking existing Bioyond stations?
|
||||
2. Should `BioyondWorkstation` gain a synchronizer factory, a hook registry, or
|
||||
a delayed eager-sync point?
|
||||
3. Is `materialTypeCode 0003` in current Sirna live data physical labware,
|
||||
liquid content, or both depending on row shape?
|
||||
4. Where should Sirna warehouse Bioyond IDs live: station config, deck metadata,
|
||||
or both?
|
||||
5. Should stock refresh clear/diff deck state now, or remain append/skip until
|
||||
after create-order registration is stable?
|
||||
6. Should `update_resource` remain async/non-blocking for material registration,
|
||||
or should selected user-facing actions fail if publication fails?
|
||||
7. Which parts of the Sirna reagent-as-liquid rule are project-local, and which
|
||||
should become shared Bioyond behavior after Peptide/cell validation?
|
||||
8. Should graphio fallback hardening land before or after Sirna stock sync is
|
||||
fully validated?
|
||||
9. Should any remaining Sirna x/y or y-reverse issue be fixed in shared
|
||||
graphio/display mapping after a live fixture proves it, or should the current
|
||||
Sirna deck remain untouched?
|
||||
|
||||
## Recommended Pathway
|
||||
|
||||
The pragmatic path is:
|
||||
|
||||
1. Preserve and test the current `BioyondWorkstation` lifecycle as the shared
|
||||
compatibility baseline.
|
||||
2. Treat Sirna create-order registration as a local proof of the missing
|
||||
classification/ID-resolution behavior, not as the architecture shape to copy.
|
||||
3. Validate live/read-only Sirna fixtures for `0003`, warehouse IDs, and stock
|
||||
reagent rows.
|
||||
4. Refactor the shared Bioyond synchronizer to expose classification,
|
||||
resolution, and non-slot row hooks with default behavior matching existing
|
||||
stations.
|
||||
5. Make Sirna install hooks before the first external sync and first deck
|
||||
publication through the shared lifecycle.
|
||||
6. Route startup, manual resync, reset resync, and report-triggered resync
|
||||
through the installed synchronizer.
|
||||
7. Converge stock sync and create-order registration on one
|
||||
resolver/classifier/apply implementation.
|
||||
8. Add stale-state diffing only after the basic ID-first path is stable.
|
||||
9. Harden graphio fallback as a shared follow-up.
|
||||
|
||||
This gives Sirna the necessary behavior without locking in a second Bioyond sync
|
||||
system that future projects will have to debug around.
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: ros-humble-unilabos-msgs
|
||||
version: 0.11.3
|
||||
version: 0.11.1
|
||||
source:
|
||||
path: ../../unilabos_msgs
|
||||
target_directory: src
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
package:
|
||||
name: unilabos
|
||||
version: "0.11.3"
|
||||
version: "0.11.1"
|
||||
|
||||
source:
|
||||
path: ../..
|
||||
|
||||
2
setup.py
2
setup.py
@@ -4,7 +4,7 @@ package_name = 'unilabos'
|
||||
|
||||
setup(
|
||||
name=package_name,
|
||||
version='0.11.3',
|
||||
version='0.11.1',
|
||||
packages=find_packages(),
|
||||
include_package_data=True,
|
||||
install_requires=['setuptools'],
|
||||
|
||||
@@ -1 +1 @@
|
||||
__version__ = "0.11.3"
|
||||
__version__ = "0.11.1"
|
||||
|
||||
@@ -59,7 +59,6 @@ class JobAddReq(BaseModel):
|
||||
task_id: str = Field(examples=["task_id"], description="task uuid (auto-generated if empty)", default="")
|
||||
job_id: str = Field(examples=["job_id"], description="goal uuid (auto-generated if empty)", default="")
|
||||
node_id: str = Field(examples=["node_id"], description="node uuid", default="")
|
||||
notebook_id: str = Field(examples=["notebook_id"], description="notebook uuid", default="")
|
||||
server_info: dict = Field(
|
||||
examples=[{"send_timestamp": 1717000000.0}],
|
||||
description="server info (auto-generated if empty)",
|
||||
|
||||
@@ -10,170 +10,29 @@ import shutil
|
||||
import sys
|
||||
|
||||
|
||||
_PATCH_MARKER = "# UniLabOS DLL Patch"
|
||||
_PATCH_END_MARKER = "# End UniLabOS DLL Patch"
|
||||
|
||||
# 75 = EX_TEMPFAIL: 临时失败、重试即可,避免与业务退出码冲突
|
||||
_RESTART_EXIT_CODE = 75
|
||||
|
||||
|
||||
def _build_dll_patch(lib_bin: str, preload_pyd: str = "") -> str:
|
||||
"""生成一段加在目标文件顶部的 DLL 加载补丁源码。
|
||||
|
||||
- 始终把 ``lib_bin`` 加入 DLL 搜索路径,并把 handle 挂在模块属性上,
|
||||
防止 GC 清掉搜索路径(``os.add_dll_directory`` 的句柄被回收时
|
||||
目录会被移除)。
|
||||
- 可选地用 ``ctypes.CDLL`` 预加载一个 .pyd,把它的依赖 DLL 提前装入
|
||||
进程内存,作为 ``rclpy._rclpy_pybind11`` 这类首次加载点的兜底。
|
||||
"""
|
||||
# 用 repr() 序列化路径:Python 解析 repr 的结果会还原成原始字符串,
|
||||
# 不需要也不能再叠加 raw-string 前缀(叠了反而会让 \\ 变成两个反斜杠)。
|
||||
lines = [
|
||||
_PATCH_MARKER,
|
||||
"import os as _ulab_os",
|
||||
f"_ulab_p = {lib_bin!r}",
|
||||
'if hasattr(_ulab_os, "add_dll_directory") and _ulab_os.path.isdir(_ulab_p):',
|
||||
" try: _UNILAB_DLL_HANDLE = _ulab_os.add_dll_directory(_ulab_p)",
|
||||
" except Exception: _UNILAB_DLL_HANDLE = None",
|
||||
]
|
||||
if preload_pyd:
|
||||
lines.extend(
|
||||
[
|
||||
"import ctypes as _ulab_ctypes",
|
||||
f"try: _ulab_ctypes.CDLL({preload_pyd!r})",
|
||||
"except Exception: pass",
|
||||
]
|
||||
)
|
||||
lines.append(_PATCH_END_MARKER)
|
||||
return "\n".join(lines) + "\n"
|
||||
|
||||
|
||||
def _apply_dll_patch(file_path: str, lib_bin: str, preload_pyd: str = "") -> bool:
|
||||
"""把 DLL 补丁前置到 ``file_path``。文件不存在或已打过补丁则返回 False。"""
|
||||
if not os.path.isfile(file_path):
|
||||
return False
|
||||
with open(file_path, "r", encoding="utf-8") as f:
|
||||
content = f.read()
|
||||
if _PATCH_MARKER in content:
|
||||
return False
|
||||
shutil.copy2(file_path, file_path + ".bak")
|
||||
with open(file_path, "w", encoding="utf-8") as f:
|
||||
f.write(_build_dll_patch(lib_bin, preload_pyd) + content)
|
||||
return True
|
||||
|
||||
|
||||
def _print_restart_banner(patched_files):
|
||||
"""打印重启提示并以 EX_TEMPFAIL 退出。
|
||||
|
||||
- 不使用 ANSI 颜色码:Windows 旧版 cmd / PowerShell 5 默认不开 VT 处理,
|
||||
会把 ``\\033[1;33m`` 当做字面字符显示,反而让用户看不到正文。
|
||||
- 同时写入 stderr 与 stdout:某些上层 launcher / supervisor 只重定向
|
||||
其中一路,写两遍能保证用户至少看到一份。
|
||||
- 写入前防御性把流切到 UTF-8 with replace:``main.py`` 里已经做过一次,
|
||||
但本模块也可能被绕过 ``main.py`` 的代码路径直接 import;reconfigure
|
||||
失败也只是退回 errors=replace,不影响整体流程。
|
||||
"""
|
||||
if sys.platform == "win32":
|
||||
for _stream in (sys.stdout, sys.stderr):
|
||||
try:
|
||||
_stream.reconfigure(encoding="utf-8", errors="replace") # type: ignore[attr-defined]
|
||||
except (AttributeError, OSError):
|
||||
pass
|
||||
|
||||
bar = "#" * 78
|
||||
files_lines = [f"[UniLabOS] - {p}" for p in patched_files]
|
||||
body = "\n".join(
|
||||
[
|
||||
"",
|
||||
bar,
|
||||
bar,
|
||||
"##",
|
||||
"## [UniLabOS] Windows + conda 下检测到 DLL 加载失败,已自动打补丁。",
|
||||
"## [UniLabOS] DLL load failure detected on Windows + conda;",
|
||||
"## [UniLabOS] the following files have been auto-patched:",
|
||||
"##",
|
||||
*[f"## {line}" for line in files_lines],
|
||||
"##",
|
||||
"## [UniLabOS] 当前进程的 rclpy 状态已损坏,补丁需要在新进程才生效。",
|
||||
"## [UniLabOS] The current process is unusable; the patch only takes",
|
||||
"## [UniLabOS] effect on a fresh process.",
|
||||
"##",
|
||||
"## >>> 请重新运行刚才的命令 / Please re-run the same command. <<<",
|
||||
"##",
|
||||
bar,
|
||||
bar,
|
||||
"",
|
||||
]
|
||||
)
|
||||
|
||||
for stream in (sys.stderr, sys.stdout):
|
||||
try:
|
||||
stream.write(body)
|
||||
stream.flush()
|
||||
except Exception:
|
||||
try:
|
||||
print(body, file=stream)
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
sys.exit(_RESTART_EXIT_CODE)
|
||||
|
||||
|
||||
def patch_rclpy_dll_windows():
|
||||
"""在 Windows + conda 环境下修复 rclpy / rosidl typesupport 的 DLL 加载。
|
||||
|
||||
背景:conda 安装的 ros 系列包,其原生扩展依赖 ``$CONDA_PREFIX/Library/bin``
|
||||
下的 DLL;只有 conda 环境被正确激活、且 PATH 中含 ``Library/bin`` 时,
|
||||
``os.add_dll_directory`` 才能找到它们。当从快捷方式 / IDE / 子进程 /
|
||||
没激活的 shell 启动 ``unilab`` 时,会出现 ``DLL load failed``。
|
||||
|
||||
本函数会:
|
||||
1) 修补 ``rclpy/impl/implementation_singleton.py`` —— rclpy 自身的 C 扩展入口;
|
||||
2) 修补 ``rpyutils/add_dll_directories.py`` —— 所有 ``*_s__rosidl_typesupport_c.pyd``
|
||||
(``geometry_msgs`` / ``std_msgs`` / ``sensor_msgs`` 等)的统一加载入口。
|
||||
|
||||
打完补丁后**必须重启进程**才能生效(当前进程的 rclpy 已经发生过
|
||||
``ImportError``,子模块仍处于损坏状态)。因此函数会主动退出,并在
|
||||
stdout/stderr 同时打印明显的重启提示,避免用户被后续报错淹没。
|
||||
"""
|
||||
"""在 Windows + conda 环境下为 rclpy 打 DLL 加载补丁"""
|
||||
if sys.platform != "win32" or not os.environ.get("CONDA_PREFIX"):
|
||||
return
|
||||
|
||||
try:
|
||||
import rclpy # noqa: F401
|
||||
import rclpy
|
||||
|
||||
return
|
||||
except ImportError as e:
|
||||
if not str(e).startswith("DLL load failed"):
|
||||
return
|
||||
|
||||
cp = os.environ["CONDA_PREFIX"]
|
||||
lib_bin = os.path.join(cp, "Library", "bin")
|
||||
site_packages = os.path.join(cp, "Lib", "site-packages")
|
||||
if not os.path.isdir(lib_bin):
|
||||
impl = os.path.join(cp, "Lib", "site-packages", "rclpy", "impl", "implementation_singleton.py")
|
||||
pyd = glob.glob(os.path.join(cp, "Lib", "site-packages", "rclpy", "_rclpy_pybind11*.pyd"))
|
||||
if not os.path.exists(impl) or not pyd:
|
||||
return
|
||||
|
||||
patched = []
|
||||
|
||||
# 1) rclpy 自身的入口
|
||||
rclpy_impl = os.path.join(site_packages, "rclpy", "impl", "implementation_singleton.py")
|
||||
rclpy_pyd_matches = glob.glob(os.path.join(site_packages, "rclpy", "_rclpy_pybind11*.pyd"))
|
||||
rclpy_pyd = rclpy_pyd_matches[0] if rclpy_pyd_matches else ""
|
||||
if rclpy_pyd and _apply_dll_patch(rclpy_impl, lib_bin, preload_pyd=rclpy_pyd):
