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Uni-Lab-OS/unilabos/compile/dissolve_protocol.py
Junhan Chang edc1fe853b refactor: 深度精简4个协议编译器的装饰性日志 (-335行)
dissolve, pump, stir, adjustph: 移除emoji分隔线、步骤播报、
逐字段参数dump等纯装饰性log,保留错误/警告/关键决策日志。

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-25 13:44:29 +08:00

462 lines
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Python
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from functools import partial
import networkx as nx
import logging
from typing import List, Dict, Any, Union
from .utils.logger_util import debug_print, action_log
from .utils.unit_parser import parse_volume_input, parse_mass_input, parse_time_input, parse_temperature_input
from .utils.vessel_parser import get_vessel, find_solvent_vessel, find_connected_heatchill, find_connected_stirrer, find_solid_dispenser
from .pump_protocol import generate_pump_protocol_with_rinsing
logger = logging.getLogger(__name__)
# 创建进度日志动作
create_action_log = partial(action_log, prefix="[DISSOLVE]")
def generate_dissolve_protocol(
G: nx.DiGraph,
vessel: dict, # 🔧 修改:从字符串改为字典类型
# 🔧 修复按照checklist.md的DissolveProtocol参数
solvent: str = "",
volume: Union[str, float] = 0.0,
amount: str = "",
temp: Union[str, float] = 25.0,
time: Union[str, float] = 0.0,
stir_speed: float = 300.0,
# 🔧 关键修复:添加缺失的参数,防止"unexpected keyword argument"错误
mass: Union[str, float] = 0.0, # 这个参数在action文件中存在必须包含
mol: str = "", # 这个参数在action文件中存在必须包含
reagent: str = "", # 这个参数在action文件中存在必须包含
event: str = "", # 这个参数在action文件中存在必须包含
**kwargs # 🔧 关键接受所有其他参数防止unexpected keyword错误
) -> List[Dict[str, Any]]:
"""
生成溶解操作的协议序列 - 增强版
🔧 修复要点:
1. 修改vessel参数类型为dict并提取vessel_id
2. 添加action文件中的所有参数mass, mol, reagent, event
3. 使用 **kwargs 接受所有额外参数,防止 unexpected keyword argument 错误
4. 支持固体溶解和液体溶解两种模式
5. 添加详细的体积运算逻辑
支持两种溶解模式:
1. 液体溶解:指定 solvent + volume使用pump protocol转移溶剂
2. 固体溶解:指定 mass/mol + reagent使用固体加样器添加固体试剂
支持所有XDL参数和单位
- volume: "10 mL", "?" 或数值
- mass: "2.9 g", "?" 或数值
- temp: "60 °C", "room temperature", "?" 或数值
- time: "30 min", "1 h", "?" 或数值
- mol: "0.12 mol", "16.2 mmol"
"""
# 从字典中提取容器ID
vessel_id, vessel_data = get_vessel(vessel)
debug_print(f"溶解协议: vessel={vessel_id}, solvent='{solvent}', volume={volume}, "
f"mass={mass}, temp={temp}, time={time}")
action_sequence = []
if not vessel_id:
raise ValueError("vessel 参数不能为空")
if vessel_id not in G.nodes():
raise ValueError(f"容器 '{vessel_id}' 不存在于系统中")
# 记录溶解前的容器状态
original_liquid_volume = 0.0
if "data" in vessel and "liquid_volume" in vessel["data"]:
current_volume = vessel["data"]["liquid_volume"]
if isinstance(current_volume, list) and len(current_volume) > 0:
original_liquid_volume = current_volume[0]
elif isinstance(current_volume, (int, float)):
original_liquid_volume = current_volume
# === 参数解析 ===
final_volume = parse_volume_input(volume)
final_mass = parse_mass_input(mass)
final_temp = parse_temperature_input(temp)
final_time = parse_time_input(time)
debug_print(f"参数解析: vol={final_volume}mL, mass={final_mass}g, temp={final_temp}°C, time={final_time}s")
