support notebook id

(cherry picked from commit bcb1790897)

.conda/base/recipe.yaml

@@ -3,7 +3,7 @@
 
 package:
   name: unilabos
-  version: 0.11.1
+  version: 0.11.2
 
 source:
   path: ../../unilabos
@@ -54,7 +54,7 @@ requirements:
   - pymodbus
   - matplotlib
   - pylibftdi
-  - uni-lab::unilabos-env ==0.11.1
+  - uni-lab::unilabos-env ==0.11.2
 
 about:
   repository: https://github.com/deepmodeling/Uni-Lab-OS

.conda/environment/recipe.yaml

@@ -2,7 +2,7 @@
 
 package:
   name: unilabos-env
-  version: 0.11.1
+  version: 0.11.2
 
 build:
   noarch: generic

.conda/full/recipe.yaml

@@ -3,7 +3,7 @@
 
 package:
   name: unilabos-full
-  version: 0.11.1
+  version: 0.11.2
 
 build:
   noarch: generic
@@ -11,7 +11,7 @@ build:
 requirements:
   run:
   # Base unilabos package (includes unilabos-env)
-  - uni-lab::unilabos ==0.11.1
+  - uni-lab::unilabos ==0.11.2
   # Documentation tools
   - sphinx
   - sphinx_rtd_theme

.github/workflows/multi-platform-build.yml

@@ -105,6 +105,7 @@ jobs:
         with:
           miniforge-version: latest
           use-mamba: true
+          python-version: '3.11.14'
           channels: conda-forge,robostack-staging
           channel-priority: strict
           activate-environment: build-env
@@ -114,13 +115,15 @@ jobs:
       - name: Install rattler-build and anaconda-client
         if: steps.should_build.outputs.should_build == 'true'
         run: |
-          mamba install --override-channels -c conda-forge rattler-build anaconda-client -y
+          mamba install -n build-env --override-channels -c conda-forge rattler-build anaconda-client -y
 
       - name: Show environment info
         if: steps.should_build.outputs.should_build == 'true'
         run: |
           conda info
-          conda list | grep -E "(rattler-build|anaconda-client)"
+          conda list -n build-env | grep -E "(rattler-build|anaconda-client)"
+          conda run -n build-env rattler-build --version
+          conda run -n build-env anaconda --version
           echo "Platform: ${{ matrix.platform }}"
           echo "OS: ${{ matrix.os }}"
 
@@ -128,9 +131,9 @@ jobs:
         if: steps.should_build.outputs.should_build == 'true'
         run: |
           if [[ "${{ matrix.platform }}" == "osx-arm64" ]]; then
-            rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
+            conda run -n build-env rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
           else
-            rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
+            conda run -n build-env rattler-build build -r ./recipes/msgs/recipe.yaml -c robostack -c robostack-staging -c conda-forge
           fi
 
       - name: List built packages
@@ -171,5 +174,5 @@ jobs:
         run: |
           for package in $(find ./output -name "*.conda"); do
             echo "Uploading $package to unilab organization..."
-            anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
+            conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
           done

.github/workflows/unilabos-conda-build.yml

@@ -98,6 +98,7 @@ jobs:
         with:
           miniforge-version: latest
           use-mamba: true
+          python-version: '3.11.14'
           channels: conda-forge,robostack-staging,uni-lab
           channel-priority: strict
           activate-environment: build-env
@@ -107,13 +108,15 @@ jobs:
       - name: Install rattler-build and anaconda-client
         if: steps.should_build.outputs.should_build == 'true'
         run: |
-          mamba install --override-channels -c conda-forge rattler-build anaconda-client -y
+          mamba install -n build-env --override-channels -c conda-forge rattler-build anaconda-client -y
 