|
||||
patched.append(rclpy_impl)
|
||||
|
||||
# 2) rpyutils —— 所有 rosidl typesupport pyd 的加载点;放在 rclpy 之后
|
||||
# 例:geometry_msgs/geometry_msgs_s__rosidl_typesupport_c.pyd
|
||||
rpyutils_dll = os.path.join(site_packages, "rpyutils", "add_dll_directories.py")
|
||||
if _apply_dll_patch(rpyutils_dll, lib_bin):
|
||||
patched.append(rpyutils_dll)
|
||||
|
||||
if not patched:
|
||||
# 已经打过补丁但 rclpy 仍然加载失败:原因不是缺 DLL 搜索路径,
|
||||
# 不要再次打补丁污染文件,让上层看到真实的 ImportError。
|
||||
return
|
||||
|
||||
_print_restart_banner(patched)
|
||||
with open(impl, "r", encoding="utf-8") as f:
|
||||
content = f.read()
|
||||
lib_bin = os.path.join(cp, "Library", "bin").replace("\\", "/")
|
||||
patch = f'# UniLabOS DLL Patch\nimport os,ctypes\nos.add_dll_directory("{lib_bin}") if hasattr(os,"add_dll_directory") else None\ntry: ctypes.CDLL("{pyd[0].replace(chr(92),"/")}")\nexcept: pass\n# End Patch\n'
|
||||
shutil.copy2(impl, impl + ".bak")
|
||||
with open(impl, "w", encoding="utf-8") as f:
|
||||
f.write(patch + content)
|
||||
|
||||
|
||||
patch_rclpy_dll_windows()
|
||||
|
||||
@@ -320,7 +320,6 @@ def job_add(req: JobAddReq) -> JobData:
|
||||
action_name=action_name,
|
||||
task_id=task_id,
|
||||
job_id=job_id,
|
||||
notebook_id=req.notebook_id,
|
||||
device_action_key=device_action_key,
|
||||
)
|
||||
|
||||
|
||||
@@ -59,7 +59,6 @@ class QueueItem:
|
||||
action_name: str
|
||||
task_id: str
|
||||
job_id: str
|
||||
notebook_id: str
|
||||
device_action_key: str
|
||||
next_run_time: float = 0 # 下次执行时间戳
|
||||
retry_count: int = 0 # 重试次数
|
||||
@@ -72,7 +71,6 @@ class JobInfo:
|
||||
job_id: str
|
||||
task_id: str
|
||||
device_id: str
|
||||
notebook_id: str
|
||||
action_name: str
|
||||
device_action_key: str
|
||||
status: JobStatus
|
||||
@@ -541,10 +539,7 @@ class MessageProcessor:
|
||||
self.reconnect_count += 1
|
||||
backoff = WSConfig.reconnect_interval
|
||||
logger.info(
|
||||
"[MessageProcessor] 即将在 %s 秒后重连 (已尝试 %s/%s)",
|
||||
backoff,
|
||||
self.reconnect_count,
|
||||
WSConfig.max_reconnect_attempts,
|
||||
f"[MessageProcessor] 即将在 {backoff} 秒后重连 (已尝试 {self.reconnect_count}/{WSConfig.max_reconnect_attempts})"
|
||||
)
|
||||
await asyncio.sleep(backoff)
|
||||
else:
|
||||
@@ -708,7 +703,6 @@ class MessageProcessor:
|
||||
action_name = data.get("action_name", "")
|
||||
task_id = data.get("task_id", "")
|
||||
job_id = data.get("job_id", "")
|
||||
notebook_id = data.get("notebook_id", "")
|
||||
|
||||
if not all([device_id, action_name, task_id, job_id]):
|
||||
logger.error("[MessageProcessor] Missing required fields in query_action_state")
|
||||
@@ -724,7 +718,6 @@ class MessageProcessor:
|
||||
job_id=job_id,
|
||||
task_id=task_id,
|
||||
device_id=device_id,
|
||||
notebook_id=notebook_id,
|
||||
action_name=action_name,
|
||||
device_action_key=device_action_key,
|
||||
status=JobStatus.QUEUE,
|
||||
@@ -739,27 +732,13 @@ class MessageProcessor:
|
||||
if can_start_immediately:
|
||||
# 可以立即开始
|
||||
await self._send_action_state_response(
|
||||
device_id,
|
||||
action_name,
|
||||
task_id,
|
||||
job_id,
|
||||
"query_action_status",
|
||||
True,
|
||||
0,
|
||||
notebook_id=notebook_id,
|
||||
device_id, action_name, task_id, job_id, "query_action_status", True, 0
|
||||
)
|
||||
logger.trace(f"[MessageProcessor] Job {job_log} can start immediately")
|
||||
else:
|
||||
# 需要排队
|
||||
await self._send_action_state_response(
|
||||
device_id,
|
||||
action_name,
|
||||
task_id,
|
||||
job_id,
|
||||
"query_action_status",
|
||||
False,
|
||||
10,
|
||||
notebook_id=notebook_id,
|
||||
device_id, action_name, task_id, job_id, "query_action_status", False, 10
|
||||
)
|
||||
logger.trace(f"[MessageProcessor] Job {job_log} queued")
|
||||
|
||||
@@ -789,7 +768,6 @@ class MessageProcessor:
|
||||
job_id=req.job_id,
|
||||
task_id=req.task_id,
|
||||
device_id=req.device_id,
|
||||
notebook_id=req.notebook_id,
|
||||
action_name=action_name,
|
||||
device_action_key=device_action_key,
|
||||
status=JobStatus.QUEUE,
|
||||
@@ -797,16 +775,11 @@ class MessageProcessor:
|
||||
always_free=True,
|
||||
)
|
||||
self.device_manager.add_queue_request(job_info)
|
||||
existing_job = job_info
|
||||
logger.info(f"[MessageProcessor] Job {job_log} always_free, auto-registered from direct job_start")
|
||||
else:
|
||||
logger.error(f"[MessageProcessor] Job {job_log} not registered (missing query_action_state)")
|
||||
return
|
||||
|
||||
if existing_job and req.notebook_id and not existing_job.notebook_id:
|
||||
existing_job.notebook_id = req.notebook_id
|
||||
notebook_id = req.notebook_id or (existing_job.notebook_id if existing_job else "")
|
||||
|
||||
success = self.device_manager.start_job(req.job_id)
|
||||
if not success:
|
||||
logger.error(f"[MessageProcessor] Failed to start job {job_log}")
|
||||
@@ -822,7 +795,6 @@ class MessageProcessor:
|
||||
action_name=req.action,
|
||||
task_id=req.task_id,
|
||||
job_id=req.job_id,
|
||||
notebook_id=notebook_id,
|
||||
device_action_key=device_action_key,
|
||||
)
|
||||
|
||||
@@ -862,7 +834,6 @@ class MessageProcessor:
|
||||
"job_id": req.job_id,
|
||||
"task_id": req.task_id,
|
||||
"device_id": req.device_id,
|
||||
"notebook_id": queue_item.notebook_id,
|
||||
"action_name": req.action,
|
||||
"status": "failed",
|
||||
"feedback_data": {},
|
||||
@@ -884,7 +855,6 @@ class MessageProcessor:
|
||||
"query_action_status",
|
||||
True,
|
||||
0,
|
||||
notebook_id=next_job.notebook_id,
|
||||
)
|
||||
next_job_log = format_job_log(
|
||||
next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
|
||||
@@ -1034,16 +1004,11 @@ class MessageProcessor:
|
||||
|
||||
success = host_node.notify_resource_tree_update(dev_id, act, item_list)
|
||||
|
||||
if success is True:
|
||||
if success:
|
||||
logger.info(
|
||||
f"[MessageProcessor] Resource tree {act} completed for device {dev_id}, "
|
||||
f"items: {len(item_list)}"
|
||||
)
|
||||
elif success is None:
|
||||
logger.info(
|
||||
f"[MessageProcessor] Resource tree {act} skipped for device {dev_id}: "
|
||||
"在线增加设备暂不支持"
|
||||
)
|
||||
else:
|
||||
logger.warning(f"[MessageProcessor] Resource tree {act} failed for device {dev_id}")
|
||||
|
||||
@@ -1067,11 +1032,6 @@ class MessageProcessor:
|
||||
|
||||
for item in device_list:
|
||||
target_node_id = item.get("target_node_id", "host_node")
|
||||
if action == "add":
|
||||
logger.info(
|
||||
f"[DeviceManage] 在线增加设备暂不支持,跳过 add_device: {item.get('id', '')}"
|
||||
)
|
||||
continue
|
||||
|
||||
def _notify(target_id: str, act: str, cfg: ResourceDictType):
|
||||
try:
|
||||
@@ -1141,15 +1101,7 @@ class MessageProcessor:
|
||||
logger.info(f"[MessageProcessor] Restart cleanup scheduled")
|
||||
|
||||
async def _send_action_state_response(
|
||||
self,
|
||||
device_id: str,
|
||||
action_name: str,
|
||||
task_id: str,
|
||||
job_id: str,
|
||||
typ: str,
|
||||
free: bool,
|
||||
need_more: int,
|
||||
notebook_id: str = "",
|
||||
self, device_id: str, action_name: str, task_id: str, job_id: str, typ: str, free: bool, need_more: int
|
||||
):
|
||||
"""发送动作状态响应"""
|
||||
message = {
|
||||
@@ -1160,7 +1112,6 @@ class MessageProcessor:
|
||||
"action_name": action_name,
|
||||
"task_id": task_id,
|
||||
"job_id": job_id,
|
||||
"notebook_id": notebook_id,
|
||||
"free": free,
|
||||
"need_more": need_more + 1,
|
||||
},
|
||||
@@ -1243,7 +1194,6 @@ class QueueProcessor:
|
||||
action_name=timeout_job.action_name,
|
||||
task_id=timeout_job.task_id,
|
||||
job_id=timeout_job.job_id,
|
||||
notebook_id=timeout_job.notebook_id,
|
||||
device_action_key=timeout_job.device_action_key,
|
||||
)
|
||||
# 发布超时失败状态,这会触发正常的job完成流程
|
||||
@@ -1302,7 +1252,6 @@ class QueueProcessor:
|
||||
"action_name": job_info.action_name,
|
||||
"task_id": job_info.task_id,
|
||||
"job_id": job_info.job_id,
|
||||
"notebook_id": job_info.notebook_id,
|
||||
"free": False,
|
||||
"need_more": 10 + 1,
|
||||
},
|
||||
@@ -1342,7 +1291,6 @@ class QueueProcessor:
|
||||
"action_name": job_info.action_name,
|
||||
"task_id": job_info.task_id,
|
||||
"job_id": job_info.job_id,
|
||||
"notebook_id": job_info.notebook_id,
|
||||
"free": False,
|
||||
"need_more": 10 + 1,
|
||||
},
|
||||
@@ -1388,15 +1336,12 @@ class QueueProcessor:
|
||||
"action_name": next_job.action_name,
|
||||
"task_id": next_job.task_id,
|
||||
"job_id": next_job.job_id,
|
||||
"notebook_id": next_job.notebook_id,
|
||||
"free": True,
|
||||
"need_more": 0,
|
||||
},
|
||||
}
|
||||
self.message_processor.send_message(message)
|
||||
# next_job_log = format_job_log(
|
||||
# next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
|
||||
# )
|
||||
# next_job_log = format_job_log(next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name)
|
||||
# logger.debug(f"[QueueProcessor] Notified next job {next_job_log} can start")
|
||||
|
||||
# 立即触发下一轮状态检查
|
||||
@@ -1565,7 +1510,6 @@ class WebSocketClient(BaseCommunicationClient):
|
||||
"job_id": item.job_id,
|
||||
"task_id": item.task_id,
|
||||
"device_id": item.device_id,
|
||||
"notebook_id": item.notebook_id,
|
||||
"action_name": item.action_name,
|
||||
"status": status,
|
||||
"feedback_data": feedback_data,
|
||||
|
||||
459
unilabos/devices/workstation/bioyond_studio/debug_call_log.py
Normal file
459
unilabos/devices/workstation/bioyond_studio/debug_call_log.py
Normal file
@@ -0,0 +1,459 @@
|
||||
"""Per-action raw call/response log for Bioyond stations.