# === 判断溶解类型 ===
# 判断是固体溶解还是液体溶解
is_solid_dissolve = (final_mass > 0 or (mol and mol.strip() != "") or (reagent and reagent.strip() != ""))
is_liquid_dissolve = (final_volume > 0 and solvent and solvent.strip() != "")
if not is_solid_dissolve and not is_liquid_dissolve:
# 默认为液体溶解50mL
is_liquid_dissolve = True
final_volume = 50.0
if not solvent:
solvent = "water" # 默认溶剂
debug_print("未明确指定溶解参数默认为50mL水溶解")
dissolve_type = "固体溶解" if is_solid_dissolve else "液体溶解"
debug_print(f"溶解类型: {dissolve_type}")
action_sequence.append(create_action_log(f"溶解类型: {dissolve_type}", "📋"))
# === 查找设备 ===
heatchill_id = find_connected_heatchill(G, vessel_id)
stirrer_id = find_connected_stirrer(G, vessel_id)
# 优先使用加热搅拌器,否则使用独立搅拌器
stir_device_id = heatchill_id or stirrer_id
debug_print(f"设备: heatchill='{heatchill_id}', stirrer='{stirrer_id}'")
if not stir_device_id:
action_sequence.append(create_action_log("未找到搅拌设备,将跳过搅拌", "⚠️"))
# === 执行溶解流程 ===
try:
# 启动加热搅拌(如果需要)
if stir_device_id and (final_temp > 25.0 or final_time > 0 or stir_speed > 0):
if heatchill_id and (final_temp > 25.0 or final_time > 0):
# 使用加热搅拌器
heatchill_action = {
"device_id": heatchill_id,
"action_name": "heat_chill_start",
"action_kwargs": {
"vessel": {"id": vessel_id},
"temp": final_temp,
"purpose": f"溶解准备 - {event}" if event else "溶解准备"
}
}
action_sequence.append(heatchill_action)
# 等待温度稳定
if final_temp > 25.0:
wait_time = min(60, abs(final_temp - 25.0) * 1.5)
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": wait_time}
})
elif stirrer_id:
# 使用独立搅拌器
stir_action = {
"device_id": stirrer_id,
"action_name": "start_stir",
"action_kwargs": {
"vessel": {"id": vessel_id},
"stir_speed": stir_speed,
"purpose": f"溶解搅拌 - {event}" if event else "溶解搅拌"
}
}
action_sequence.append(stir_action)
# 等待搅拌稳定
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5}
})
if is_solid_dissolve:
# === 固体溶解路径 ===
solid_dispenser = find_solid_dispenser(G)
if solid_dispenser:
# 固体加样
add_kwargs = {
"vessel": {"id": vessel_id},
"reagent": reagent or amount or "solid reagent",
"purpose": f"溶解固体试剂 - {event}" if event else "溶解固体试剂",
"event": event
}
if final_mass > 0:
add_kwargs["mass"] = str(final_mass)
if mol and mol.strip():
add_kwargs["mol"] = mol
action_sequence.append({
"device_id": solid_dispenser,
"action_name": "add_solid",
"action_kwargs": add_kwargs
})
# 固体溶解体积运算 - 固体本身不会显著增加体积
else:
debug_print("未找到固体加样器,跳过固体添加")
action_sequence.append(create_action_log("未找到固体加样器,无法添加固体", ""))
elif is_liquid_dissolve:
# === 液体溶解路径 ===
try:
solvent_vessel = find_solvent_vessel(G, solvent)
except ValueError as e:
debug_print(f"溶剂容器查找失败: {str(e)},跳过溶剂添加")
action_sequence.append(create_action_log(f"溶剂容器查找失败: {str(e)}", ""))
solvent_vessel = None
if solvent_vessel:
# 计算流速 - 溶解时通常用较慢的速度,避免飞溅
flowrate = 1.0 # 较慢的注入速度
transfer_flowrate = 0.5 # 较慢的转移速度
# 调用pump protocol
pump_actions = generate_pump_protocol_with_rinsing(
G=G,
from_vessel=solvent_vessel,
to_vessel=vessel_id,
volume=final_volume,
amount=amount,
time=0.0, # 不在pump level控制时间
