mirror of
https://github.com/deepmodeling/Uni-Lab-OS
synced 2026-03-24 18:09:20 +00:00
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9 Commits
ee6307a568
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dependabot
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699a0b3ce7 | ||
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cf3a20ae79 |
@@ -3,7 +3,7 @@
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package:
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name: unilabos
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version: 0.10.17
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version: 0.10.18
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source:
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path: ../../unilabos
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@@ -46,13 +46,15 @@ requirements:
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- jinja2
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- requests
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- uvicorn
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- opcua # [not osx]
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- if: not osx
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then:
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- opcua
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- pyserial
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- pandas
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- pymodbus
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- matplotlib
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- pylibftdi
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- uni-lab::unilabos-env ==0.10.17
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- uni-lab::unilabos-env ==0.10.18
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about:
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repository: https://github.com/deepmodeling/Uni-Lab-OS
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@@ -2,7 +2,7 @@
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package:
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name: unilabos-env
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version: 0.10.17
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version: 0.10.18
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build:
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noarch: generic
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@@ -3,7 +3,7 @@
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package:
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name: unilabos-full
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version: 0.10.17
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version: 0.10.18
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build:
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noarch: generic
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@@ -11,7 +11,7 @@ build:
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requirements:
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run:
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# Base unilabos package (includes unilabos-env)
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- uni-lab::unilabos ==0.10.17
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- uni-lab::unilabos ==0.10.18
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# Documentation tools
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- sphinx
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- sphinx_rtd_theme
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2
.github/workflows/conda-pack-build.yml
vendored
2
.github/workflows/conda-pack-build.yml
vendored
@@ -312,7 +312,7 @@ jobs:
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- name: Upload distribution package
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if: steps.should_build.outputs.should_build == 'true'
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uses: actions/upload-artifact@v6
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uses: actions/upload-artifact@v7
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with:
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name: unilab-pack-${{ matrix.platform }}-${{ github.event.inputs.branch }}
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path: dist-package/
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2
.github/workflows/multi-platform-build.yml
vendored
2
.github/workflows/multi-platform-build.yml
vendored
@@ -149,7 +149,7 @@ jobs:
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- name: Upload conda package artifacts
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if: steps.should_build.outputs.should_build == 'true'
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uses: actions/upload-artifact@v6
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uses: actions/upload-artifact@v7
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with:
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name: conda-package-${{ matrix.platform }}
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path: conda-packages-temp
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2
.github/workflows/unilabos-conda-build.yml
vendored
2
.github/workflows/unilabos-conda-build.yml
vendored
@@ -195,7 +195,7 @@ jobs:
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- name: Upload conda package artifacts
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if: steps.should_build.outputs.should_build == 'true'
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uses: actions/upload-artifact@v6
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uses: actions/upload-artifact@v7
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with:
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name: conda-package-unilabos-${{ matrix.platform }}
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path: conda-packages-temp
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@@ -1,6 +1,6 @@
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package:
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name: ros-humble-unilabos-msgs
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version: 0.10.17
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version: 0.10.18
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source:
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path: ../../unilabos_msgs
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target_directory: src
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@@ -1,6 +1,6 @@
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package:
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name: unilabos
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version: "0.10.17"
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version: "0.10.18"
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source:
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path: ../..
