完成mix，liquid_hight，touch_tip，delay等参数的传递

unilabos/devices/liquid_handling/prcxi/prcxi.py

@@ -103,7 +103,7 @@ class PRCXI9300Deck(Deck):
 
     def __init__(self, name: str, size_x: float, size_y: float, size_z: float,
                  sites: Optional[List[Dict[str, Any]]] = None, **kwargs):
-        super().__init__(size_x, size_y, size_z, name)
+        super().__init__(name, size_x, size_y, size_z)
         if sites is not None:
             self.sites: List[Dict[str, Any]] = [dict(s) for s in sites]
         else:
@@ -120,6 +120,7 @@ class PRCXI9300Deck(Deck):
         self._ordering = collections.OrderedDict(
             (site["label"], None) for site in self.sites
         )
+        self.root = self.get_root()
 
     def _get_site_location(self, idx: int) -> Coordinate:
         pos = self.sites[idx]["position"]
@@ -162,7 +163,10 @@ class PRCXI9300Deck(Deck):
             raise ValueError(f"No available site on deck '{self.name}' for resource '{resource.name}'")
 
         if not reassign and self._get_site_resource(idx) is not None:
-            raise ValueError(f"Site {idx} ('{self.sites[idx]['label']}') is already occupied")
+            existing = self.root.get_resource(resource.name)
+            if existing is not resource and existing.parent is not None:
+                existing.parent.unassign_child_resource(existing)
+
 
         loc = self._get_site_location(idx)
         super().assign_child_resource(resource, location=loc, reassign=reassign)
@@ -794,6 +798,7 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
         touch_tip: bool = False,
         liquid_height: Optional[List[Optional[float]]] = None,
         blow_out_air_volume: Optional[List[Optional[float]]] = None,
+        blow_out_air_volume_before: Optional[List[Optional[float]]] = None,
         spread: Literal["wide", "tight", "custom"] = "wide",
         is_96_well: bool = False,
         mix_stage: Optional[Literal["none", "before", "after", "both"]] = "none",
@@ -804,7 +809,9 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
         delays: Optional[List[int]] = None,
         none_keys: List[str] = [],
     ) -> TransferLiquidReturn:
-        return await super().transfer_liquid(
+        if self.step_mode:
+            await self.create_protocol(f"transfer_liquid{time.time()}")
+        res =  await super().transfer_liquid(
             sources,
             targets,
             tip_racks,
@@ -817,6 +824,7 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
             touch_tip=touch_tip,
             liquid_height=liquid_height,
             blow_out_air_volume=blow_out_air_volume,
+            blow_out_air_volume_before=blow_out_air_volume_before,
             spread=spread,
             is_96_well=is_96_well,
             mix_stage=mix_stage,
@@ -827,6 +835,9 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
             delays=delays,
             none_keys=none_keys,
         )
+        if self.step_mode:
+            await self.run_protocol()
+        return res
 
     async def custom_delay(self, seconds=0, msg=None):
         return await super().custom_delay(seconds, msg)
@@ -843,9 +854,10 @@ class PRCXI9300Handler(LiquidHandlerAbstract):
         offsets: Optional[Coordinate] = None,
         mix_rate: Optional[float] = None,
         none_keys: List[str] = [],
+        use_channels: Optional[List[int]] = [0],
     ):
         return await self._unilabos_backend.mix(
-            targets, mix_time, mix_vol, height_to_bottom, offsets, mix_rate, none_keys
+            targets, mix_time, mix_vol, height_to_bottom, offsets, mix_rate, none_keys, use_channels
         )
 
     def iter_tips(self, tip_racks: Sequence[TipRack]) -> Iterator[Resource]:
@@ -1274,9 +1286,15 @@ class PRCXI9300Backend(LiquidHandlerBackend):
         offsets: Optional[Coordinate] = None,
         mix_rate: Optional[float] = None,
         none_keys: List[str] = [],
+        use_channels: Optional[List[int]] = [0],
     ):
         """Mix liquid in the specified resources."""
-
+        if use_channels == [0]:
+            axis = "Left"
+        elif use_channels == [1]:
+            axis = "Right"
+        else:
+            raise ValueError("Invalid use channels: " + str(use_channels))
         plate_indexes = []
         for op in targets:
             deck = op.parent.parent.parent