|
||||
|
||||
When a debug session is active, ``wrap_rpc_http`` replaces a ``BioyondV1RPC``
|
||||
instance's ``post`` / ``get`` methods with closures that perform the HTTP
|
||||
transport themselves, capture the request/response details, and append a record
|
||||
to the active session before returning exactly what ``BaseRequest`` would have
|
||||
returned. Outside of an active session the wrapped method delegates to the
|
||||
original (unwrapped) implementation, leaving non-debug behavior intact.
|
||||
|
||||
The session writes a Markdown file under ``out_dir`` mirroring the format of
|
||||
``temp_benyao/peptide/_logs/2026-04-30_160316_day3_samplefile_only_raw_calls.md``
|
||||
minus the "Raw Payload Argument" section.
|
||||
|
||||
This module has no dependency on ``BioyondV1RPC`` itself; the only contract is
|
||||
that the wrapped instance descends from ``BaseRequest`` (i.e. has a logger
|
||||
returned by ``self.get_logger()``).
|
||||
"""
|
||||
|
||||
from __future__ import annotations
|
||||
|
||||
import contextvars
|
||||
import copy
|
||||
import inspect
|
||||
import json
|
||||
import re
|
||||
from contextlib import contextmanager
|
||||
from dataclasses import dataclass, field
|
||||
from datetime import datetime
|
||||
from pathlib import Path
|
||||
from typing import Any, Iterator, List, Optional
|
||||
|
||||
import requests
|
||||
|
||||
__all__ = [
|
||||
"CallRecord",
|
||||
"CallLogContext",
|
||||
"session",
|
||||
"wrap_rpc_http",
|
||||
"active_session",
|
||||
]
|
||||
|
||||
|
||||
_DEFAULT_TIMEOUT_GET = 30
|
||||
_DEFAULT_TIMEOUT_POST = 120
|
||||
|
||||
|
||||
@dataclass
|
||||
class CallRecord:
|
||||
"""One captured HTTP call inside a debug session."""
|
||||
|
||||
index: int
|
||||
method: str
|
||||
url: str
|
||||
path: str
|
||||
source: str
|
||||
transport: str
|
||||
http_status: Optional[int]
|
||||
request_body: Any
|
||||
response_body: Any
|
||||
error: Optional[str] = None
|
||||
|
||||
|
||||
@dataclass
|
||||
class CallLogContext:
|
||||
"""State for a single ``session()`` block.
|
||||
|
||||
A session lazily creates its file on the first appended record. Actions
|
||||
that abort before any RPC produce no file.
|
||||
"""
|
||||
|
||||
action: str
|
||||
out_dir: Path
|
||||
started_at: datetime
|
||||
calls: List[CallRecord] = field(default_factory=list)
|
||||
file_path: Optional[Path] = None
|
||||
|
||||
def append(self, record: CallRecord) -> None:
|
||||
record.index = len(self.calls) + 1
|
||||
self.calls.append(record)
|
||||
self._write_file()
|
||||
|
||||
# -- file I/O -------------------------------------------------------------
|
||||
|
||||
def _resolve_file_path(self) -> Path:
|
||||
if self.file_path is not None:
|
||||
return self.file_path
|
||||
timestamp = self.started_at.strftime("%Y-%m-%d_%H%M%S")
|
||||
slug = _slugify_action(self.action)
|
||||
candidate = self.out_dir / f"{timestamp}_{slug}_raw_calls.md"
|
||||
suffix = 2
|
||||
while candidate.exists():
|
||||
candidate = (
|
||||
self.out_dir
|
||||
/ f"{timestamp}_{slug}_raw_calls_{suffix:02d}.md"
|
||||
)
|
||||
suffix += 1
|
||||
self.file_path = candidate
|
||||
return self.file_path
|
||||
|
||||
def _write_file(self) -> None:
|
||||
path = self._resolve_file_path()
|
||||
path.parent.mkdir(parents=True, exist_ok=True)
|
||||
path.write_text(_render_markdown(self), encoding="utf-8")
|
||||
|
||||
|
||||
_active_session: contextvars.ContextVar[Optional[CallLogContext]] = (
|
||||
contextvars.ContextVar("_active_session", default=None)
|
||||
)
|
||||
|
||||
|
||||
def active_session() -> Optional[CallLogContext]:
|
||||
"""Return the currently active :class:`CallLogContext`, if any."""
|
||||
return _active_session.get()
|
||||
|
||||
|
||||
@contextmanager
|
||||
def session(action: str, out_dir: Path) -> Iterator[CallLogContext]:
|
||||
"""Open a per-action debug session.
|
||||
|
||||
On entry, sets the module-level ``_active_session`` ContextVar so any
|
||||
``wrap_rpc_http``'d clients on the same thread/task record their calls.
|
||||
On exit, the previous active session (if any) is restored.
|
||||
"""
|
||||
ctx = CallLogContext(
|
||||
action=str(action),
|
||||
out_dir=Path(out_dir),
|
||||
started_at=datetime.now(),
|
||||
)
|
||||
token = _active_session.set(ctx)
|
||||
try:
|
||||
yield ctx
|
||||
finally:
|
||||
_active_session.reset(token)
|
||||
|
||||
|
||||
def wrap_rpc_http(rpc: Any) -> None:
|
||||
"""Idempotently wrap ``rpc.post`` / ``rpc.get``.
|
||||
|
||||
When a session is active (``_active_session.get() is not None``), the
|
||||
wrapped methods perform the HTTP call themselves with ``requests`` and
|
||||
record the call before returning the same value ``BaseRequest`` would have
|
||||
returned. When no session is active, the wrapped methods delegate to the
|
||||
original implementation, preserving stock ``BaseRequest`` behavior.
|
||||
|
||||
Calling this twice on the same instance is a no-op. The wrapper does not
|
||||
alter ``rpc.form_post`` (no Sirna action calls it as of plan 3).
|
||||
"""
|
||||
if rpc is None:
|
||||
return
|
||||
if getattr(rpc, "_debug_call_log_wrapped", False):
|
||||
return
|
||||
|
||||
rpc._orig_post = rpc.post
|
||||
rpc._orig_get = rpc.get
|
||||
|
||||
def _wrapped_post(
|
||||
url: str,
|
||||
params: Any = None,
|
||||
files: Any = None,
|
||||
headers: Optional[dict] = None,
|
||||
) -> Any:
|
||||
ctx = _active_session.get()
|
||||
if ctx is None:
|
||||
kwargs = {}
|
||||
if params is not None:
|
||||
kwargs["params"] = params
|
||||
if files is not None:
|
||||
kwargs["files"] = files
|
||||
if headers is not None:
|
||||
kwargs["headers"] = headers
|
||||
return rpc._orig_post(url, **kwargs)
|
||||
effective_params = params if params is not None else {}
|
||||
effective_headers = (
|
||||
headers
|
||||
if headers is not None
|
||||
else {"Content-Type": "application/json"}
|
||||
)
|
||||
source = _detect_source(rpc)
|
||||
request_body = _redact(effective_params)
|
||||
record = CallRecord(
|
||||
index=0,
|
||||
method="POST",
|
||||
url=str(url),
|
||||
path=_url_path(url),
|
||||
source=source,
|
||||
transport=_pick_transport(effective_params),
|
||||
http_status=None,
|
||||
request_body=request_body,
|
||||
response_body=None,
|
||||
error=None,
|
||||
)
|
||||
return_value: Any = None
|
||||
try:
|
||||
response = requests.post(
|
||||
url,
|
||||
data=json.dumps(effective_params) if effective_params else None,
|
||||
headers=effective_headers,
|
||||
timeout=_DEFAULT_TIMEOUT_POST,
|
||||
files=files,
|
||||
)
|
||||
except Exception as exc: # pragma: no cover - delegated to logger
|
||||
record.error = f"transport error: {exc}"
|
||||
try:
|
||||
rpc.get_logger().error(f"Request ERROR: {exc}")
|
||||
except Exception:
|
||||
pass
|
||||
ctx.append(record)
|
||||
return None
|
||||
|
||||
record.http_status = response.status_code
|
||||
record.response_body, parse_error = _decode_response_body(response)
|
||||
try:
|
||||
rpc.get_logger().debug(
|
||||
f"Request >>> : {response.request.body} "
|
||||
f"{response.status_code} {response.text}"
|
||||
)
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
if response.status_code == 200:
|
||||
if parse_error is not None:
|
||||
record.error = f"json parse error: {parse_error}"
|
||||
return_value = None
|
||||
else:
|
||||
return_value = record.response_body
|
||||
else:
|
||||
record.error = f"HTTP {response.status_code}: {response.text}"
|
||||
try:
|
||||
rpc.get_logger().error(
|
||||
f"Request ERROR: ('Request ERROR:', {response.text!r})"
|
||||
)
|
||||
except Exception:
|
||||
pass
|
||||
return_value = None
|
||||
|
||||
ctx.append(record)
|
||||
return return_value
|
||||
|
||||
def _wrapped_get(
|
||||
url: str,
|
||||
params: Any = None,
|
||||
headers: Optional[dict] = None,
|
||||
) -> Any:
|
||||
ctx = _active_session.get()
|
||||
if ctx is None:
|
||||
kwargs = {}
|
||||
if params is not None:
|
||||
kwargs["params"] = params
|
||||
if headers is not None:
|
||||
kwargs["headers"] = headers
|
||||
return rpc._orig_get(url, **kwargs)
|
||||
effective_params = params if params is not None else {}
|
||||
effective_headers = (
|
||||
headers
|
||||
if headers is not None
|
||||
else {"Content-Type": "application/json"}
|
||||
)
|
||||
source = _detect_source(rpc)
|
||||
request_body = _redact(effective_params)
|
||||
record = CallRecord(
|
||||
index=0,
|
||||
method="GET",
|
||||
url=str(url),
|
||||
path=_url_path(url),
|
||||
source=source,
|
||||
transport="params",
|
||||
http_status=None,
|
||||
request_body=request_body,
|
||||
response_body=None,
|
||||
error=None,
|
||||
)
|
||||
return_value: Any = None
|
||||
try:
|
||||
response = requests.get(
|
||||
url,
|
||||
params=effective_params,
|
||||
headers=effective_headers,
|
||||
timeout=_DEFAULT_TIMEOUT_GET,
|
||||
)
|
||||
except Exception as exc: # pragma: no cover - delegated to logger
|
||||
record.error = f"transport error: {exc}"
|
||||
try:
|
||||
rpc.get_logger().error(f"Request ERROR: {exc}")
|
||||
except Exception:
|
||||
pass
|
||||
ctx.append(record)
|
||||
return None
|
||||
|
||||
record.http_status = response.status_code
|
||||
record.response_body, parse_error = _decode_response_body(response)
|
||||
try:
|
||||
rpc.get_logger().debug(
|
||||
f"Request >>> : {effective_params} "
|
||||
f"{response.status_code} {response.text}"
|
||||
)
|
||||
except Exception:
|
||||
pass
|
||||
|
||||
if response.status_code == 200:
|
||||
if parse_error is not None:
|
||||
record.error = f"json parse error: {parse_error}"
|
||||
return_value = None
|
||||
else:
|
||||
return_value = record.response_body
|
||||
|
||||
ctx.append(record)
|
||||
return return_value
|
||||
|
||||
rpc.post = _wrapped_post
|
||||
rpc.get = _wrapped_get
|
||||
rpc._debug_call_log_wrapped = True
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Helpers
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
|
||||
_URL_PATH_RE = re.compile(r"https?://[^/]+(/.*)?$")
|
||||
_SLUG_RE = re.compile(r"[^A-Za-z0-9._-]+")
|
||||
|
||||
|
||||
def _slugify_action(action: str) -> str:
|
||||
slug = _SLUG_RE.sub("_", str(action)).strip("_")
|
||||
return slug or "action"
|
||||
|
||||
|
||||
def _url_path(url: Any) -> str:
|
||||
text = str(url or "")
|
||||
match = _URL_PATH_RE.match(text)
|
||||
if match and match.group(1):
|
||||
return match.group(1)
|
||||
if text.startswith("/"):
|
||||
return text
|
||||
return text
|
||||
|
||||
|
||||
def _pick_transport(params: Any) -> str:
|
||||
if isinstance(params, dict) and "data" in params:
|
||||
return "data"
|
||||
return "params"
|
||||
|
||||
|
||||
def _detect_source(rpc: Any) -> str:
|
||||
"""Walk the call stack to find the outermost frame whose ``self`` is rpc."""