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2
setup.py
2
setup.py
@@ -4,7 +4,7 @@ package_name = 'unilabos'
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setup(
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name=package_name,
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version='0.10.17',
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version='0.10.18',
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packages=find_packages(),
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include_package_data=True,
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install_requires=['setuptools'],
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@@ -1 +1 @@
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__version__ = "0.10.17"
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__version__ = "0.10.18"
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@@ -1184,6 +1184,11 @@ class QueueProcessor:
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logger.debug(f"[QueueProcessor] Sending busy status for {len(queued_jobs)} queued jobs")
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for job_info in queued_jobs:
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# 快照可能已过期:在遍历过程中 end_job() 可能已将此 job 移至 READY,
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# 此时不应再发送 busy/need_more,否则会覆盖已发出的 free=True 通知
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if job_info.status != JobStatus.QUEUE:
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continue
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message = {
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"action": "report_action_state",
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"data": {
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@@ -21,7 +21,7 @@ from pylabrobot.resources import (
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ResourceHolder,
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Lid,
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Trash,
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Tip,
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Tip, TubeRack,
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)
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from typing_extensions import TypedDict
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@@ -696,10 +696,13 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
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如果 liquid_names 和 volumes 为空,但 plate 和 well_names 不为空,直接返回 plate 和 wells。
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"""
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assert issubclass(plate.__class__, Plate), "plate must be a Plate"
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plate: Plate = cast(Plate, cast(Resource, plate))
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assert issubclass(plate.__class__, Plate) or issubclass(plate.__class__, TubeRack) , f"plate must be a Plate, now: {type(plate)}"
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plate: Union[Plate, TubeRack]
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# 根据 well_names 获取对应的 Well 对象
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wells = [plate.get_well(name) for name in well_names]
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if issubclass(plate.__class__, Plate):
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wells = [plate.get_well(name) for name in well_names]
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elif issubclass(plate.__class__, TubeRack):
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wells = [plate.get_tube(name) for name in well_names]
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res_volumes = []
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# 如果 liquid_names 和 volumes 都为空,直接返回
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@@ -91,7 +91,7 @@ class PRCXI9300Deck(Deck):
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"""
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def __init__(self, name: str, size_x: float, size_y: float, size_z: float, **kwargs):
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super().__init__(name, size_x, size_y, size_z)
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super().__init__(size_x, size_y, size_z, name)
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self.slots = [None] * 16 # PRCXI 9300/9320 最大有 16 个槽位
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self.slot_locations = [Coordinate(0, 0, 0)] * 16
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@@ -248,14 +248,15 @@ class PRCXI9300TipRack(TipRack):
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if ordered_items is not None:
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items = ordered_items
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elif ordering is not None:
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# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
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# 如果是字符串,说明这是位置名称,需要让 TipRack 自己创建 Tip 对象
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# 我们只传递位置信息(键),不传递值,使用 ordering 参数
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if ordering and isinstance(next(iter(ordering.values()), None), str):
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# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