unilabos/registry/devices/liquid_handler.yaml

@@ -4976,13 +4976,13 @@ liquid_handler.biomek:
             handler_key: tip_rack
             label: tip_rack
           output:
-          - data_key: liquid
+          - data_key: sources
             data_source: handle
             data_type: resource
             handler_key: sources_out
             label: sources
-          - data_key: liquid
-            data_source: executor
+          - data_key: targets
+            data_source: handle
             data_type: resource
             handler_key: targets_out
             label: targets
@@ -7656,6 +7656,43 @@ liquid_handler.prcxi:
           title: iter_tips参数
           type: object
         type: UniLabJsonCommand
+      auto-magnetic_action:
+        feedback: {}
+        goal: {}
+        goal_default:
+          height: null
+          is_wait: null
+          module_no: null
+          time: null
+        handles: {}
+        placeholder_keys: {}
+        result: {}
+        schema:
+          description: ''
+          properties:
+            feedback: {}
+            goal:
+              properties:
+                height:
+                  type: integer
+                is_wait:
+                  type: boolean
+                module_no:
+                  type: integer
+                time:
+                  type: integer
+              required:
+              - time
+              - module_no
+              - height
+              - is_wait
+              type: object
+            result: {}
+          required:
+          - goal
+          title: magnetic_action参数
+          type: object
+        type: UniLabJsonCommandAsync
       auto-move_to:
         feedback: {}
         goal: {}
@@ -7689,6 +7726,31 @@ liquid_handler.prcxi:
           title: move_to参数
           type: object
         type: UniLabJsonCommandAsync
+      auto-plr_pos_to_prcxi:
+        feedback: {}
+        goal: {}
+        goal_default:
+          resource: null
+        handles: {}
+        placeholder_keys: {}
+        result: {}
+        schema:
+          description: ''
+          properties:
+            feedback: {}
+            goal:
+              properties:
+                resource:
+                  type: object
+              required:
+              - resource
+              type: object
+            result: {}
+          required:
+          - goal
+          title: plr_pos_to_prcxi参数
+          type: object
+        type: UniLabJsonCommand
       auto-post_init:
         feedback: {}
         goal: {}
@@ -7809,6 +7871,47 @@ liquid_handler.prcxi:
           title: shaker_action参数
           type: object
         type: UniLabJsonCommandAsync
+      auto-shaking_incubation_action:
+        feedback: {}
+        goal: {}
+        goal_default:
+          amplitude: null
+          is_wait: null
+          module_no: null
+          temperature: null
+          time: null
+        handles: {}
+        placeholder_keys: {}
+        result: {}
+        schema:
+          description: ''
+          properties:
+            feedback: {}
+            goal:
+              properties:
+                amplitude:
+                  type: integer
+                is_wait:
+                  type: boolean
+                module_no:
+                  type: integer
+                temperature:
+                  type: integer
+                time:
+                  type: integer
+              required:
+              - time
+              - module_no
+              - amplitude
+              - is_wait
+              - temperature
+              type: object
+            result: {}
+          required:
+          - goal
+          title: shaking_incubation_action参数
+          type: object
+        type: UniLabJsonCommandAsync
       auto-touch_tip:
         feedback: {}
         goal: {}
@@ -10034,116 +10137,28 @@ liquid_handler.prcxi:
         type: Transfer
       transfer_liquid:
         feedback: {}
-        goal:
-          asp_flow_rates: asp_flow_rates
-          asp_vols: asp_vols
-          blow_out_air_volume: blow_out_air_volume
-          delays: delays
-          dis_flow_rates: dis_flow_rates
-          dis_vols: dis_vols
-          is_96_well: is_96_well
-          liquid_height: liquid_height
-          mix_liquid_height: mix_liquid_height
-          mix_rate: mix_rate
-          mix_stage: mix_stage
-          mix_times: mix_times
-          mix_vol: mix_vol
-          none_keys: none_keys
-          offsets: offsets
-          sources: sources
-          spread: spread
-          targets: targets
-          tip_racks: tip_racks
-          touch_tip: touch_tip
-          use_channels: use_channels
+        goal: {}
         goal_default:
-          asp_flow_rates:
-          - 0.0
-          asp_vols:
-          - 0.0
-          blow_out_air_volume:
-          - 0.0
-          delays:
-          - 0
-          dis_flow_rates:
-          - 0.0
-          dis_vols:
-          - 0.0
+          asp_flow_rates: null
+          asp_vols: null
+          blow_out_air_volume: null
+          blow_out_air_volume_before: null
+          delays: null
+          dis_flow_rates: null
+          dis_vols: null
           is_96_well: false
-          liquid_height:
-          - 0.0
-          mix_liquid_height: 0.0
-          mix_rate: 0
-          mix_stage: ''
-          mix_times: 0
-          mix_vol: 0
-          none_keys:
-          - ''
-          offsets:
-          - x: 0.0
-            y: 0.0
-            z: 0.0
-          sources:
-          - category: ''
-            children: []
-            config: ''
-            data: ''
-            id: ''
-            name: ''
-            parent: ''
-            pose:
-              orientation:
-                w: 1.0
-                x: 0.0
-                y: 0.0
-                z: 0.0
-              position:
-                x: 0.0
-                y: 0.0
-                z: 0.0
-            sample_id: ''
-            type: ''
-          spread: ''
-          targets:
-          - category: ''
-            children: []
-            config: ''
-            data: ''
-            id: ''
-            name: ''
-            parent: ''
-            pose:
-              orientation:
-                w: 1.0
-                x: 0.0
-                y: 0.0
-                z: 0.0
-              position:
-                x: 0.0
-                y: 0.0
-                z: 0.0
-            sample_id: ''
-            type: ''
-          tip_racks:
-          - category: ''
-            children: []
-            config: ''
-            data: ''
-            id: ''
-            name: ''
-            parent: ''
-            pose:
-              orientation:
-                w: 1.0
-                x: 0.0
-                y: 0.0
-                z: 0.0
-              position:
-                x: 0.0
-                y: 0.0
-                z: 0.0
-            sample_id: ''
-            type: ''
+          liquid_height: null
+          mix_liquid_height: null
+          mix_rate: null
+          mix_stage: none
+          mix_times: null
+          mix_vol: null
+          none_keys: []
+          offsets: null
+          sources: null
+          spread: wide
+          targets: null
+          tip_racks: null
           touch_tip: false
           use_channels:
           - 0
@@ -10159,7 +10174,7 @@ liquid_handler.prcxi:
             data_type: resource
             handler_key: targets_identifier
             label: 转移目标
-          - data_key: tip_rack
+          - data_key: tip_racks
             data_source: handle
             data_type: resource
             handler_key: tip_rack_identifier
@@ -10183,11 +10198,7 @@ liquid_handler.prcxi:
         schema:
           description: ''
           properties:
-            feedback:
-              properties: {}
-              required: []
-              title: LiquidHandlerTransfer_Feedback
-              type: object
+            feedback: {}
             goal:
               properties:
                 asp_flow_rates:
@@ -10202,6 +10213,10 @@ liquid_handler.prcxi:
                   items:
                     type: number
                   type: array
+                blow_out_air_volume_before:
+                  items:
+                    type: number
+                  type: array
                 delays:
                   items:
                     maximum: 2147483647
@@ -10217,6 +10232,7 @@ liquid_handler.prcxi:
                     type: number
                   type: array
                 is_96_well:
+                  default: false
                   type: boolean
                 liquid_height:
                   items:
@@ -10229,6 +10245,7 @@ liquid_handler.prcxi:
                   minimum: -2147483648
                   type: integer
                 mix_stage:
+                  default: none
                   type: string
                 mix_times:
                   maximum: 2147483647
@@ -10239,6 +10256,7 @@ liquid_handler.prcxi:
                   minimum: -2147483648
                   type: integer
                 none_keys:
+                  default: []
                   items:
                     type: string
                   type: array
@@ -10334,6 +10352,7 @@ liquid_handler.prcxi:
                     type: object
                   type: array
                 spread:
+                  default: wide
                   type: string
                 targets:
                   items:
@@ -10486,6 +10505,7 @@ liquid_handler.prcxi:
                     type: object
                   type: array
                 touch_tip:
+                  default: false
                   type: boolean
                 use_channels:
                   items:
@@ -10494,45 +10514,221 @@ liquid_handler.prcxi:
                     type: integer
                   type: array
               required:
-              - asp_vols
-              - dis_vols
               - sources
               - targets
               - tip_racks
-              - use_channels
-              - asp_flow_rates
-              - dis_flow_rates
-              - offsets
-              - touch_tip
-              - liquid_height
-              - blow_out_air_volume
-              - spread
-              - is_96_well
-              - mix_stage
-              - mix_times
-              - mix_vol
-              - mix_rate
-              - mix_liquid_height
-              - delays
-              - none_keys
-              title: LiquidHandlerTransfer_Goal
+              - asp_vols
+              - dis_vols
               type: object
             result:
+              $defs:
+                ResourceDict:
+                  properties:
+                    class:
+                      description: Resource class name
+                      title: Class
+                      type: string
+                    config:
+                      additionalProperties: true
+                      description: Resource configuration
+                      title: Config
+                      type: object
+                    data:
+                      additionalProperties: true
+                      description: 'Resource data, eg: container liquid data'
+                      title: Data
+                      type: object
+                    description:
+                      default: ''
+                      description: Resource description
+                      title: Description
+                      type: string
+                    extra:
+                      additionalProperties: true
+                      description: 'Extra data, eg: slot index'
+                      title: Extra
+                      type: object
+                    icon:
+                      default: ''
+                      description: Resource icon
+                      title: Icon
+                      type: string
+                    id:
+                      description: Resource ID
+                      title: Id
+                      type: string
+                    model:
+                      additionalProperties: true
+                      description: Resource model
+                      title: Model
+                      type: object
+                    name:
+                      description: Resource name
+                      title: Name
+                      type: string
+                    parent:
+                      anyOf:
+                      - $ref: '#/$defs/ResourceDict'
+                      - type: 'null'
+                      default: null
+                      description: Parent resource object
+                    parent_uuid:
+                      anyOf:
+                      - type: string
+                      - type: 'null'
+                      default: null
+                      description: Parent resource uuid
+                      title: Parent Uuid
+                    pose:
+                      $ref: '#/$defs/ResourceDictPosition'
+                      description: Resource position
+                    schema:
+                      additionalProperties: true
+                      description: Resource schema
+                      title: Schema
+                      type: object
+                    type:
+                      anyOf:
+                      - const: device
+                        type: string
+                      - type: string