|
||||
try:
|
||||
stack = inspect.stack()
|
||||
except Exception:
|
||||
return ""
|
||||
candidate = ""
|
||||
try:
|
||||
for frame_info in stack:
|
||||
frame = frame_info.frame
|
||||
if frame.f_locals.get("self", None) is rpc:
|
||||
candidate = frame_info.function
|
||||
return candidate
|
||||
finally:
|
||||
del stack
|
||||
|
||||
|
||||
def _redact(params: Any) -> Any:
|
||||
"""Return a copy of ``params`` with ``apiKey`` redacted."""
|
||||
try:
|
||||
cloned = copy.deepcopy(params)
|
||||
except Exception:
|
||||
return params
|
||||
_redact_in_place(cloned)
|
||||
return cloned
|
||||
|
||||
|
||||
def _redact_in_place(value: Any) -> None:
|
||||
if isinstance(value, dict):
|
||||
for key in list(value.keys()):
|
||||
if isinstance(key, str) and key.lower() == "apikey":
|
||||
value[key] = "<redacted>"
|
||||
else:
|
||||
_redact_in_place(value[key])
|
||||
elif isinstance(value, list):
|
||||
for item in value:
|
||||
_redact_in_place(item)
|
||||
|
||||
|
||||
def _decode_response_body(response: Any) -> tuple[Any, Optional[str]]:
|
||||
"""Best-effort response decoding used for both record + return value."""
|
||||
text = getattr(response, "text", "")
|
||||
try:
|
||||
return response.json(), None
|
||||
except Exception as exc:
|
||||
if text:
|
||||
return {"raw_text": text}, str(exc)
|
||||
return None, str(exc)
|
||||
|
||||
|
||||
# ---------------------------------------------------------------------------
|
||||
# Markdown rendering
|
||||
# ---------------------------------------------------------------------------
|
||||
|
||||
|
||||
def _render_markdown(ctx: CallLogContext) -> str:
|
||||
title = f"# {ctx.action} Raw Call/Response Log"
|
||||
parts: List[str] = [title, ""]
|
||||
parts.append("## LIMS Calls")
|
||||
parts.append("")
|
||||
parts.append("| # | Method | Path | Source | HTTP |")
|
||||
parts.append("|---|---|---|---|---|")
|
||||
for record in ctx.calls:
|
||||
anchor = _row_anchor(record)
|
||||
http = (
|
||||
f"`{record.http_status}`"
|
||||
if record.http_status is not None
|
||||
else "`-`"
|
||||
)
|
||||
parts.append(
|
||||
f"| [{record.index}](#{anchor}) | `{record.method}` | "
|
||||
f"`{record.path}` | `{record.source}` | {http} |"
|
||||
)
|
||||
parts.append("")
|
||||
|
||||
for record in ctx.calls:
|
||||
parts.append(f"## {record.index} {record.method} {record.path}")
|
||||
parts.append("")
|
||||
parts.append(f"- Source: `{record.source}`")
|
||||
parts.append(f"- Transport: `{record.transport}`")
|
||||
if record.http_status is not None:
|
||||
parts.append(f"- HTTP status: `{record.http_status}`")
|
||||
else:
|
||||
parts.append("- HTTP status: `-`")
|
||||
if record.error:
|
||||
parts.append(f"- Error: {record.error}")
|
||||
parts.append("")
|
||||
parts.append("### Request Body")
|
||||
parts.append("")
|
||||
parts.append("```json")
|
||||
parts.append(_to_json_block(record.request_body))
|
||||
parts.append("```")
|
||||
parts.append("")
|
||||
parts.append("### Response Body")
|
||||
parts.append("")
|
||||
parts.append("```json")
|
||||
parts.append(_to_json_block(record.response_body))
|
||||
parts.append("```")
|
||||
parts.append("")
|
||||
|
||||
return "\n".join(parts).rstrip() + "\n"
|
||||
|
||||
|
||||
def _row_anchor(record: CallRecord) -> str:
|
||||
"""Build a GitHub-style anchor matching ``## N METHOD /path``."""
|
||||
raw = f"{record.index}-{record.method}-{record.path}"
|
||||
raw = raw.lower()
|
||||
raw = re.sub(r"[^a-z0-9]+", "-", raw)
|
||||
return raw.strip("-")
|
||||
|
||||
|
||||
def _to_json_block(value: Any) -> str:
|
||||
try:
|
||||
return json.dumps(value, ensure_ascii=False, indent=2, sort_keys=True)
|
||||
except TypeError:
|
||||
return json.dumps(str(value), ensure_ascii=False, indent=2)
|
||||
@@ -0,0 +1,3 @@
|
||||
from .sirna_station import BioyondSirnaStation, fetch_workflow_list, load_sirna_config
|
||||
|
||||
__all__ = ["BioyondSirnaStation", "fetch_workflow_list", "load_sirna_config"]
|
||||
File diff suppressed because it is too large
Load Diff
@@ -7,6 +7,7 @@ Bioyond Workstation Implementation
|
||||
import time
|
||||
import traceback
|
||||
import threading
|
||||
from contextlib import contextmanager
|
||||
from datetime import datetime
|
||||
from typing import Dict, Any, List, Optional, Union
|
||||
import json
|
||||
@@ -14,6 +15,7 @@ from pathlib import Path
|
||||
|
||||
from unilabos.devices.workstation.workstation_base import WorkstationBase, ResourceSynchronizer
|
||||
from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondV1RPC
|
||||
from unilabos.devices.workstation.bioyond_studio import debug_call_log
|
||||
from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
|
||||
from unilabos.resources.warehouse import WareHouse
|
||||
from unilabos.utils.log import logger
|
||||
@@ -174,6 +176,8 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
logger.warning("从Bioyond获取的物料数据为空")
|
||||
return False
|
||||
|
||||
self._update_material_cache_from_stock(all_bioyond_data)
|
||||
|
||||
# 转换为UniLab格式
|
||||
unilab_resources = resource_bioyond_to_plr(
|
||||
all_bioyond_data,
|
||||
@@ -187,6 +191,29 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
|
||||
logger.error(f"从Bioyond同步物料数据失败: {e}")
|
||||
return False
|
||||
|
||||
def _update_material_cache_from_stock(self, materials: List[Dict[str, Any]]) -> None:
|
||||
"""用本次库存查询结果同步 RPC 的 name -> material id 缓存。"""
|
||||
material_cache = getattr(self.bioyond_api_client, "material_cache", None)
|
||||
if not isinstance(material_cache, dict):
|
||||
return
|
||||
|
||||
before_count = len(material_cache)
|
||||
for material in materials:
|
||||
material_name = material.get("name")
|
||||
material_id = material.get("id")
|
||||
if material_name and material_id:
|
||||
material_cache[material_name] = material_id
|
||||
|
||||
for detail_material in material.get("detail", []) or []:
|
||||
detail_name = detail_material.get("name")
|
||||
detail_id = detail_material.get("detailMaterialId") or detail_material.get("id")
|
||||
if detail_name and detail_id:
|
||||
material_cache[detail_name] = detail_id
|
||||
|
||||
logger.debug(
|
||||
f"已用Bioyond库存同步物料缓存: {before_count} -> {len(material_cache)}"
|
||||
)
|
||||
|
||||
def sync_to_external(self, resource: Any) -> bool:
|
||||
"""将本地物料数据变更同步到Bioyond系统"""
|
||||
try:
|
||||
@@ -678,6 +705,70 @@ class BioyondWorkstation(WorkstationBase):
|
||||
集成Bioyond物料管理的工作站实现
|
||||
"""
|
||||
|
||||
# 子类(如 sirna / peptide)覆写以指定默认 raw-call 日志目录。
|
||||
# 路径相对仓库根;为 None 时若 debug_log=True 仍会写入临时位置。
|
||||
_DEBUG_LOG_DEFAULT_DIR: Optional[str] = None
|
||||
|
||||
def _create_bioyond_rpc(self, config: Dict[str, Any]) -> BioyondV1RPC:
|
||||
"""创建 Bioyond RPC 客户端并应用调试包装。
|
||||
|
||||
所有创建 ``BioyondV1RPC`` 的路径(饿汉初始化、Sirna 延迟初始化、
|
||||
以及未来的前端重新配置路径)都应通过该 helper,
|
||||
以确保 debug_log 包装与命名/日志策略保持一致。
|
||||
"""
|
||||
rpc = BioyondV1RPC(config)
|
||||
debug_call_log.wrap_rpc_http(rpc)
|
||||
return rpc
|
||||
|
||||
def _set_hardware_interface(self, rpc: BioyondV1RPC) -> BioyondV1RPC:
|
||||
"""将已构造的 RPC 客户端设置到 ``self.hardware_interface``,并应用调试包装。"""
|
||||
debug_call_log.wrap_rpc_http(rpc)
|
||||
self.hardware_interface = rpc
|
||||
return rpc
|
||||
|
||||
def _debug_log_resolved_dir(self) -> Path:
|
||||
"""解析 ``debug_log_dir`` 为绝对路径。"""
|
||||
configured = (getattr(self, "bioyond_config", {}) or {}).get("debug_log_dir")
|
||||
default_dir = getattr(self, "_DEBUG_LOG_DEFAULT_DIR", None)
|
||||
candidate = configured or default_dir or "temp_benyao/_logs/bioyond_debug"
|
||||
path = Path(candidate)
|
||||
if not path.is_absolute():
|
||||
repo_root = Path(__file__).resolve().parents[4]
|
||||
path = repo_root / path
|
||||
return path
|
||||
|