       - name: Show environment info
         if: steps.should_build.outputs.should_build == 'true'
         run: |
           conda info
-          conda list | grep -E "(rattler-build|anaconda-client)"
+          conda list -n build-env | grep -E "(rattler-build|anaconda-client)"
+          conda run -n build-env rattler-build --version
+          conda run -n build-env anaconda --version
           echo "Platform: ${{ matrix.platform }}"
           echo "OS: ${{ matrix.os }}"
           echo "Build full package: ${{ github.event_name == 'workflow_dispatch' && github.event.inputs.build_full == 'true' }}"
@@ -128,7 +131,7 @@ jobs:
         if: steps.should_build.outputs.should_build == 'true'
         run: |
           echo "Building unilabos-env (conda environment dependencies)..."
-          rattler-build build -r .conda/environment/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
+          conda run -n build-env rattler-build build -r .conda/environment/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge
 
       - name: Upload unilabos-env to Anaconda.org (if enabled)
         if: |
@@ -140,7 +143,7 @@ jobs:
         run: |
           echo "Uploading unilabos-env to uni-lab organization..."
           for package in $(find ./output -name "unilabos-env*.conda"); do
-            anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
+            conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
           done
 
       - name: Build unilabos (with pip package)
@@ -148,7 +151,7 @@ jobs:
         run: |
           echo "Building unilabos package..."
           # 如果已上传到 Anaconda，从 uni-lab channel 获取 unilabos-env；否则从本地 output 获取
-          rattler-build build -r .conda/base/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
+          conda run -n build-env rattler-build build -r .conda/base/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
 
       - name: Upload unilabos to Anaconda.org (if enabled)
         if: |
@@ -160,7 +163,7 @@ jobs:
         run: |
           echo "Uploading unilabos to uni-lab organization..."
           for package in $(find ./output -name "unilabos-0*.conda" -o -name "unilabos-[0-9]*.conda"); do
-            anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
+            conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
           done
 
       - name: Build unilabos-full - Only when explicitly requested
@@ -170,7 +173,7 @@ jobs:
           github.event.inputs.build_full == 'true'
         run: |
           echo "Building unilabos-full package on ${{ matrix.platform }}..."
-          rattler-build build -r .conda/full/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
+          conda run -n build-env rattler-build build -r .conda/full/recipe.yaml -c uni-lab -c robostack-staging -c conda-forge --channel ./output
 
       - name: Upload unilabos-full to Anaconda.org (if enabled)
         if: |
@@ -181,7 +184,7 @@ jobs:
         run: |
           echo "Uploading unilabos-full to uni-lab organization..."
           for package in $(find ./output -name "unilabos-full*.conda"); do
-            anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
+            conda run -n build-env anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload --user uni-lab --force "$package"
           done
 