viscous=False,
rinsing_solvent="",
rinsing_volume=0.0,
rinsing_repeats=0,
solid=False,
flowrate=flowrate,
transfer_flowrate=transfer_flowrate,
rate_spec="",
event=event,
through="",
**kwargs
)
action_sequence.extend(pump_actions)
# 液体溶解体积运算 - 添加溶剂后更新容器体积
# 确保vessel有data字段
if "data" not in vessel:
vessel["data"] = {}
if "liquid_volume" in vessel["data"]:
current_volume = vessel["data"]["liquid_volume"]
if isinstance(current_volume, list):
if len(current_volume) > 0:
vessel["data"]["liquid_volume"][0] += final_volume
else:
vessel["data"]["liquid_volume"] = [final_volume]
elif isinstance(current_volume, (int, float)):
vessel["data"]["liquid_volume"] += final_volume
else:
vessel["data"]["liquid_volume"] = final_volume
else:
vessel["data"]["liquid_volume"] = final_volume
# 🔧 同时更新图中的容器数据
if vessel_id in G.nodes():
if 'data' not in G.nodes[vessel_id]:
G.nodes[vessel_id]['data'] = {}
vessel_node_data = G.nodes[vessel_id]['data']
current_node_volume = vessel_node_data.get('liquid_volume', 0.0)
if isinstance(current_node_volume, list):
if len(current_node_volume) > 0:
G.nodes[vessel_id]['data']['liquid_volume'][0] += final_volume
else:
G.nodes[vessel_id]['data']['liquid_volume'] = [final_volume]
else:
G.nodes[vessel_id]['data']['liquid_volume'] = current_node_volume + final_volume
# 溶剂添加后等待
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": 5}
})
# 等待溶解完成
if final_time > 0:
wait_minutes = final_time / 60
if heatchill_id:
# 使用定时加热搅拌
dissolve_action = {
"device_id": heatchill_id,
"action_name": "heat_chill",
"action_kwargs": {
"vessel": {"id": vessel_id},
"temp": final_temp,
"time": final_time,
"stir": True,
"stir_speed": stir_speed,
"purpose": f"溶解等待 - {event}" if event else "溶解等待"
}
}
action_sequence.append(dissolve_action)
elif stirrer_id:
# 使用定时搅拌
stir_action = {
"device_id": stirrer_id,
"action_name": "stir",
"action_kwargs": {
"vessel": {"id": vessel_id},
"stir_time": final_time,
"stir_speed": stir_speed,
"settling_time": 0,
"purpose": f"溶解搅拌 - {event}" if event else "溶解搅拌"
}
}
action_sequence.append(stir_action)
else:
# 简单等待
action_sequence.append({
"action_name": "wait",
"action_kwargs": {"time": final_time}
})
# 步骤5.5: 停止加热搅拌(如果需要)
if heatchill_id and final_time == 0 and final_temp > 25.0:
stop_action = {
"device_id": heatchill_id,
"action_name": "heat_chill_stop",
"action_kwargs": {
"vessel": {"id": vessel_id},
}
}
action_sequence.append(stop_action)
except Exception as e:
debug_print(f"溶解流程执行失败: {str(e)}")
action_sequence.append(create_action_log(f"溶解流程失败: {str(e)}", ""))
# 添加错误日志
action_sequence.append({
"device_id": "system",
"action_name": "log_message",
"action_kwargs": {
"message": f"溶解失败: {str(e)}"
}
})
# 🔧 新增:溶解完成后的状态报告
final_liquid_volume = 0.0
if "data" in vessel and "liquid_volume" in vessel["data"]:
current_volume = vessel["data"]["liquid_volume"]
if isinstance(current_volume, list) and len(current_volume) > 0:
final_liquid_volume = current_volume[0]
elif isinstance(current_volume, (int, float)):
final_liquid_volume = current_volume