+                      description: Resource type
+                      title: Type
+                    uuid:
+                      description: Resource UUID
+                      title: Uuid
+                      type: string
+                  required:
+                  - id
+                  - uuid
+                  - name
+                  - type
+                  - class
+                  - config
+                  - data
+                  - extra
+                  title: ResourceDict
+                  type: object
+                ResourceDictPosition:
+                  properties:
+                    cross_section_type:
+                      default: rectangle
+                      description: Cross section type
+                      enum:
+                      - rectangle
+                      - circle
+                      - rounded_rectangle
+                      title: Cross Section Type
+                      type: string
+                    layout:
+                      default: x-y
+                      description: Resource layout
+                      enum:
+                      - 2d
+                      - x-y
+                      - z-y
+                      - x-z
+                      title: Layout
+                      type: string
+                    position:
+                      $ref: '#/$defs/ResourceDictPositionObject'
+                      description: Resource position
+                    position3d:
+                      $ref: '#/$defs/ResourceDictPositionObject'
+                      description: Resource position in 3D space
+                    rotation:
+                      $ref: '#/$defs/ResourceDictPositionObject'
+                      description: Resource rotation
+                    scale:
+                      $ref: '#/$defs/ResourceDictPositionScale'
+                      description: Resource scale
+                    size:
+                      $ref: '#/$defs/ResourceDictPositionSize'
+                      description: Resource size
+                  title: ResourceDictPosition
+                  type: object
+                ResourceDictPositionObject:
+                  properties:
+                    x:
+                      default: 0.0
+                      description: X coordinate
+                      title: X
+                      type: number
+                    y:
+                      default: 0.0
+                      description: Y coordinate
+                      title: Y
+                      type: number
+                    z:
+                      default: 0.0
+                      description: Z coordinate
+                      title: Z
+                      type: number
+                  title: ResourceDictPositionObject
+                  type: object
+                ResourceDictPositionScale:
+                  properties:
+                    x:
+                      default: 0.0
+                      description: x scale
+                      title: X
+                      type: number
+                    y:
+                      default: 0.0
+                      description: y scale
+                      title: Y
+                      type: number
+                    z:
+                      default: 0.0
+                      description: z scale
+                      title: Z
+                      type: number
+                  title: ResourceDictPositionScale
+                  type: object
+                ResourceDictPositionSize:
+                  properties:
+                    depth:
+                      default: 0.0
+                      description: Depth
+                      title: Depth
+                      type: number
+                    height:
+                      default: 0.0
+                      description: Height
+                      title: Height
+                      type: number
+                    width:
+                      default: 0.0
+                      description: Width
+                      title: Width
+                      type: number
+                  title: ResourceDictPositionSize
+                  type: object
               properties:
-                return_info:
-                  type: string
-                success:
-                  type: boolean
+                sources:
+                  items:
+                    items:
+                      $ref: '#/$defs/ResourceDict'
+                    type: array
+                  title: Sources
+                  type: array
+                targets:
+                  items:
+                    items:
+                      $ref: '#/$defs/ResourceDict'
+                    type: array
+                  title: Targets
+                  type: array
               required:
-              - return_info
-              - success
-              title: LiquidHandlerTransfer_Result
+              - sources
+              - targets
+              title: TransferLiquidReturn
               type: object
           required:
           - goal
-          title: LiquidHandlerTransfer
+          title: transfer_liquid参数
           type: object
-        type: LiquidHandlerTransfer
+        type: UniLabJsonCommandAsync
     module: unilabos.devices.liquid_handling.prcxi.prcxi:PRCXI9300Handler
     status_types:
       reset_ok: bool
@@ -10555,6 +10751,12 @@ liquid_handler.prcxi:
           type: string
         deck:
           type: object
+        deck_y:
+          default: 400
+          type: string
+        deck_z:
+          default: 300
+          type: string
         host:
           type: string
         is_9320:
@@ -10565,17 +10767,44 @@ liquid_handler.prcxi:
           type: string
         port:
           type: integer
+        rail_interval:
+          default: 0
+          type: string
+        rail_nums:
+          default: 4
+          type: string
+        rail_width:
+          default: 27.5
+          type: string
         setup:
           default: true
           type: string
         simulator:
           default: false
           type: string
+        start_rail:
+          default: 2
+          type: string
         step_mode:
           default: false
           type: string
         timeout:
           type: number
+        x_increase:
+          default: -0.003636
+          type: string
+        x_offset:
+          default: -0.8
+          type: string
+        xy_coupling:
+          default: -0.0045
+          type: string
+        y_increase:
+          default: -0.003636
+          type: string
+        y_offset:
+          default: -37.98
+          type: string
       required:
       - deck
       - host