       - name: List built packages

plan/2026-05-20_add_two_node.md

@@ -1,576 +0,0 @@
-# Peptide Station 新增三个节点：等待订单完成 + 下料确认 + take-out 同步
-
-> 日期: 2026-05-20  
-> 目标文件: [peptide_station.py](../unilabos/devices/workstation/bioyond_studio/peptide_station/peptide_station.py)  
-> 参考实现:  
-> - [bioyond_cell_workstation.py](/Users/dp/python/yxz/unilabos/devices/workstation/bioyond_studio/bioyond_cell/bioyond_cell_workstation.py)（`wait_for_order_finish`、`get_material_info`）
-> - [bioyond_rpc.py L782-824](../unilabos/devices/workstation/bioyond_studio/bioyond_rpc.py)（`take_out`）
-> - [workstation_architecture.md](../docs/developer_guide/examples/workstation_architecture.md)（HTTP 报送进入 workstation，运行态记录保存在 workstation 内存）
-> 状态: 仅需求草稿，不写代码
-
----
-
-## 一、需求背景
-
-`BioyondPeptideStation` 当前实验流程在 `start_experiment`（manual_confirm 启动调度器）之后即结束，缺少：
-
-1. **等待奔耀回报实验完成**：调度器跑完后，奔耀通过 LIMS 推送 `POST /report/order_finish` 回调；目前 peptide_station 没有把这条推送封装成 action 节点，下游无法在工作流图上等待结果，也拿不到 `usedMaterials` 等下游所需信息。
-2. **下料引导**：实验完成后操作员需要把样品/产物从仓位里取出，下料前需要看到每个物料对应的 **仓库 / 位置 / 物料名称 / 数量**；下料完成后还需要回写奔耀（调用 `take-out` 接口），让奔耀清空相应库位状态。
-
-本轮新增三个 action 节点，串在 `start_experiment` 之后：
-
-```text
-submit_experiment_dayN
-  -> start_experiment(manual_confirm 上料)
-  -> wait_for_order_finish (等回调 + 生成 unloadTable)
-  -> confirm_unload_materials (manual_confirm 下料确认)
-  -> take_out_materials (调用 take-out 同步奔耀)
-```
-
----
-
-## 二、关键设计决策
-
-### D1. 本轮只支持单订单，`order_ids` 只做占位
-
-当前不实现多订单等待、乱序回调缓存、并发 wait 隔离。节点输入以 `order_id` 为主，`order_code` 可作为调试兜底。
-
-`order_ids` 可在 handle/返回值中保留为占位字段，但实现只处理第一笔或直接忽略多订单列表。多订单、乱序回调、跨节点重跑复用缓存放到后续迭代。
-
-### D2. `start_experiment` 需要显式透传订单字段
-
-当前 `start_experiment` 只有输入 handles，缺少输出 handles；如果下游 wait 节点要接在 `start_experiment` 之后，必须让 `start_experiment` 透传：
-
-- `order_id`
-- `order_ids`（占位）
-- `order_code`
-- `resultTable`
-
-实现时给 `start_experiment` 增加对应 `ActionOutputHandle`，并在返回值里保留这些字段。`submit_experiment_dayN` 的 `start_experiment` 嵌套字典也应包含 `order_code`，便于工作流编辑器连线。
-
-### D3. `unloadTable` 必须与 `resultTable` 字段一致
-
-`unloadTable` 不新增 `posX/posY/posZ/unit` 列，直接复用现有 `RESULT_TABLE_COLUMNS` 的四列：
-
-```python
-RESULT_TABLE_COLUMNS = [
-    {"name": "设备", "key": "whName"},
-    {"name": "位置", "key": "locationCode"},
-    {"name": "物料名称", "key": "materialName"},
-    {"name": "数量", "key": "quantity"},
-]
-```
-
-`submit_experiment_dayN` 现有上料确认表 `resultTable` 形状如下；`unloadTable` 也必须保持同一 shape，只改 `tableName` 和行数据来源：
-
-```json
-{
-  "data": [
-    {
-      "whName": "自动化堆栈",
-      "locationCode": "A1",
-      "materialName": "96孔板",
-      "quantity": "1"
-    }
-  ],
-  "columns": [
-    {"name": "设备", "key": "whName"},
-    {"name": "位置", "key": "locationCode"},
-    {"name": "物料名称", "key": "materialName"},
-    {"name": "数量", "key": "quantity"}
-  ],
-  "tableName": "resultTable"
-}
-```
-
-`material-info` 官方 schema 中位置坐标字段是 `locations[].x/y/z`，不是 `posX/posY/posZ`。本轮下料表不展示坐标。
-
-### D4. manual_confirm 只做人确认，take-out 放到普通 action