||||
def _ensure_debug_log_state(self) -> None:
|
||||
"""从 ``self.bioyond_config`` 派生 ``_debug_log_enabled`` / ``_debug_log_dir``。
|
||||
|
||||
每次进入 ``_debug_call_session`` 时都重新解析,以兼容前端在运行时
|
||||
修改 ``bioyond_config['debug_log']`` 或目录的场景;同时也容忍
|
||||
子类(如 Sirna 延迟初始化)在 ``__init__`` 早期未触发本方法。
|
||||
"""
|
||||
cfg = getattr(self, "bioyond_config", {}) or {}
|
||||
self._debug_log_enabled = bool(cfg.get("debug_log"))
|
||||
self._debug_log_dir = self._debug_log_resolved_dir()
|
||||
|
||||
@contextmanager
|
||||
def _debug_call_session(self, action_name: str):
|
||||
"""在 action 体外加一层 debug 会话上下文。
|
||||
|
||||
- ``debug_log`` 关闭时是空上下文,开销为 0。
|
||||
- ``debug_log`` 开启时进入 :func:`debug_call_log.session`,所有
|
||||
已被 ``wrap_rpc_http`` 包装过的 RPC 客户端都会捕获本次 action
|
||||
产生的 HTTP 调用并写入 Markdown 文件。
|
||||
|
||||
子类(如 ``end_experiment``、``manual_unload`` 等)可以直接在
|
||||
action 体里以 ``with self._debug_call_session("action_name"):`` 包裹。
|
||||
"""
|
||||
cfg = getattr(self, "bioyond_config", {}) or {}
|
||||
enabled = bool(cfg.get("debug_log"))
|
||||
if not enabled:
|
||||
yield None
|
||||
return
|
||||
out_dir = BioyondWorkstation._debug_log_resolved_dir(self)
|
||||
with debug_call_log.session(action_name, out_dir) as ctx:
|
||||
yield ctx
|
||||
|
||||
def _publish_task_status(
|
||||
self,
|
||||
task_id: str,
|
||||
@@ -862,7 +953,7 @@ class BioyondWorkstation(WorkstationBase):
|
||||
self.bioyond_config = {}
|
||||
print("警告: 未提供 bioyond_config,请确保在 JSON 配置文件中提供完整配置")
|
||||
|
||||
self.hardware_interface = BioyondV1RPC(self.bioyond_config)
|
||||
self.hardware_interface = self._create_bioyond_rpc(self.bioyond_config)
|
||||
|
||||
def resource_tree_add(self, resources: List[ResourcePLR]) -> None:
|
||||
"""添加资源到资源树并更新ROS节点
|
||||
@@ -1338,11 +1429,7 @@ class BioyondWorkstation(WorkstationBase):
|
||||
if self.hardware_interface:
|
||||
self.hardware_interface.scheduler_reset()
|
||||
|
||||
# 刷新物料缓存
|
||||
if self.hardware_interface:
|
||||
self.hardware_interface.refresh_material_cache()
|
||||
|
||||
# 重新同步资源
|
||||
# 重新同步资源,并用同一次库存查询结果更新物料缓存
|
||||
if self.resource_synchronizer:
|
||||
self.resource_synchronizer.sync_from_external()
|
||||
|
||||
|
||||
@@ -0,0 +1 @@
|
||||
from . import sirna_materials # noqa: F401 ensure @resource classes are importable for PLR deserialize
|
||||
|
||||
@@ -1,6 +1,8 @@
|
||||
from os import name
|
||||
|
||||
from pylabrobot.resources import Deck, Coordinate, Rotation
|
||||
|
||||
from unilabos.registry.decorators import resource
|
||||
from unilabos.resources.bioyond.YB_warehouses import (
|
||||
bioyond_warehouse_1x4x4,
|
||||
bioyond_warehouse_1x4x4_right, # 新增:右侧仓库 (A05~D08)
|
||||
@@ -23,6 +25,11 @@ from unilabos.resources.bioyond.YB_warehouses import (
|
||||
from unilabos.resources.bioyond.warehouses import (
|
||||
bioyond_warehouse_tipbox_storage_left, # 新增:Tip盒堆栈(左)
|
||||
bioyond_warehouse_tipbox_storage_right, # 新增:Tip盒堆栈(右)
|
||||
bioyond_warehouse_sirna_automation_stack,
|
||||
bioyond_warehouse_sirna_centrifuge_balance_plate_stack,
|
||||
bioyond_warehouse_sirna_g3_liquid_handler,
|
||||
bioyond_warehouse_numeric_stack, # 新增:数字编码堆栈 (用于多肽站)
|
||||
bioyond_warehouse_live_grid,
|
||||
)
|
||||
|
||||
|
||||
@@ -101,6 +108,83 @@ class BIOYOND_PolymerPreparationStation_Deck(Deck):
|
||||
for warehouse_name, warehouse in self.warehouses.items():
|
||||
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
|
||||
|
||||
@resource(
|
||||
id="BIOYOND_SirnaStation_Deck",
|
||||
category=["deck"],
|
||||
description="BIOYOND 小核酸工作站 Deck",
|
||||
icon="配液站.webp",
|
||||
)
|
||||
class BIOYOND_SirnaStation_Deck(Deck):
|
||||
WAREHOUSE_BIOYOND_AXIS = {
|
||||
"G3移液站": "xy_col_row",
|
||||
"自动化堆栈": "xy_col_row",
|
||||
"离心机配平板堆栈": "xy_col_row",
|
||||
}
|
||||
WAREHOUSE_BIOYOND_KEY_AXIS = {
|
||||
"G3移液站": "col_row",
|
||||
"自动化堆栈": "col_row",
|
||||
"离心机配平板堆栈": "col_row",
|
||||
}
|
||||
# Bioyond warehouse UUID -> 本地仓库名称 映射。
|
||||
# 留空时由配置(station config 的 ``warehouse_bioyond_ids``)注入。
|
||||
# graph 节点也可在 deck.config.warehouse_bioyond_ids 覆盖。
|
||||
WAREHOUSE_BIOYOND_IDS: dict = {}
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
name: str = "SirnaStation_Deck",
|
||||
size_x: float = 2700.0,
|
||||
size_y: float = 1080.0,
|
||||
size_z: float = 1500.0,
|
||||
category: str = "deck",
|
||||
setup: bool = False,
|
||||
warehouse_bioyond_ids: dict | None = None,
|
||||
**kwargs,
|
||||
) -> None:
|
||||
super().__init__(name=name, size_x=size_x, size_y=size_y, size_z=size_z)
|
||||
# 按需写入实例级覆盖;保留默认空 mapping,避免改动模型常量。
|
||||
self.warehouse_bioyond_ids: dict = dict(self.WAREHOUSE_BIOYOND_IDS)
|
||||
if warehouse_bioyond_ids:
|
||||
self.warehouse_bioyond_ids.update(warehouse_bioyond_ids)
|
||||
if setup:
|
||||
self.setup()
|
||||
|
||||
@classmethod
|
||||
def deserialize(cls, data: dict, allow_marshal: bool = False):
|
||||
if data.get("children") and data.get("setup") is True:
|
||||
data = data.copy()
|
||||
data["setup"] = False
|
||||
result = super().deserialize(data, allow_marshal=allow_marshal)
|
||||
result._ensure_sirna_warehouse_metadata()
|
||||
return result
|
||||
|
||||
def _ensure_sirna_warehouse_metadata(self) -> None:
|
||||
for child in getattr(self, "children", []):
|
||||
name = getattr(child, "name", "")
|
||||
axis = self.WAREHOUSE_BIOYOND_AXIS.get(name)
|
||||
if axis and not hasattr(child, "bioyond_axis"):
|
||||
child.bioyond_axis = axis
|
||||
key_axis = self.WAREHOUSE_BIOYOND_KEY_AXIS.get(name)
|
||||
if key_axis and not hasattr(child, "bioyond_key_axis"):
|
||||
child.bioyond_key_axis = key_axis
|
||||
|
||||
def setup(self) -> None:
|
||||
# Sirna 读接口 /api/storage/location/locations-by-type 返回完整固定堆栈清单。
|
||||
# LIMS 在库物料接口仍使用相同的 自动化堆栈 名称和数字库位编码。
|
||||
self.warehouses = {
|
||||
"G3移液站": bioyond_warehouse_sirna_g3_liquid_handler(),
|
||||
"自动化堆栈": bioyond_warehouse_sirna_automation_stack(),
|
||||
"离心机配平板堆栈": bioyond_warehouse_sirna_centrifuge_balance_plate_stack(),
|
||||
}
|
||||
self.warehouse_locations = {
|
||||
"G3移液站": Coordinate(0.0, 0.0, 0.0),
|
||||
"自动化堆栈": Coordinate(220.0, 0.0, 0.0),
|
||||
"离心机配平板堆栈": Coordinate(1740.0, 0.0, 0.0),
|
||||
}
|
||||
|
||||
for warehouse_name, warehouse in self.warehouses.items():
|
||||
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
|
||||
|
||||
class BIOYOND_YB_Deck(Deck):
|
||||
def __init__(
|
||||
self,
|
||||
@@ -150,12 +234,146 @@ class BIOYOND_YB_Deck(Deck):
|
||||
for warehouse_name, warehouse in self.warehouses.items():
|
||||
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
|
||||
|
||||
@resource(
|
||||
id="BIOYOND_PeptideStation_Deck",
|
||||
category=["deck"],
|
||||
description="BIOYOND 多肽工作站 Deck",
|
||||
icon="preparation_station.webp",
|
||||
)
|
||||
class BIOYOND_PeptideStation_Deck(Deck):
|
||||
WAREHOUSE_BIOYOND_AXIS = dict.fromkeys(
|
||||
[
|
||||
"自动化堆栈",
|
||||
"低温冰箱仓库",
|
||||
"Tecan移液站库",
|
||||
"G3移液站库",
|
||||
"IDOT移液站库",
|
||||
"G3缓冲库",
|
||||
"盖板缓冲库",
|
||||
"配平板缓冲库",
|
||||
"IDOT缓冲库",
|
||||
"固相合成板底座缓冲位",
|
||||
"离心机库位",
|
||||
"热封膜机位",
|
||||
],
|
||||
"xy_col_row",
|
||||
)
|
||||
WAREHOUSE_BIOYOND_KEY_AXIS = dict.fromkeys(WAREHOUSE_BIOYOND_AXIS, "row_col")
|
||||
|
||||
def __init__(
|
||||
self,
|
||||
name: str = "PeptideStation_Deck",
|
||||
size_x: float = 3500.0,
|
||||
size_y: float = 1800.0,
|
||||
size_z: float = 1500.0,
|
||||
category: str = "deck",
|
||||
setup: bool = False
|
||||
) -> None:
|
||||
super().__init__(name=name, size_x=size_x, size_y=size_y, size_z=size_z)
|
||||
if setup:
|
||||
self.setup()
|
||||
|
||||
@classmethod
|
||||
def deserialize(cls, data: dict, allow_marshal: bool = False):
|
||||
if data.get("children") and data.get("setup") is True:
|
||||