unilabos/resources/resource_tracker.py

@@ -534,10 +534,17 @@ class ResourceTreeSet(object):
             trees.append(tree_instance)
         return cls(trees)
 
-    def to_plr_resources(self, skip_devices=True) -> List["PLRResource"]:
+    def to_plr_resources(
+        self, skip_devices: bool = True, requested_uuids: Optional[List[str]] = None
+    ) -> List["PLRResource"]:
         """
         将 ResourceTreeSet 转换为 PLR 资源列表
 
+        Args:
+            skip_devices: 是否跳过 device 类型节点
+            requested_uuids: 若指定，则按此 UUID 顺序返回对应资源（用于批量查询时一一对应），
+                否则返回各树的根节点列表
+
         Returns:
             List[PLRResource]: PLR 资源实例列表
         """
@@ -593,6 +600,71 @@ class ResourceTreeSet(object):
                 d["model"] = res.config.get("model", None)
             return d
 
+        # deserialize 会单独处理的元数据 key，不传给构造函数
+        _META_KEYS = {"type", "parent_name", "location", "children", "rotation", "barcode"}
+        # deserialize 自定义逻辑使用的 key（如 TipSpot 用 prototype_tip 构建 make_tip），需保留
+        _DESERIALIZE_PRESERVED_KEYS = {"prototype_tip"}
+
+        def remove_incompatible_params(plr_d: dict) -> None:
+            """递归移除 PLR 类不接受的参数，避免 deserialize 报错。
+            - 移除构造函数不接受的参数（如 compute_height_from_volume、ordering、category）
+            - 对 TubeRack：将 ordering 转为 ordered_items
+            - 保留 deserialize 自定义逻辑需要的 key（如 prototype_tip）
+            """
+            if "type" in plr_d:
+                sub_cls = find_subclass(plr_d["type"], PLRResource)
+                if sub_cls is not None:
+                    spec = inspect.signature(sub_cls)
+                    valid_params = set(spec.parameters.keys())
+                    # TubeRack 特殊处理：先转换 ordering，再参与后续过滤
+                    if "ordering" not in valid_params and "ordering" in plr_d:
+                        ordering = plr_d.pop("ordering", None)
+                        if sub_cls.__name__ == "TubeRack":
+                            plr_d["ordered_items"] = (
+                                _ordering_to_ordered_items(plr_d, ordering)
+                                if ordering
+                                else {}
+                            )
+                    # 移除构造函数不接受的参数（保留 META 和 deserialize 自定义逻辑需要的 key）
+                    for key in list(plr_d.keys()):
+                        if (
+                            key not in _META_KEYS
+                            and key not in _DESERIALIZE_PRESERVED_KEYS
+                            and key not in valid_params
+                        ):
+                            plr_d.pop(key, None)
+            for child in plr_d.get("children", []):
+                remove_incompatible_params(child)
+
+        def _ordering_to_ordered_items(plr_d: dict, ordering: dict) -> dict:
+            """将 ordering 转为 ordered_items，从 children 构建 Tube 对象"""
+            from pylabrobot.resources import Tube, Coordinate
+            from pylabrobot.serializer import deserialize as plr_deserialize
+
+            children = plr_d.get("children", [])
+            ordered_items = {}
+            for idx, (ident, child_name) in enumerate(ordering.items()):
+                child_data = children[idx] if idx < len(children) else None
+                if child_data is None:
+                    continue
+                loc_data = child_data.get("location")
+                loc = (
+                    plr_deserialize(loc_data)
+                    if loc_data
+                    else Coordinate(0, 0, 0)
+                )
+                tube = Tube(
+                    name=child_data.get("name", child_name or ident),
+                    size_x=child_data.get("size_x", 10),
+                    size_y=child_data.get("size_y", 10),
+                    size_z=child_data.get("size_z", 50),
+                    max_volume=child_data.get("max_volume", 1000),
+                )
+                tube.location = loc
+                ordered_items[ident] = tube
+            plr_d["children"] = []  # 已并入 ordered_items，避免重复反序列化
+            return ordered_items
+
         plr_resources = []
         tracker = DeviceNodeResourceTracker()
 