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# 检查 ordering 中的值类型来决定如何处理:
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# - 字符串值(从 JSON 反序列化): 只用键创建 ordering_param
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# - None 值(从第二次往返序列化): 同样只用键创建 ordering_param
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# - 对象值(已经是实际的 Resource 对象): 直接作为 ordered_items 使用
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first_val = next(iter(ordering.values()), None) if ordering else None
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if not ordering or first_val is None or isinstance(first_val, str):
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# ordering 的值是字符串或 None,只使用键(位置信息)创建新的 OrderedDict
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# 传递 ordering 参数而不是 ordered_items,让 TipRack 自己创建 Tip 对象
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items = None
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# 使用 ordering 参数,只包含位置信息(键)
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ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
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else:
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# ordering 的值已经是对象,可以直接使用
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@@ -397,14 +398,15 @@ class PRCXI9300TubeRack(TubeRack):
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items_to_pass = ordered_items
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ordering_param = None
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elif ordering is not None:
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# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
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# 如果是字符串,说明这是位置名称,需要让 TubeRack 自己创建 Tube 对象
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# 我们只传递位置信息(键),不传递值,使用 ordering 参数
|
||||
if ordering and isinstance(next(iter(ordering.values()), None), str):
|
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# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
|
||||
# 检查 ordering 中的值类型来决定如何处理:
|
||||
# - 字符串值(从 JSON 反序列化): 只用键创建 ordering_param
|
||||
# - None 值(从第二次往返序列化): 同样只用键创建 ordering_param
|
||||
# - 对象值(已经是实际的 Resource 对象): 直接作为 ordered_items 使用
|
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first_val = next(iter(ordering.values()), None) if ordering else None
|
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if not ordering or first_val is None or isinstance(first_val, str):
|
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# ordering 的值是字符串或 None,只使用键(位置信息)创建新的 OrderedDict
|
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# 传递 ordering 参数而不是 ordered_items,让 TubeRack 自己创建 Tube 对象
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items_to_pass = None
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# 使用 ordering 参数,只包含位置信息(键)
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ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
|
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else:
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# ordering 的值已经是对象,可以直接使用
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@@ -89,6 +89,14 @@ class Registry:
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)
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test_latency_schema["description"] = "用于测试延迟的动作,返回延迟时间和时间差。"
|
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test_resource_method_info = host_node_enhanced_info.get("action_methods", {}).get("test_resource", {})
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test_resource_schema = self._generate_unilab_json_command_schema(
|
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test_resource_method_info.get("args", []),
|
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"test_resource",
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test_resource_method_info.get("return_annotation"),
|
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)
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test_resource_schema["description"] = "用于测试物料、设备和样本。"
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self.device_type_registry.update(
|
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{
|
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"host_node": {
|
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@@ -190,32 +198,7 @@ class Registry:
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"goal": {},
|
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"feedback": {},
|
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"result": {},
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"schema": {
|
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"description": "",
|
||||
"properties": {
|
||||
"feedback": {},
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"goal": {
|
||||
"properties": {
|
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"resource": ros_message_to_json_schema(Resource, "resource"),
|
||||
"resources": {
|
||||
"items": {
|
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"properties": ros_message_to_json_schema(
|
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Resource, "resources"
|
||||
),
|
||||
"type": "object",
|
||||
},
|
||||
"type": "array",
|
||||
},
|
||||
"device": {"type": "string"},
|
||||
"devices": {"items": {"type": "string"}, "type": "array"},
|
||||
},
|
||||
"type": "object",
|
||||
},
|
||||
"result": {},
|
||||
},
|