# === 最终结果 ===
debug_print(f"溶解协议完成: {vessel_id}, 类型={dissolve_type}, "
f"动作数={len(action_sequence)}, 体积={original_liquid_volume:.2f}{final_liquid_volume:.2f}mL")
# 添加完成日志
summary_msg = f"溶解协议完成: {vessel_id}"
if is_liquid_dissolve:
summary_msg += f" (使用 {final_volume}mL {solvent})"
if is_solid_dissolve:
summary_msg += f" (溶解 {final_mass}g {reagent})"
action_sequence.append(create_action_log(summary_msg, ""))
return action_sequence
# === 便捷函数 ===
# 🔧 修改便捷函数的参数类型
def dissolve_solid_by_mass(G: nx.DiGraph, vessel: dict, reagent: str, mass: Union[str, float],
temp: Union[str, float] = 25.0, time: Union[str, float] = "10 min") -> List[Dict[str, Any]]:
"""按质量溶解固体"""
vessel_id = vessel["id"]
debug_print(f"快速固体溶解: {reagent} ({mass}) → {vessel_id}")
return generate_dissolve_protocol(
G, vessel,
mass=mass,
reagent=reagent,
temp=temp,
time=time
)
def dissolve_solid_by_moles(G: nx.DiGraph, vessel: dict, reagent: str, mol: str,
temp: Union[str, float] = 25.0, time: Union[str, float] = "10 min") -> List[Dict[str, Any]]:
"""按摩尔数溶解固体"""
vessel_id = vessel["id"]
debug_print(f"按摩尔数溶解固体: {reagent} ({mol}) → {vessel_id}")
return generate_dissolve_protocol(
G, vessel,
mol=mol,
reagent=reagent,
temp=temp,
time=time
)
def dissolve_with_solvent(G: nx.DiGraph, vessel: dict, solvent: str, volume: Union[str, float],
temp: Union[str, float] = 25.0, time: Union[str, float] = "5 min") -> List[Dict[str, Any]]:
"""用溶剂溶解"""
vessel_id = vessel["id"]
debug_print(f"溶剂溶解: {solvent} ({volume}) → {vessel_id}")
return generate_dissolve_protocol(
G, vessel,
solvent=solvent,
volume=volume,
temp=temp,
time=time
)
def dissolve_at_room_temp(G: nx.DiGraph, vessel: dict, solvent: str, volume: Union[str, float]) -> List[Dict[str, Any]]:
"""室温溶解"""
vessel_id = vessel["id"]
debug_print(f"室温溶解: {solvent} ({volume}) → {vessel_id}")
return generate_dissolve_protocol(
G, vessel,
solvent=solvent,
volume=volume,
temp="room temperature",
time="5 min"
)
def dissolve_with_heating(G: nx.DiGraph, vessel: dict, solvent: str, volume: Union[str, float],
temp: Union[str, float] = "60 °C", time: Union[str, float] = "15 min") -> List[Dict[str, Any]]:
"""加热溶解"""
vessel_id = vessel["id"]
debug_print(f"加热溶解: {solvent} ({volume}) → {vessel_id} @ {temp}")
return generate_dissolve_protocol(
G, vessel,
solvent=solvent,
volume=volume,
temp=temp,
time=time
)
# 测试函数
def test_dissolve_protocol():
"""测试溶解协议的各种参数解析"""
# 测试体积解析
volumes = ["10 mL", "?", 10.0, "1 L", "500 μL"]
for vol in volumes:
result = parse_volume_input(vol)
debug_print(f"体积解析: {vol}{result}mL")
# 测试质量解析
masses = ["2.9 g", "?", 2.5, "500 mg"]
for mass in masses:
result = parse_mass_input(mass)
debug_print(f"质量解析: {mass}{result}g")
# 测试温度解析
temps = ["60 °C", "room temperature", "?", 25.0, "reflux"]
for temp in temps:
result = parse_temperature_input(temp)
debug_print(f"温度解析: {temp}{result}°C")
# 测试时间解析
times = ["30 min", "1 h", "?", 60.0]
for time in times:
result = parse_time_input(time)
debug_print(f"时间解析: {time}{result}s")
debug_print("测试完成")
if __name__ == "__main__":
test_dissolve_protocol()