@@ -612,9 +684,7 @@ class ResourceTreeSet(object):
                     raise ValueError(
                         f"无法找到类型 {plr_dict['type']} 对应的 PLR 资源类。原始信息：{tree.root_node.res_content}"
                     )
-                spec = inspect.signature(sub_cls)
-                if "category" not in spec.parameters:
-                    plr_dict.pop("category", None)
+                remove_incompatible_params(plr_dict)
                 plr_resource = sub_cls.deserialize(plr_dict, allow_marshal=True)
                 from pylabrobot.resources import Coordinate
                 from pylabrobot.serializer import deserialize
@@ -628,12 +698,47 @@ class ResourceTreeSet(object):
                 plr_resources.append(plr_resource)
 
             except Exception as e:
-                logger.error(f"转换 PLR 资源失败: {e} {str(plr_dict)[:1000]}")
+                logger.error(f"转换 PLR 资源失败: {e}")
                 import traceback
 
                 logger.error(f"堆栈: {traceback.format_exc()}")
                 raise
 
+        if requested_uuids:
+            # 按请求的 UUID 顺序返回对应资源（从整棵树中按 uuid 提取）
+            # 优先使用 tracker.uuid_to_resources；若映射缺失，再递归遍历 PLR 树兜底搜索。
+            def _find_plr_by_uuid(roots: List["PLRResource"], uid: str) -> Optional["PLRResource"]:
+                stack = list(roots)
+                while stack:
+                    node = stack.pop()
+                    node_uid = getattr(node, "unilabos_uuid", None)
+                    if node_uid == uid:
+                        return node
+                    children = getattr(node, "children", None) or []
+                    stack.extend(children)
+                return None
+
+            result = []
+            missing_uuids = []
+            for uid in requested_uuids:
+                found = tracker.uuid_to_resources.get(uid)
+                if found is None:
+                    found = _find_plr_by_uuid(plr_resources, uid)
+                    if found is not None:
+                        # 回填缓存，后续相同 uuid 可直接命中
+                        tracker.uuid_to_resources[uid] = found
+                if found is None:
+                    missing_uuids.append(uid)
+                else:
+                    result.append(found)
+
+            if missing_uuids:
+                raise ValueError(
+                    f"请求的 UUID 未在资源树中找到: {missing_uuids}。"
+                    f"可用 UUID 数量: {len(tracker.uuid_to_resources)}，"
+                    f"资源树数量: {len(self.trees)}"
+                )
+            return result
         return plr_resources
 
     @classmethod

unilabos/workflow/common.py

@@ -51,6 +51,7 @@
 --------------------------------------------------------------------------------
 - 遍历 workflow 数组，为每个动作创建步骤节点
 - 参数重命名: asp_vol -> asp_vols, dis_vol -> dis_vols, asp_flow_rate -> asp_flow_rates, dis_flow_rate -> dis_flow_rates
+- 参数输入转换: liquid_height（按 wells 扩展）；mix_stage/mix_times/mix_vol/mix_rate/mix_liquid_height 保持标量
 - 参数扩展: 根据 targets 的 wells 数量，将单值扩展为数组
     例: asp_vol=100.0, targets 有 3 个 wells -> asp_vols=[100.0, 100.0, 100.0]
 - 连接处理: 如果 sources/targets 已通过 set_liquid_from_plate 连接，参数值改为 []
@@ -119,11 +120,14 @@ DEVICE_NAME_DEFAULT = "PRCXI"  # transfer_liquid, set_liquid_from_plate 等动
 # 节点类型
 NODE_TYPE_DEFAULT = "ILab"  # 所有节点的默认类型
 