# 已有序列化子资源,跳过 setup 避免重复创建
|
||||
result = super(BIOYOND_PeptideStation_Deck, cls).deserialize(data, allow_marshal=allow_marshal)
|
||||
else:
|
||||
result = super(BIOYOND_PeptideStation_Deck, cls).deserialize(data, allow_marshal=allow_marshal)
|
||||
result._ensure_peptide_warehouse_metadata()
|
||||
return result
|
||||
|
||||
def _ensure_peptide_warehouse_metadata(self) -> None:
|
||||
for child in getattr(self, "children", []):
|
||||
name = getattr(child, "name", "")
|
||||
axis = self.WAREHOUSE_BIOYOND_AXIS.get(name)
|
||||
if axis and not hasattr(child, "bioyond_axis"):
|
||||
child.bioyond_axis = axis
|
||||
key_axis = self.WAREHOUSE_BIOYOND_KEY_AXIS.get(name)
|
||||
if key_axis and not hasattr(child, "bioyond_key_axis"):
|
||||
child.bioyond_key_axis = key_axis
|
||||
|
||||
def setup(self) -> None:
|
||||
# 多肽工作站仓库配置
|
||||
# 基于 2026-05-09 live API probe 发现的实际仓库拓扑 (12个仓库)
|
||||
# 数据来源: temp_benyao/peptide/_logs/warehouse_discovery_raw_live_2026-05-09.json
|
||||
self.warehouses = {
|
||||
# 主自动化堆栈 - live API: code 10-17 -> x=17, y=10,显示为 10 行×17 列
|
||||
"自动化堆栈": bioyond_warehouse_numeric_stack(
|
||||
"自动化堆栈", rows=10, columns=17, bioyond_axis="xy_col_row", bioyond_key_axis="row_col"
|
||||
),
|
||||
|
||||
# 低温存储
|
||||
"低温冰箱仓库": bioyond_warehouse_live_grid(
|
||||
"低温冰箱仓库", rows=2, columns=3, slot_keys=["1", "2", "3", "4", "5", "6"]
|
||||
),
|
||||
|
||||
# 移液站库位
|
||||
"Tecan移液站库": bioyond_warehouse_live_grid(
|
||||
"Tecan移液站库", rows=1, columns=18, slot_keys=[str(index) for index in range(1, 19)]
|
||||
),
|
||||
"G3移液站库": bioyond_warehouse_live_grid(
|
||||
"G3移液站库",
|
||||
rows=1,
|
||||
columns=18,
|
||||
slot_keys=["1", "2", "3", "4", "垃圾桶", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18"],
|
||||
),
|
||||
"IDOT移液站库": bioyond_warehouse_live_grid(
|
||||
"IDOT移液站库",
|
||||
rows=1,
|
||||
columns=12,
|
||||
slot_keys=[f"0009-{index:04d}" for index in range(1, 13)],
|
||||
),
|
||||
|
||||
# 缓冲库位
|
||||
"G3缓冲库": bioyond_warehouse_live_grid(
|
||||
"G3缓冲库", rows=1, columns=5, slot_keys=[str(index) for index in range(1, 6)]
|
||||
),
|
||||
"盖板缓冲库": bioyond_warehouse_live_grid(
|
||||
"盖板缓冲库", rows=1, columns=7, slot_keys=[str(index) for index in range(1, 8)]
|
||||
),
|
||||
"配平板缓冲库": bioyond_warehouse_live_grid(
|
||||
"配平板缓冲库", rows=1, columns=3, slot_keys=[str(index) for index in range(1, 4)]
|
||||
),
|
||||
"IDOT缓冲库": bioyond_warehouse_live_grid(
|
||||
"IDOT缓冲库", rows=1, columns=2, slot_keys=["1", "1"]
|
||||
),
|
||||
"固相合成板底座缓冲位": bioyond_warehouse_live_grid(
|
||||
"固相合成板底座缓冲位",
|
||||
rows=1,
|
||||
columns=4,
|
||||
slot_keys=[f"0015-{index:04d}" for index in range(1, 5)],
|
||||
),
|
||||
|
||||
# 设备库位
|
||||
"离心机库位": bioyond_warehouse_live_grid(
|
||||
"离心机库位", rows=1, columns=4, slot_keys=[f"0017-{index:04d}" for index in range(1, 5)]
|
||||
),
|
||||
"热封膜机位": bioyond_warehouse_live_grid(
|
||||
"热封膜机位", rows=1, columns=2, slot_keys=[f"0016-{index:04d}" for index in range(1, 3)]
|
||||
),
|
||||
}
|
||||
|
||||
# 仓库位置布局 (需根据实际硬件布局调整)
|
||||
self.warehouse_locations = {
|
||||
"自动化堆栈": Coordinate(0.0, 0.0, 0.0),
|
||||
"Tecan移液站库": Coordinate(0.0, 1150.0, 0.0),
|
||||
"G3移液站库": Coordinate(0.0, 1300.0, 0.0),
|
||||
"IDOT移液站库": Coordinate(0.0, 1450.0, 0.0),
|
||||
"G3缓冲库": Coordinate(0.0, 1600.0, 0.0),
|
||||
"盖板缓冲库": Coordinate(850.0, 1600.0, 0.0),
|
||||
"低温冰箱仓库": Coordinate(2700.0, 0.0, 0.0),
|
||||
"配平板缓冲库": Coordinate(2700.0, 300.0, 0.0),
|
||||
"IDOT缓冲库": Coordinate(2700.0, 450.0, 0.0),
|
||||
"固相合成板底座缓冲位": Coordinate(2700.0, 600.0, 0.0),
|
||||
"离心机库位": Coordinate(2700.0, 750.0, 0.0),
|
||||
"热封膜机位": Coordinate(2700.0, 900.0, 0.0),
|
||||
}
|
||||
|
||||
for warehouse_name, warehouse in self.warehouses.items():
|
||||
self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
|
||||
|
||||
def YB_Deck(name: str) -> Deck:
|
||||
by=BIOYOND_YB_Deck(name=name)
|
||||
by.setup()
|
||||
return by
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
126
unilabos/resources/bioyond/sirna_materials.py
Normal file
126
unilabos/resources/bioyond/sirna_materials.py
Normal file
@@ -0,0 +1,126 @@
|
||||
"""Sirna Station Material Resource Definitions
|
||||
|
||||
Defines PyLabRobot resource classes for Bioyond Sirna station materials.
|
||||
Each class is decorated with @resource for AST-based registry discovery.
|
||||
"""
|
||||
|
||||
from collections import OrderedDict
|
||||
|
||||
from pylabrobot.resources import Plate, TipRack, Container
|
||||
|
||||
from unilabos.registry.decorators import resource
|
||||
|
||||
|
||||
@resource(
|
||||
id="bioyond_sirna_g3_200ul_tip_rack",
|
||||
category=["labware", "tip_rack"],
|
||||
description="G3-200ul枪头盒 for Sirna station",
|
||||
)
|
||||
class BioyondSirna_G3_200ul_TipRack(TipRack):
|
||||
"""G3-200ul tip rack for Sirna liquid handling."""
|
||||
|
||||
def __init__(self, *args, **kwargs):
|
||||
kwargs.setdefault("size_x", 127.76)
|
||||
kwargs.setdefault("size_y", 85.48)
|
||||
kwargs.setdefault("size_z", 64.0)
|
||||
kwargs.setdefault("model", "bioyond_sirna_g3_200ul_tip_rack")
|
||||
kwargs.setdefault("with_tips", True)
|
||||
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
|
||||
kwargs["ordering"] = OrderedDict()
|
||||
super().__init__(*args, **kwargs)
|
||||
|
||||
|
||||
@resource(
|
||||
id="bioyond_sirna_g3_50ul_tip_rack",
|
||||
category=["labware", "tip_rack"],
|
||||
description="G3-50ul枪头盒 for Sirna station",
|
||||
)
|
||||
class BioyondSirna_G3_50ul_TipRack(TipRack):
|
||||
"""G3-50ul tip rack for Sirna liquid handling."""
|
||||
|
||||
def __init__(self, *args, **kwargs):
|
||||
kwargs.setdefault("size_x", 127.76)
|
||||
kwargs.setdefault("size_y", 85.48)
|
||||
kwargs.setdefault("size_z", 64.0)
|
||||
kwargs.setdefault("model", "bioyond_sirna_g3_50ul_tip_rack")
|
||||
kwargs.setdefault("with_tips", True)
|
||||
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
|
||||
kwargs["ordering"] = OrderedDict()
|
||||
super().__init__(*args, **kwargs)
|
||||
|
||||
|
||||
@resource(
|
||||
id="bioyond_sirna_384_well_plate",
|
||||
category=["labware", "plate"],
|
||||
description="384孔板 for Sirna assays",
|
||||
)
|
||||
class BioyondSirna_384WellPlate(Plate):
|
||||
"""384-well plate for Sirna reporter gene detection."""
|
||||
|
||||
def __init__(self, *args, **kwargs):
|
||||
kwargs.setdefault("size_x", 127.76)
|
||||
kwargs.setdefault("size_y", 85.48)
|
||||
kwargs.setdefault("size_z", 14.35)
|
||||
kwargs.setdefault("model", "bioyond_sirna_384_well_plate")
|
||||
kwargs.setdefault("plate_type", "skirted")
|
||||
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
|
||||
kwargs["ordering"] = OrderedDict()
|
||||
super().__init__(*args, **kwargs)
|
||||
|
||||
|
||||
@resource(
|
||||
id="bioyond_sirna_cell_culture_plate",
|
||||
category=["labware", "plate"],
|
||||
description="细胞培养板 for Sirna cell culture",
|
||||
)
|
||||
class BioyondSirna_CellCulturePlate(Plate):
|
||||
"""Cell culture plate for Sirna experiments."""
|
||||
|
||||
def __init__(self, *args, **kwargs):
|
||||
kwargs.setdefault("size_x", 127.76)
|
||||
kwargs.setdefault("size_y", 85.48)
|
||||
kwargs.setdefault("size_z", 14.35)
|
||||
kwargs.setdefault("model", "bioyond_sirna_cell_culture_plate")
|
||||
kwargs.setdefault("plate_type", "skirted")
|
||||
if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
|
||||
kwargs["ordering"] = OrderedDict()
|
||||
super().__init__(*args, **kwargs)
|
||||
|
||||
|
||||
@resource(
|
||||
id="bioyond_sirna_reagent_trough",
|
||||
category=["labware", "trough"],
|
||||
description="试剂槽 for Sirna reagents",
|
||||
)
|
||||
class BioyondSirna_ReagentTrough(Container):
|
||||
"""Reagent trough for Sirna station reagents (RiboGreen, etc.)."""