-
-`confirm_unload_materials` 只负责展示下料表、等待操作员确认并透传数据；真正的 `take-out` 调用放到后续普通 action `take_out_materials`。
-
-这样更接近 UniLab manual_confirm 的推荐模式：manual_confirm 是人机确认检查点，副作用由独立普通 action 执行。
-
-### D5. 本轮不做 unload context 缓存
-
-虽然 workstation architecture 文档支持在 workstation 内存保存 HTTP 报送记录，但本轮暂不实现 `unload_context_cache` 或 order report 缓存。
-
-因此本轮限制如下：
-
-- `wait_for_order_finish` 只等待本次进入节点之后到达的 `/report/order_finish`。
-- 如果 push 早于 wait 节点到达，本轮不自动补救。
-- 如果用户在 `confirm_unload_materials` approve 时忘记勾选，节点失败；当前架构不支持原地重新弹出同一个 manual_confirm，也不在本轮实现失败节点重跑。
-- 后续若要支持重跑复用，应在 `BioyondPeptideStation` 实例上新增 station runtime 的 `unload_context_cache`，按 `orderCode` 缓存 `unloadTable/material_ids/order_id` 等上下文。
-
----
-
-## 三、节点 1：`wait_for_order_finish`（等推送 + 生成 unloadTable）
-
-### 行为
-
-1. 解析单订单目标：
-   - 首选 `order_id`。
-   - 如果没有 `order_code`，通过 `self.hardware_interface.order_report(order_id)` 取返回数据中的 `code` 作为 `orderCode`。
-   - `order_ids` 仅占位，本轮不实现多订单循环。
-2. 设置 `self.last_order_code = order_code`、`self.last_order_report = None`，并 `self.order_finish_event.clear()`。
-3. 阻塞在 `self.order_finish_event.wait(timeout=timeout_seconds)` 等 LIMS 推送。
-4. peptide_station override `process_order_finish_report(report_request, used_materials)`：
-   - 先调用 `super().process_order_finish_report(...)` 保留父类行为（状态发布、物料同步等）。
-   - 当 `report_request.data.orderCode == self.last_order_code` 时，把 `report_request.data` 存入 `self.last_order_report`，并 `set()` event。
-   - 非当前订单推送只记录日志，本轮不缓存。
-5. 解除阻塞后解析 `status`：
-   - `"30"` -> `success`
-   - `"-11"` -> `abnormal_stop`
-   - `"-12"` -> `manual_stop`
-   - 其它 -> `unknown_<status>`
-   - 超时 -> `timeout`
-6. 对 `report.usedMaterials[].materialId` 调用 `self.hardware_interface.material_info(material_id)`，带本地函数级 `material_info_cache` 避免重复请求。
-7. 组装 `unloadTable`、`material_ids`、`preintake_ids`、`unload_summary` 并作为输出 handles 暴露。
-
-### 入参（goal_default）
-
-| 参数 | 类型 | 说明 |
-|------|------|------|
-| `order_id` | `str` | 来自 `start_experiment` 透传输出，必填优先 |
-| `order_code` | `str` | 调试兜底；若已知 orderCode 可跳过 `order_report` 反查 |
-| `order_ids` | `List[str]` | 占位字段；本轮不实现多订单 |
-| `timeout_seconds` | `int` | 默认 `36000`（10h） |
-| `poll_mode` | `bool` | 默认 `False`；如需要可沿用 bioyond_cell 的轮询等待风格 |
-
-### 输出 handles
-
-| key | data_type | 说明 |
-|-----|-----------|------|
-| `order_finish_status` | `str` | `success` / `abnormal_stop` / `manual_stop` / `timeout` / `unknown_*` |
-| `order_finish_report` | `json` | 完整 `report_request.data` |
-| `used_materials` | `json` | JSON 化后的 `usedMaterials` 列表 |
-| `material_ids` | `json` | 从 `used_materials` 抽出的 `materialId` 列表，可为空 |
-| `preintake_ids` | `json` | 本轮默认 `[]`，保留扩展点 |
-| `unloadTable` | `table` | 下料表，字段与 `resultTable` 一致 |
-| `unload_summary` | `json` | `{ "order_code": ..., "total_items": N, "missing_material_info": [...] }` |
-| `order_id` | `str` | 透传给后续节点 |
-| `order_code` | `str` | 透传给后续节点 |
-| `order_ids` | `json` | 占位透传 |
-
-### `unloadTable` 组装规则