+CLASS_NAMES_MAPPING = {
+    "plate": "PRCXI_BioER_96_wellplate",
+    "tip_rack": "PRCXI_300ul_Tips",
+}
 # create_resource 节点默认参数
 CREATE_RESOURCE_DEFAULTS = {
     "device_id": "/PRCXI",
     "parent_template": "/PRCXI/PRCXI_Deck",
-    "class_name": "PRCXI_BioER_96_wellplate",
 }
 
 # 默认液体体积 (uL)
@@ -367,11 +371,10 @@ def build_protocol_graph(
     """统一的协议图构建函数，根据设备类型自动选择构建逻辑
 
     Args:
-        labware_info: reagent 信息字典，格式为 {name: {slot, well}, ...}，用于 set_liquid 和 well 查找
+        labware_info: labware 信息字典，格式为 {name: {slot, well, labware, ...}, ...}
         protocol_steps: 协议步骤列表
         workstation_name: 工作站名称
         action_resource_mapping: action 到 resource_name 的映射字典，可选
-        labware_defs: labware 定义列表，格式为 [{"name": "...", "slot": "1", "type": "lab_xxx"}, ...]
     """
     G = WorkflowGraph()
     resource_last_writer = {}  # reagent_name -> "node_id:port"
@@ -379,7 +382,21 @@ def build_protocol_graph(
 
     protocol_steps = refactor_data(protocol_steps, action_resource_mapping)
 
-    # ==================== 第一步：按 slot 创建 create_resource 节点 ====================
+    # ==================== 第一步：按 slot 去重创建 create_resource 节点 ====================
+    # 收集所有唯一的 slot
+    slots_info = {}  # slot -> {labware, res_id}
+    for labware_id, item in labware_info.items():
+        slot = str(item.get("slot", ""))
+        labware = item.get("labware", "")
+        if slot and slot not in slots_info:
+            res_id = f"{labware}_slot_{slot}"
+            slots_info[slot] = {
+                "labware": labware,
+                "res_id": res_id,
+                "labware_id": labware_id,
+                "object": item.get("object", ""),
+            }
+
     # 创建 Group 节点，包含所有 create_resource 节点
     group_node_id = str(uuid.uuid4())
     G.add_node(
@@ -395,41 +412,40 @@ def build_protocol_graph(
         param=None,
     )
 
-    # 直接使用 JSON 中的 labware 定义，每个 slot 一条记录，type 即 class_name
-    res_index = 0
-    for lw in (labware_defs or []):
-        slot = str(lw.get("slot", ""))
-        if not slot or slot in slot_to_create_resource:
-            continue  # 跳过空 slot 或已处理的 slot
-
-        lw_name = lw.get("name", f"slot {slot}")
-        lw_type = lw.get("type", CREATE_RESOURCE_DEFAULTS["class_name"])
-        res_id = f"plate_slot_{slot}"
-
-        res_index += 1
+    # 为每个唯一的 slot 创建 create_resource 节点
+    for slot, info in slots_info.items():
         node_id = str(uuid.uuid4())
+        res_id = info["res_id"]
+        res_type_name = info["labware"].lower().replace(".", "point")
+        object_type = info.get("object", "")
+        res_type_name = f"lab_{res_type_name}"
+        if object_type == "trash":
+            res_type_name = "PRCXI_trash"
         G.add_node(
             node_id,
             template_name="create_resource",
             resource_name="host_node",
-            name=lw_name,
-            description=f"Create {lw_name}",
+            name=f"{res_type_name}_slot{slot}",
+            description=f"Create plate on slot {slot}",
             lab_node_type="Labware",
             footer="create_resource-host_node",
             device_name=DEVICE_NAME_HOST,
             type=NODE_TYPE_DEFAULT,
-            parent_uuid=group_node_id,
-            minimized=True,
+            parent_uuid=group_node_id,  # 指向 Group 节点
+            minimized=True,  # 折叠显示
             param={
                 "res_id": res_id,
                 "device_id": CREATE_RESOURCE_DEFAULTS["device_id"],
-                "class_name": lw_type,
-                "parent": CREATE_RESOURCE_DEFAULTS["parent_template"],
+                "class_name": res_type_name,
+                "parent": CREATE_RESOURCE_DEFAULTS["parent_template"].format(slot=slot),
                 "bind_locations": {"x": 0.0, "y": 0.0, "z": 0.0},
                 "slot_on_deck": slot,
             },
         )
         slot_to_create_resource[slot] = node_id
+        if object_type == "tiprack":
+            resource_last_writer[info["labware_id"]] = f"{node_id}:labware"
+        # create_resource 之间不需要 ready 连接
 
