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https://github.com/deepmodeling/Uni-Lab-OS
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dependabot
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b7d3e980a9 |
@@ -3,7 +3,7 @@
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package:
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name: unilabos
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version: 0.10.17
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version: 0.10.18
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source:
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path: ../../unilabos
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@@ -46,13 +46,15 @@ requirements:
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- jinja2
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- requests
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- uvicorn
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- opcua # [not osx]
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- if: not osx
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then:
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- opcua
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- pyserial
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- pandas
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- pymodbus
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- matplotlib
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- pylibftdi
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- uni-lab::unilabos-env ==0.10.17
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- uni-lab::unilabos-env ==0.10.18
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about:
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repository: https://github.com/deepmodeling/Uni-Lab-OS
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@@ -2,7 +2,7 @@
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package:
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name: unilabos-env
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version: 0.10.17
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version: 0.10.18
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build:
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noarch: generic
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@@ -3,7 +3,7 @@
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package:
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name: unilabos-full
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version: 0.10.17
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version: 0.10.18
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build:
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noarch: generic
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@@ -11,7 +11,7 @@ build:
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requirements:
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run:
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# Base unilabos package (includes unilabos-env)
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- uni-lab::unilabos ==0.10.17
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- uni-lab::unilabos ==0.10.18
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# Documentation tools
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- sphinx
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- sphinx_rtd_theme
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2
.github/workflows/conda-pack-build.yml
vendored
2
.github/workflows/conda-pack-build.yml
vendored
@@ -312,7 +312,7 @@ jobs:
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- name: Upload distribution package
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if: steps.should_build.outputs.should_build == 'true'
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uses: actions/upload-artifact@v6
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uses: actions/upload-artifact@v7
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with:
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name: unilab-pack-${{ matrix.platform }}-${{ github.event.inputs.branch }}
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path: dist-package/
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2
.github/workflows/multi-platform-build.yml
vendored
2
.github/workflows/multi-platform-build.yml
vendored
@@ -149,7 +149,7 @@ jobs:
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- name: Upload conda package artifacts
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if: steps.should_build.outputs.should_build == 'true'
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uses: actions/upload-artifact@v6
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uses: actions/upload-artifact@v7
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with:
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name: conda-package-${{ matrix.platform }}
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path: conda-packages-temp
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2
.github/workflows/unilabos-conda-build.yml
vendored
2
.github/workflows/unilabos-conda-build.yml
vendored
@@ -195,7 +195,7 @@ jobs:
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- name: Upload conda package artifacts
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if: steps.should_build.outputs.should_build == 'true'
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uses: actions/upload-artifact@v6
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uses: actions/upload-artifact@v7
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with:
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name: conda-package-unilabos-${{ matrix.platform }}
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path: conda-packages-temp
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@@ -1,6 +1,6 @@
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package:
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name: ros-humble-unilabos-msgs
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version: 0.10.17
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version: 0.10.18
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source:
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path: ../../unilabos_msgs
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target_directory: src
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@@ -1,6 +1,6 @@
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package:
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name: unilabos
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version: "0.10.17"
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version: "0.10.18"
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source:
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path: ../..
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2
setup.py
2
setup.py
@@ -4,7 +4,7 @@ package_name = 'unilabos'
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setup(
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name=package_name,
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version='0.10.17',
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version='0.10.18',
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packages=find_packages(),
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include_package_data=True,
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install_requires=['setuptools'],
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@@ -1 +1 @@
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__version__ = "0.10.17"
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__version__ = "0.10.18"
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@@ -1184,6 +1184,11 @@ class QueueProcessor:
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logger.debug(f"[QueueProcessor] Sending busy status for {len(queued_jobs)} queued jobs")
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for job_info in queued_jobs:
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# 快照可能已过期:在遍历过程中 end_job() 可能已将此 job 移至 READY,
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# 此时不应再发送 busy/need_more,否则会覆盖已发出的 free=True 通知
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if job_info.status != JobStatus.QUEUE:
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continue
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message = {
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"action": "report_action_state",
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"data": {
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@@ -21,7 +21,7 @@ from pylabrobot.resources import (