|
||||
|
||||
def __init__(self, *args, **kwargs):
|
||||
kwargs.setdefault("size_x", 127.76)
|
||||
kwargs.setdefault("size_y", 85.48)
|
||||
kwargs.setdefault("size_z", 44.0)
|
||||
kwargs.setdefault("max_volume", 300000.0)
|
||||
kwargs.setdefault("model", "bioyond_sirna_reagent_trough")
|
||||
super().__init__(*args, **kwargs)
|
||||
|
||||
|
||||
# Material type code mapping for dynamic instantiation
|
||||
MATERIAL_TYPE_CODE_TO_CLASS = {
|
||||
"0016": BioyondSirna_G3_200ul_TipRack,
|
||||
"0017": BioyondSirna_G3_50ul_TipRack,
|
||||
"0015": BioyondSirna_384WellPlate,
|
||||
"0001": BioyondSirna_CellCulturePlate,
|
||||
"0006": BioyondSirna_ReagentTrough,
|
||||
}
|
||||
|
||||
|
||||
def get_material_class_by_type_code(type_code: str):
|
||||
"""Get resource class by Bioyond material type code.
|
||||
|
||||
Args:
|
||||
type_code: Bioyond materialTypeCode (e.g., "0016", "0017")
|
||||
|
||||
Returns:
|
||||
Resource class or None if not found
|
||||
"""
|
||||
return MATERIAL_TYPE_CODE_TO_CLASS.get(type_code)
|
||||
@@ -1,5 +1,180 @@
|
||||
from pylabrobot.resources import Coordinate
|
||||
from pylabrobot.resources.carrier import ResourceHolder, create_homogeneous_resources
|
||||
|
||||
from unilabos.resources.warehouse import WareHouse, warehouse_factory
|
||||
|
||||
|
||||
class BioyondWareHouse(WareHouse):
|
||||
"""Bioyond 仓库,额外保存服务端 x/y 坐标和库位标签语义。"""
|
||||
|
||||
def __init__(self, *args, bioyond_axis: str = "xy_row_col", bioyond_key_axis: str = "row_col", **kwargs):
|
||||
super().__init__(*args, **kwargs)
|
||||
self.bioyond_axis = bioyond_axis
|
||||
self.bioyond_key_axis = bioyond_key_axis
|
||||
|
||||
def serialize(self) -> dict:
|
||||
data = super().serialize()
|
||||
data["bioyond_axis"] = self.bioyond_axis
|
||||
data["bioyond_key_axis"] = self.bioyond_key_axis
|
||||
return data
|
||||
|
||||
|
||||
def bioyond_warehouse_numeric_stack(
|
||||
name: str,
|
||||
rows: int = 10,
|
||||
columns: int = 17,
|
||||
bioyond_axis: str = "xy_row_col",
|
||||
bioyond_key_axis: str = "row_col",
|
||||
) -> WareHouse:
|
||||
"""创建 Bioyond 数字库位堆栈,库位名使用服务端返回的 行-列 格式。
|
||||
|
||||
bioyond_axis: 仓库级别的 Bioyond 坐标轴约定,供 graphio 的坐标映射使用。
|
||||
- "xy_row_col" (default): Bioyond x→row, y→col (reaction/peptide 历史约定).
|
||||
- "xy_col_row": Bioyond x→col, y→row (Sirna live API 实测约定).
|
||||
bioyond_key_axis: 库位标签生成约定。
|
||||
- "row_col" (default): 视觉行列和标签行列一致,例如 10 行 x 17 列 → 1-1..10-17。
|
||||
- "col_row": 视觉行列转置,但标签仍保持 Bioyond row-col,例如
|
||||
17 行 x 10 列 → 1-1..10-17。
|
||||
未设置时 graphio 回退到默认 "xy_row_col",其他调用方保持原行为。
|
||||
"""
|
||||
num_items_x = columns
|
||||
num_items_y = rows
|
||||
num_items_z = 1
|
||||
dx = 10.0
|
||||
dy = 10.0
|
||||
dz = 10.0
|
||||
item_dx = 147.0
|
||||
item_dy = 106.0
|
||||
item_dz = 130.0
|
||||
locations = [
|
||||
Coordinate(dx + col * item_dx, dy + row * item_dy, dz)
|
||||
for row in range(num_items_y)
|
||||
for col in range(num_items_x)
|
||||
]
|
||||
holders = create_homogeneous_resources(
|
||||
klass=ResourceHolder,
|
||||
locations=locations,
|
||||
resource_size_x=127.0,
|
||||
resource_size_y=86.0,
|
||||
resource_size_z=25.0,
|
||||
name_prefix=name,
|
||||
)
|
||||
if bioyond_key_axis == "row_col":
|
||||
keys = [
|
||||
f"{row + 1}-{col + 1}"
|
||||
for row in range(num_items_y)
|
||||
for col in range(num_items_x)
|
||||
]
|
||||
elif bioyond_key_axis == "col_row":
|
||||
keys = [
|
||||
f"{col + 1}-{row + 1}"
|
||||
for row in range(num_items_y)
|
||||
for col in range(num_items_x)
|
||||
]
|
||||
else:
|
||||
raise ValueError(f"未知 Bioyond 库位标签约定: {bioyond_key_axis!r}")
|
||||
warehouse = BioyondWareHouse(
|
||||
name=name,
|
||||
size_x=dx + item_dx * num_items_x,
|
||||
size_y=dy + item_dy * num_items_y,
|
||||
size_z=dz + item_dz * num_items_z,
|
||||
num_items_x=num_items_x,
|
||||
num_items_y=num_items_y,
|
||||
num_items_z=num_items_z,
|
||||
ordering_layout="row-major",
|
||||
sites={key: holder for key, holder in zip(keys, holders.values())},
|
||||
category="warehouse",
|
||||
bioyond_axis=bioyond_axis,
|
||||
bioyond_key_axis=bioyond_key_axis,
|
||||
)
|
||||
return warehouse
|
||||
|
||||
|
||||
def bioyond_warehouse_live_grid(
|
||||
name: str,
|
||||
rows: int,
|
||||
columns: int,
|
||||
slot_keys: list[str] | None = None,
|
||||
bioyond_axis: str = "xy_col_row",
|
||||
bioyond_key_axis: str = "row_col",
|
||||
) -> WareHouse:
|
||||
"""创建 Bioyond 实测库位网格,按服务端 code 保存位点标签。
|
||||
|
||||
默认用于 Peptide live API 返回的坐标:x 是视觉列,y 是视觉行。
|
||||
当服务端 code 重复时,为保持 PLR ordering 唯一性,会给后续重复项追加 ``#N``。
|
||||
"""
|
||||
num_items_x = columns
|
||||
num_items_y = rows
|
||||
num_items_z = 1
|
||||
dx = 10.0
|
||||
dy = 10.0
|
||||
dz = 10.0
|
||||
item_dx = 147.0
|
||||
item_dy = 106.0
|
||||
item_dz = 130.0
|
||||
locations = [
|
||||
Coordinate(dx + col * item_dx, dy + row * item_dy, dz)
|
||||
for row in range(num_items_y)
|
||||
for col in range(num_items_x)
|
||||
]
|
||||
holders = create_homogeneous_resources(
|
||||
klass=ResourceHolder,
|
||||
locations=locations,
|
||||
resource_size_x=127.0,
|
||||
resource_size_y=86.0,
|
||||
resource_size_z=25.0,
|
||||
name_prefix=name,
|
||||
)
|
||||
keys = slot_keys or [str(index + 1) for index in range(num_items_x * num_items_y)]
|
||||
if len(keys) != len(holders):
|
||||
raise ValueError(f"{name} 库位数量不匹配: keys={len(keys)}, holders={len(holders)}")
|
||||
|
||||
seen: dict[str, int] = {}
|
||||
unique_keys: list[str] = []
|
||||
for key in keys:
|
||||
count = seen.get(key, 0) + 1
|
||||
seen[key] = count
|
||||
unique_keys.append(key if count == 1 else f"{key}#{count}")
|
||||
|
||||
return BioyondWareHouse(
|
||||
name=name,
|
||||
size_x=dx + item_dx * num_items_x,
|
||||
size_y=dy + item_dy * num_items_y,
|
||||
size_z=dz + item_dz * num_items_z,
|
||||
num_items_x=num_items_x,
|
||||
num_items_y=num_items_y,
|
||||
num_items_z=num_items_z,
|
||||
ordering_layout="row-major",
|
||||
sites={key: holder for key, holder in zip(unique_keys, holders.values())},
|
||||
category="warehouse",
|
||||
bioyond_axis=bioyond_axis,
|
||||
bioyond_key_axis=bioyond_key_axis,
|
||||
)
|
||||
|
||||
|
||||
# ================ 小核酸工作站相关堆栈 ================
|
||||
|
||||
def bioyond_warehouse_sirna_g3_liquid_handler(name: str = "G3移液站") -> WareHouse:
|
||||
"""创建小核酸 G3 移液站库位堆栈:显示为 14 行 x 1 列,标签保持 1-1..1-14。"""
|
||||
return bioyond_warehouse_numeric_stack(
|
||||
name, rows=14, columns=1, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
|
||||
)
|
||||
|
||||
|
||||
def bioyond_warehouse_sirna_automation_stack(name: str = "自动化堆栈") -> WareHouse:
|
||||
"""创建小核酸自动化堆栈:显示为 17 行 x 10 列,标签保持 1-1..10-17。"""
|
||||
return bioyond_warehouse_numeric_stack(
|
||||
name, rows=17, columns=10, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
|
||||
)
|
||||
|
||||
|
||||
def bioyond_warehouse_sirna_centrifuge_balance_plate_stack(name: str = "离心机配平板堆栈") -> WareHouse:
|
||||
"""创建小核酸离心机配平板堆栈:显示为 1 行 x 2 列,标签保持 1-1、2-1。"""
|
||||
return bioyond_warehouse_numeric_stack(
|
||||
name, rows=1, columns=2, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
|
||||
)
|
||||
|
||||
|
||||
# ================ 反应站相关堆栈 ================
|
||||
|
||||
def bioyond_warehouse_1x4x4(name: str) -> WareHouse:
|
||||
|
||||
@@ -736,7 +736,7 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
|
||||
logger.warning(f"物料 {unique_name} 不是有效的 ResourcePLR 实例,类型: {type(plr_material)}")
|
||||
continue
|
||||
|
||||
plr_material.code = material.get("code", "") and material.get("barCode", "") or ""
|
||||
plr_material.code = material.get("barCode") or material.get("code") or ""
|
||||
plr_material.unilabos_uuid = str(uuid.uuid4())
|
||||
|
||||
# ⭐ 保存 Bioyond 原始信息到 unilabos_extra(用于出库时查询)
|
||||
@@ -864,11 +864,22 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
|
||||
warehouse = deck.warehouses[wh_name]
|
||||
logger.debug(f"[Warehouse匹配] 找到warehouse: {wh_name} (容量: {warehouse.capacity}, 行×列: {warehouse.num_items_x}×{warehouse.num_items_y})")
|
||||
|
||||
# Bioyond坐标映射 (重要!): x→行(1=A,2=B...), y→列(1=01,2=02...), z→层(通常=1)
|
||||
x = loc.get("x", 1) # 行号 (1-based: 1=A, 2=B, 3=C, 4=D)
|
||||
y = loc.get("y", 1) # 列号 (1-based: 1=01, 2=02, 3=03...)