     # ==================== 第二步：为每个 reagent 创建 set_liquid_from_plate 节点 ====================
     # 创建 Group 节点，包含所有 set_liquid_from_plate 节点
@@ -464,6 +480,8 @@ def build_protocol_graph(
         # res_id 不能有空格
         res_id = str(labware_id).replace(" ", "_")
         well_count = len(wells)
+        object_type = item.get("object", "")
+        liquid_volume = DEFAULT_LIQUID_VOLUME if object_type == "source" else 0
 
         node_id = str(uuid.uuid4())
         set_liquid_index += 1
@@ -484,7 +502,7 @@ def build_protocol_graph(
                 "plate": [],  # 通过连接传递
                 "well_names": wells,  # 孔位名数组，如 ["A1", "A3", "A5"]
                 "liquid_names": [res_id] * well_count,
-                "volumes": [DEFAULT_LIQUID_VOLUME] * well_count,
+                "volumes": [liquid_volume] * well_count,
             },
         )
 
@@ -511,6 +529,7 @@ def build_protocol_graph(
         "reagent": "reagent",
         "solvent": "solvent",
         "compound": "compound",
+        "tip_racks": "tip_rack_identifier",
     }
 
     OUTPUT_PORT_MAPPING = {
@@ -525,8 +544,17 @@ def build_protocol_graph(
         "compound": "compound",
     }
 
-    # 需要根据 wells 数量扩展的参数列表（复数形式）
-    EXPAND_BY_WELLS_PARAMS = ["asp_vols", "dis_vols", "asp_flow_rates", "dis_flow_rates"]
+    # 需要根据 wells 数量扩展的参数列表：
+    # - 复数参数（asp_vols 等）支持单值自动扩展
+    # - liquid_height 按 wells 扩展为数组
+    # - mix_* 参数保持标量，避免被转换为 list
+    EXPAND_BY_WELLS_PARAMS = [
+        "asp_vols",
+        "dis_vols",
+        "asp_flow_rates",
+        "dis_flow_rates",
+        "liquid_height",
+    ]
 
     # 处理协议步骤
     for step in protocol_steps:
@@ -540,6 +568,57 @@ def build_protocol_graph(
             if old_name in params:
                 params[new_name] = params.pop(old_name)
 
+        # touch_tip 输入归一化：
+        # - 支持 bool / 0/1 / "true"/"false" / 单元素 list
+        # - 最终统一为 bool 标量，避免被下游误当作序列处理
+        if "touch_tip" in params:
+            touch_tip_value = params.get("touch_tip")
+            if isinstance(touch_tip_value, list):
+                if len(touch_tip_value) == 1:
+                    touch_tip_value = touch_tip_value[0]
+                elif len(touch_tip_value) == 0:
+                    touch_tip_value = False
+                else:
+                    warnings.append(f"touch_tip 期望标量，但收到长度为 {len(touch_tip_value)} 的列表，使用首个值")
+                    touch_tip_value = touch_tip_value[0]
+            if isinstance(touch_tip_value, str):
+                norm = touch_tip_value.strip().lower()
+                if norm in {"true", "1", "yes", "y", "on"}:
+                    touch_tip_value = True
+                elif norm in {"false", "0", "no", "n", "off", ""}:
+                    touch_tip_value = False
+                else:
+                    warnings.append(f"touch_tip 字符串值无法识别: {touch_tip_value}，按 True 处理")
+                    touch_tip_value = True
+            elif isinstance(touch_tip_value, (int, float)):
+                touch_tip_value = bool(touch_tip_value)
+            elif touch_tip_value is None:
+                touch_tip_value = False
+            else:
+                touch_tip_value = bool(touch_tip_value)
+            params["touch_tip"] = touch_tip_value
+
+        # delays 输入归一化：
+        # - 支持标量（int/float/字符串数字）与 list
+        # - 最终统一为数字列表，供下游按 delays[0]/delays[1] 使用
+        if "delays" in params:
+            delays_value = params.get("delays")
+            if delays_value is None or delays_value == "":
+                params["delays"] = []
+            else:
+                raw_list = delays_value if isinstance(delays_value, list) else [delays_value]
+                normalized_delays = []
+                for delay_item in raw_list:
+                    if isinstance(delay_item, str):
+                        delay_item = delay_item.strip()
+                        if delay_item == "":
+                            continue
+                    try:
+                        normalized_delays.append(float(delay_item))
+                    except (TypeError, ValueError):
+                        warnings.append(f"delays 包含无法转换为数字的值: {delay_item}，已忽略")
+                params["delays"] = normalized_delays
+
         # 处理输入连接
         for param_key, target_port in INPUT_PORT_MAPPING.items():
             resource_name = params.get(param_key)