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ResourceHolder,
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Lid,
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Trash,
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Tip,
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Tip, TubeRack,
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)
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from typing_extensions import TypedDict
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@@ -696,10 +696,13 @@ class LiquidHandlerAbstract(LiquidHandlerMiddleware):
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如果 liquid_names 和 volumes 为空,但 plate 和 well_names 不为空,直接返回 plate 和 wells。
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"""
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assert issubclass(plate.__class__, Plate), "plate must be a Plate"
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plate: Plate = cast(Plate, cast(Resource, plate))
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assert issubclass(plate.__class__, Plate) or issubclass(plate.__class__, TubeRack) , f"plate must be a Plate, now: {type(plate)}"
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plate: Union[Plate, TubeRack]
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# 根据 well_names 获取对应的 Well 对象
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wells = [plate.get_well(name) for name in well_names]
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if issubclass(plate.__class__, Plate):
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wells = [plate.get_well(name) for name in well_names]
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elif issubclass(plate.__class__, TubeRack):
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wells = [plate.get_tube(name) for name in well_names]
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res_volumes = []
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# 如果 liquid_names 和 volumes 都为空,直接返回
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@@ -91,7 +91,7 @@ class PRCXI9300Deck(Deck):
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"""
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def __init__(self, name: str, size_x: float, size_y: float, size_z: float, **kwargs):
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super().__init__(name, size_x, size_y, size_z)
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super().__init__(size_x, size_y, size_z, name)
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self.slots = [None] * 16 # PRCXI 9300/9320 最大有 16 个槽位
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self.slot_locations = [Coordinate(0, 0, 0)] * 16
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@@ -248,14 +248,15 @@ class PRCXI9300TipRack(TipRack):
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if ordered_items is not None:
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items = ordered_items
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elif ordering is not None:
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# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
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# 如果是字符串,说明这是位置名称,需要让 TipRack 自己创建 Tip 对象
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# 我们只传递位置信息(键),不传递值,使用 ordering 参数
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if ordering and isinstance(next(iter(ordering.values()), None), str):
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# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
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# 检查 ordering 中的值类型来决定如何处理:
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# - 字符串值(从 JSON 反序列化): 只用键创建 ordering_param
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# - None 值(从第二次往返序列化): 同样只用键创建 ordering_param
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# - 对象值(已经是实际的 Resource 对象): 直接作为 ordered_items 使用
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first_val = next(iter(ordering.values()), None) if ordering else None
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if not ordering or first_val is None or isinstance(first_val, str):
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# ordering 的值是字符串或 None,只使用键(位置信息)创建新的 OrderedDict
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# 传递 ordering 参数而不是 ordered_items,让 TipRack 自己创建 Tip 对象
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items = None
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# 使用 ordering 参数,只包含位置信息(键)
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ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
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else:
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# ordering 的值已经是对象,可以直接使用
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@@ -397,14 +398,15 @@ class PRCXI9300TubeRack(TubeRack):
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items_to_pass = ordered_items
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ordering_param = None
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elif ordering is not None:
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# 检查 ordering 中的值是否是字符串(从 JSON 反序列化时的情况)
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# 如果是字符串,说明这是位置名称,需要让 TubeRack 自己创建 Tube 对象
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# 我们只传递位置信息(键),不传递值,使用 ordering 参数
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if ordering and isinstance(next(iter(ordering.values()), None), str):
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# ordering 的值是字符串,只使用键(位置信息)创建新的 OrderedDict
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# 检查 ordering 中的值类型来决定如何处理:
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# - 字符串值(从 JSON 反序列化): 只用键创建 ordering_param
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# - None 值(从第二次往返序列化): 同样只用键创建 ordering_param
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# - 对象值(已经是实际的 Resource 对象): 直接作为 ordered_items 使用
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first_val = next(iter(ordering.values()), None) if ordering else None
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if not ordering or first_val is None or isinstance(first_val, str):
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# ordering 的值是字符串或 None,只使用键(位置信息)创建新的 OrderedDict
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# 传递 ordering 参数而不是 ordered_items,让 TubeRack 自己创建 Tube 对象
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items_to_pass = None
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# 使用 ordering 参数,只包含位置信息(键)
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ordering_param = collections.OrderedDict((k, None) for k in ordering.keys())
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else:
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# ordering 的值已经是对象,可以直接使用
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@@ -460,7 +460,7 @@ class BaseROS2DeviceNode(Node, Generic[T]):
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}
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res.response = json.dumps(final_response)
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# 如果driver自己就有assign的方法,那就使用driver自己的assign方法
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if hasattr(self.driver_instance, "create_resource"):
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if hasattr(self.driver_instance, "create_resource") and self.node_name != "host_node":
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create_resource_func = getattr(self.driver_instance, "create_resource")
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try:
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ret = create_resource_func(
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@@ -2,7 +2,7 @@
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<?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
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<package format="3">
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<name>unilabos_msgs</name>
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<version>0.10.17</version>
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<version>0.10.18</version>
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<description>ROS2 Messages package for unilabos devices</description>
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<maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
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<maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>
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