|
||||
# Bioyond坐标映射:
|
||||
# - 历史 row_col 仓库中 x/y 直接按行/列参与索引。
|
||||
# - Sirna 的库位标签为 col-row,stock-material 返回 x=标签第二段、y=标签第一段。
|
||||
# 因此 x=13,y=4 应落到 key=4-13,而不是交换后落到 3-5。
|
||||
x = loc.get("x", 1)
|
||||
y = loc.get("y", 1)
|
||||
z = loc.get("z", 1) # 层号 (1-based, 通常为1)
|
||||
|
||||
# 仓库级别的轴约定覆盖。
|
||||
# 对旧的 row-col 视觉标签,bioyond_axis="xy_col_row" 需要交换 x/y。
|
||||
# 对 Sirna 的 col-row 库位标签,原始 x/y 已能直接索引到 code 对应位置,不再交换。
|
||||
bioyond_axis = getattr(warehouse, "bioyond_axis", "xy_row_col")
|
||||
bioyond_key_axis = getattr(warehouse, "bioyond_key_axis", "row_col")
|
||||
if bioyond_axis == "xy_col_row" and bioyond_key_axis != "col_row":
|
||||
x, y = y, x
|
||||
|
||||
# 如果是右侧堆栈,需要调整列号 (5→1, 6→2, 7→3, 8→4)
|
||||
if wh_name == "堆栈1右":
|
||||
y = y - 4 # 将5-8映射到1-4
|
||||
@@ -912,10 +923,43 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
|
||||
logger.debug(f"列优先warehouse {wh_name}: x={x}(行),y={y}(列) → row={row_idx},col={col_idx} → idx={idx}")
|
||||
|
||||
if 0 <= idx < warehouse.capacity:
|
||||
if warehouse[idx] is None or isinstance(warehouse[idx], ResourceHolder):
|
||||
slot_key = None
|
||||
ordering = getattr(warehouse, "_ordering", {})
|
||||
sites = getattr(warehouse, "sites", [])
|
||||
if isinstance(ordering, dict) and idx < len(sites):
|
||||
site_at_idx = sites[idx]
|
||||
slot_key = next(
|
||||
(key for key, site in ordering.items() if site is site_at_idx),
|
||||
None,
|
||||
)
|
||||
|
||||
current_resource = warehouse[idx]
|
||||
if current_resource is None or isinstance(current_resource, (ResourceHolder, str)):
|
||||
if isinstance(current_resource, str):
|
||||
logger.warning(
|
||||
f"⚠️ 物料 {unique_name} 覆盖 {wh_name}[{idx}]"
|
||||
f"{f'({slot_key})' if slot_key else ''} 的旧占位 occupied_by={current_resource!r}"
|
||||
)
|
||||
# 物料尺寸已在放入warehouse前根据需要进行了交换
|
||||
warehouse[idx] = plr_material
|
||||
logger.debug(f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}] (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})")
|
||||
logger.debug(
|
||||
f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}]"
|
||||
f"{f'({slot_key})' if slot_key else ''} "
|
||||
f"(Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})"
|
||||
)
|
||||
else:
|
||||
parent = getattr(current_resource, "parent", None)
|
||||
current_repr = repr(current_resource)
|
||||
current_len = len(current_resource) if isinstance(current_resource, str) else None
|
||||
logger.warning(
|
||||
f"⚠️ 物料 {unique_name} 跳过放置到 {wh_name}[{idx}]"
|
||||
f"{f'({slot_key})' if slot_key else ''}:目标库位已有 "
|
||||
f"{type(current_resource).__name__}"
|
||||
f"(value={current_repr}, len={current_len})"
|
||||
f"(name={getattr(current_resource, 'name', None)}, "
|
||||
f"parent={getattr(parent, 'name', None)}, "
|
||||
f"uuid={getattr(current_resource, 'unilabos_uuid', None)})"
|
||||
)
|
||||
else:
|
||||
logger.warning(f"❌ 物料 {unique_name} 的索引 {idx} 超出仓库 {wh_name} 容量 {warehouse.capacity}")
|
||||
else:
|
||||
|
||||
@@ -45,7 +45,6 @@ from unilabos.resources.graphio import (
|
||||
)
|
||||
from unilabos.resources.plr_additional_res_reg import register
|
||||
from unilabos.ros.msgs.message_converter import (
|
||||
String,
|
||||
convert_to_ros_msg,
|
||||
convert_from_ros_msg_with_mapping,
|
||||
convert_to_ros_msg_with_mapping,
|
||||
@@ -251,8 +250,7 @@ class PropertyPublisher:
|
||||
):
|
||||
self.node = node
|
||||
self.name = name
|
||||
self.msg_type = self._normalize_msg_type(msg_type)
|
||||
self.original_msg_type = msg_type
|
||||
self.msg_type = msg_type
|
||||
self.get_method = get_method
|
||||
self.timer_period = initial_period
|
||||
self.print_publish = print_publish
|
||||
@@ -260,36 +258,16 @@ class PropertyPublisher:
|
||||
|
||||
self._value = None
|
||||
try:
|
||||
self.publisher_ = node.create_publisher(self.msg_type, f"{name}", qos)
|
||||
self.publisher_ = node.create_publisher(msg_type, f"{name}", qos)
|
||||
except Exception as e:
|
||||
self.node.lab_logger().error(
|
||||
f"StatusError, DeviceId: {self.node.device_id} 创建发布者 {name} 失败,"
|
||||
f"可能由于注册表有误,类型: {msg_type},错误: {e}"
|
||||
f"StatusError, DeviceId: {self.node.device_id} 创建发布者 {name} 失败,可能由于注册表有误,类型: {msg_type},错误: {e}"
|
||||
)
|
||||
self.msg_type = String
|
||||
try:
|
||||
self.publisher_ = node.create_publisher(self.msg_type, f"{name}", qos)
|
||||
self.node.lab_logger().warning(
|
||||
f"属性 {name} 的发布类型已降级为 String,原始类型: {msg_type}"
|
||||
)
|
||||
except Exception:
|
||||
self.publisher_ = None
|
||||
self.timer = node.create_timer(self.timer_period, self.publish_property)
|
||||
self.__loop = ROS2DeviceNode.get_asyncio_loop()
|
||||
str_msg_type = str(self.msg_type)[8:-2]
|
||||
str_msg_type = str(msg_type)[8:-2]
|
||||
self.node.lab_logger().trace(f"发布属性: {name}, 类型: {str_msg_type}, 周期: {initial_period}秒, QoS: {qos}")
|
||||
|
||||
@staticmethod
|
||||
def _normalize_msg_type(msg_type):
|
||||
if msg_type in (dict, list, tuple, set) or msg_type in ("dict", "list", "tuple", "set"):
|
||||
return String
|
||||
return msg_type
|
||||
|
||||
def _normalize_value(self, value):
|
||||
if self.msg_type is String and isinstance(value, (dict, list, tuple, set)):
|
||||
return json.dumps(value, ensure_ascii=False, cls=TypeEncoder)
|
||||
return value
|
||||
|
||||
def get_property(self):
|
||||
if asyncio.iscoroutinefunction(self.get_method):
|
||||
# 如果是异步函数,运行事件循环并等待结果
|
||||
@@ -324,16 +302,12 @@ class PropertyPublisher:
|
||||
pass
|
||||
# self.node.lab_logger().trace(f"【.publish_property】发布 {self.msg_type}: {value}")
|
||||
if value is not None:
|
||||
if self.publisher_ is None:
|
||||
return
|
||||
value = self._normalize_value(value)
|
||||
msg = convert_to_ros_msg(self.msg_type, value)
|
||||
self.publisher_.publish(msg)
|
||||
# self.node.lab_logger().trace(f"【.publish_property】属性 {self.name} 发布成功")
|
||||
except Exception as e:
|
||||
topic = getattr(self.publisher_, "topic", self.name)
|
||||
self.node.lab_logger().error(
|
||||
f"【.publish_property】发布属性 {topic} 出错: {str(e)}\n{traceback.format_exc()}"
|
||||
f"【.publish_property】发布属性 {self.publisher_.topic} 出错: {str(e)}\n{traceback.format_exc()}"
|
||||
)
|
||||
|
||||
def change_frequency(self, period):
|
||||
|
||||
@@ -1691,9 +1691,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
else:
|
||||
self.lab_logger().warning("⚠️ 收到无效的Pong响应(缺少ping_id)")
|
||||
|
||||
def notify_resource_tree_update(
|
||||
self, device_id: str, action: str, resource_uuid_list: List[str]
|
||||
) -> Optional[bool]:
|
||||
def notify_resource_tree_update(self, device_id: str, action: str, resource_uuid_list: List[str]) -> bool:
|
||||
"""
|
||||
通知设备节点更新资源树
|
||||
|
||||
@@ -1703,14 +1701,13 @@ class HostNode(BaseROS2DeviceNode):
|
||||
resource_uuid_list: 资源UUIDs
|
||||
|
||||
Returns:
|
||||
True if the update completed, False if it failed, None if it was intentionally skipped.
|
||||
bool: 操作是否成功
|
||||
"""
|
||||
try:
|
||||
# 检查设备是否存在
|
||||
if device_id not in self.devices_names:
|
||||
self.lab_logger().info(
|
||||
f"[Host Node-Resource] 在线增加设备暂不支持,跳过设备 {device_id} 的资源树 {action} 更新"
|
||||
)
|
||||
return None
|
||||
self.lab_logger().error(f"[Host Node-Resource] Device {device_id} not found in devices_names")
|
||||
return False
|
||||
|
||||
namespace = self.devices_names[device_id]
|
||||
device_key = f"{namespace}/{device_id}"
|
||||
|
||||
@@ -47,10 +47,7 @@ def _has_uv() -> bool:
|
||||
|
||||
def _install_command(installer: str, package: str, upgrade: bool, is_chinese: bool) -> List[str]:
|
||||
if installer == "uv":
|
||||
# uv >= 0.5 默认要求虚拟环境,对 conda env 会报 "No virtual environment found"。
|
||||
# 显式 --python sys.executable 让 uv 把当前解释器(conda/venv/system 都行)
|
||||
# 视为目标环境,绕开 venv 检测。
|
||||
cmd = ["uv", "pip", "install", "--python", sys.executable]
|
||||
cmd = ["uv", "pip", "install"]
|
||||
if upgrade:
|
||||
cmd.append("--upgrade")
|
||||
cmd.append(package)
|
||||
@@ -92,11 +89,7 @@ def _print_manual_git_install_hint(requirement: str) -> None:
|
||||
return
|
||||
|
||||
repo_dir = _repo_dir_name(git_url)
|
||||
install_cmd = (
|
||||
f'uv pip install --python "{sys.executable}" -e .'
|
||||
if _has_uv()
|
||||
else f"{sys.executable} -m pip install -e ."
|
||||
)
|
||||
install_cmd = "uv pip install -e ." if _has_uv() else f"{sys.executable} -m pip install -e ."
|
||||
if _is_chinese_locale() and not _has_uv():
|
||||
install_cmd += " -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"
|
||||
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
<?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
|
||||
<package format="3">
|
||||
<name>unilabos_msgs</name>
|
||||
<version>0.11.3</version>
|
||||
<version>0.11.1</version>
|
||||
<description>ROS2 Messages package for unilabos devices</description>
|
||||
<maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
|
||||
<maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>
|
||||
|
||||
Reference in New Issue
Block a user