||||
"title": "test_resource",
|
||||
"type": "object",
|
||||
},
|
||||
"schema": test_resource_schema,
|
||||
"placeholder_keys": {
|
||||
"device": "unilabos_devices",
|
||||
"devices": "unilabos_devices",
|
||||
|
||||
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
File diff suppressed because one or more lines are too long
@@ -38,24 +38,52 @@ class LabSample(TypedDict):
|
||||
extra: Dict[str, Any]
|
||||
|
||||
|
||||
class ResourceDictPositionSizeType(TypedDict):
|
||||
depth: float
|
||||
width: float
|
||||
height: float
|
||||
|
||||
|
||||
class ResourceDictPositionSize(BaseModel):
|
||||
depth: float = Field(description="Depth", default=0.0) # z
|
||||
width: float = Field(description="Width", default=0.0) # x
|
||||
height: float = Field(description="Height", default=0.0) # y
|
||||
|
||||
|
||||
class ResourceDictPositionScaleType(TypedDict):
|
||||
x: float
|
||||
y: float
|
||||
z: float
|
||||
|
||||
|
||||
class ResourceDictPositionScale(BaseModel):
|
||||
x: float = Field(description="x scale", default=0.0)
|
||||
y: float = Field(description="y scale", default=0.0)
|
||||
z: float = Field(description="z scale", default=0.0)
|
||||
|
||||
|
||||
class ResourceDictPositionObjectType(TypedDict):
|
||||
x: float
|
||||
y: float
|
||||
z: float
|
||||
|
||||
|
||||
class ResourceDictPositionObject(BaseModel):
|
||||
x: float = Field(description="X coordinate", default=0.0)
|
||||
y: float = Field(description="Y coordinate", default=0.0)
|
||||
z: float = Field(description="Z coordinate", default=0.0)
|
||||
|
||||
|
||||
class ResourceDictPositionType(TypedDict):
|
||||
size: ResourceDictPositionSizeType
|
||||
scale: ResourceDictPositionScaleType
|
||||
layout: Literal["2d", "x-y", "z-y", "x-z"]
|
||||
position: ResourceDictPositionObjectType
|
||||
position3d: ResourceDictPositionObjectType
|
||||
rotation: ResourceDictPositionObjectType
|
||||
cross_section_type: Literal["rectangle", "circle", "rounded_rectangle"]
|
||||
|
||||
|
||||
class ResourceDictPosition(BaseModel):
|
||||
size: ResourceDictPositionSize = Field(description="Resource size", default_factory=ResourceDictPositionSize)
|
||||
scale: ResourceDictPositionScale = Field(description="Resource scale", default_factory=ResourceDictPositionScale)
|
||||
@@ -74,6 +102,24 @@ class ResourceDictPosition(BaseModel):
|
||||
)
|
||||
|
||||
|
||||
class ResourceDictType(TypedDict):
|
||||
id: str
|
||||
uuid: str
|
||||
name: str
|
||||
description: str
|
||||
resource_schema: Dict[str, Any]
|
||||
model: Dict[str, Any]
|
||||
icon: str
|
||||
parent_uuid: Optional[str]
|
||||
parent: Optional["ResourceDictType"]
|
||||
type: Union[Literal["device"], str]
|
||||
klass: str
|
||||
pose: ResourceDictPositionType
|
||||
config: Dict[str, Any]
|
||||
data: Dict[str, Any]
|
||||
extra: Dict[str, Any]
|
||||
|
||||
|
||||
# 统一的资源字典模型,parent 自动序列化为 parent_uuid,children 不序列化
|
||||
class ResourceDict(BaseModel):
|
||||
id: str = Field(description="Resource ID")
|
||||
|
||||
@@ -460,7 +460,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
|
||||
}
|
||||
res.response = json.dumps(final_response)
|
||||
# 如果driver自己就有assign的方法,那就使用driver自己的assign方法
|
||||
if hasattr(self.driver_instance, "create_resource"):
|
||||
if hasattr(self.driver_instance, "create_resource") and self.node_name != "host_node":
|
||||
create_resource_func = getattr(self.driver_instance, "create_resource")
|
||||
try:
|
||||
ret = create_resource_func(
|
||||
|
||||
@@ -35,7 +35,7 @@ from unilabos.resources.resource_tracker import (
|
||||
ResourceTreeInstance,
|
||||
RETURN_UNILABOS_SAMPLES,
|
||||
JSON_UNILABOS_PARAM,
|
||||
PARAM_SAMPLE_UUIDS,
|
||||
PARAM_SAMPLE_UUIDS, SampleUUIDsType, LabSample,
|
||||
)
|
||||
from unilabos.ros.initialize_device import initialize_device_from_dict
|
||||
from unilabos.ros.msgs.message_converter import (
|
||||
@@ -64,7 +64,8 @@ class DeviceActionStatus:
|
||||
|
||||
class TestResourceReturn(TypedDict):
|
||||
resources: List[List[ResourceDict]]
|
||||
devices: List[DeviceSlot]
|
||||
devices: List[Dict[str, Any]]
|
||||
unilabos_samples: List[LabSample]
|
||||
|
||||
|
||||
class TestLatencyReturn(TypedDict):
|
||||
@@ -1582,6 +1583,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
|
||||
def test_resource(
|
||||
self,
|
||||
sample_uuids: SampleUUIDsType,
|
||||
resource: ResourceSlot = None,
|
||||
resources: List[ResourceSlot] = None,
|
||||
device: DeviceSlot = None,
|
||||
@@ -1596,6 +1598,7 @@ class HostNode(BaseROS2DeviceNode):
|
||||
return {
|
||||
"resources": ResourceTreeSet.from_plr_resources([resource, *resources], known_newly_created=True).dump(),
|
||||
"devices": [device, *devices],
|
||||
"unilabos_samples": [LabSample(sample_uuid=sample_uuid, oss_path="", extra={"material_uuid": content} if isinstance(content, str) else content.serialize()) for sample_uuid, content in sample_uuids.items()]
|
||||
}
|
||||
|
||||
def handle_pong_response(self, pong_data: dict):
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
<?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
|
||||
<package format="3">
|
||||
<name>unilabos_msgs</name>
|
||||
<version>0.10.17</version>
|
||||
<version>0.10.18</version>
|
||||
<description>ROS2 Messages package for unilabos devices</description>
|
||||
<maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
|
||||
<maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>
|
||||
|
||||
Reference in New Issue
Block a user