-
-返回结构：
-
-```json
-{
-  "data": [
-    {
-      "whName": "自动化堆栈",
-      "locationCode": "A1",
-      "materialName": "多肽产物",
-      "quantity": "10 mg"
-    }
-  ],
-  "columns": [
-    {"name": "设备", "key": "whName"},
-    {"name": "位置", "key": "locationCode"},
-    {"name": "物料名称", "key": "materialName"},
-    {"name": "数量", "key": "quantity"}
-  ],
-  "tableName": "unloadTable"
-}
-```
-
-每行字段：
-
-| key | 数据来源 |
-|-----|----------|
-| `whName` | `material_info.locations` 中匹配 `usedMaterials.locationId` 的 location 的 `whName`；匹配不到取第一条 location 的 `whName`；失败为空串 |
-| `locationCode` | 匹配 location 的 `code`；匹配不到取第一条 location 的 `code`；再兜底 `usedMaterials.locationId` |
-| `materialName` | `material_info.name`；失败为空串 |
-| `quantity` | `usedMaterials.usedQuantity`，若 `material_info.unit` 存在则拼成字符串（如 `"10 mg"`） |
-
-`material-info` 失败时不抛异常，对应行尽量保留 `locationCode` / `quantity`，`whName` 和 `materialName` 用空串，并把 `materialId` 放入 `unload_summary.missing_material_info`。
-
-### 接口依赖
-
-| 接口 | 调用方式 | 用途 |
-|------|----------|------|
-| `process_order_finish_report` 钩子 | 基类 HTTP 服务已注册 | 接 LIMS push |
-| `POST /api/lims/order/order-report` | `self.hardware_interface.order_report(order_id)` | 从 `order_id` 反查 `orderCode` |
-| `POST /api/lims/storage/material-info` | `self.hardware_interface.material_info(material_id)` | 查 `whName/locationCode/materialName/unit` |
-
-#### `order_report(order_id)` API 形式
-
-请求：
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-20T10:50:00.123Z",
-  "data": "<orderId UUID>"
-}
-```
-
-响应中本节点只依赖 `data.code`：
-
-```json
-{
-  "code": 1,
-  "message": null,
-  "timestamp": 1779255000000,
-  "data": {
-    "id": "<orderId UUID>",
-    "name": "实验260520-103000",
-    "code": "EXP260520-103000",
-    "status": 30,
-    "statusName": "完成"
-  }
-}
-```
-
-`BioyondV1RPC.order_report(order_id)` 已经返回响应中的 `data`，所以实现中应读取 `raw.get("code")`，不是 `raw["data"]["code"]`。
-
-#### `material_info(material_id)` API 形式
-
-请求：
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-20T10:50:00.123Z",
-  "data": "<materialId UUID>"
-}
-```
-
-响应中本节点依赖：
-
-```json
-{
-  "id": "<materialId UUID>",
-  "name": "多肽产物",
-  "unit": "mg",
-  "locations": [
-    {
-      "id": "<locationId UUID>",
-      "whid": "<warehouse UUID>",
-      "whName": "自动化堆栈",
-      "code": "A1",
-      "x": 1,
-      "y": 1,
-      "z": 1,
-      "quantity": 10
-    }
-  ]
-}
-```
-
-`BioyondV1RPC.material_info(material_id)` 已经返回响应中的 `data`。字段映射：
-
-| unloadTable key | 来源 |
-|-----------------|------|
-| `whName` | 匹配 `locationId` 的 `locations[].whName` |
-| `locationCode` | 匹配 `locationId` 的 `locations[].code` |
-| `materialName` | `name` |
-| `quantity` | `usedMaterials[].usedQuantity` + `unit` |
-
-### 实现要点
-
-- `BioyondPeptideStation.__init__` 末尾追加 `self.order_finish_event = threading.Event()`、`self.last_order_code = None`、`self.last_order_report = None`。
-- 新增 `process_order_finish_report` override，先 `super()`，再做单订单匹配。
-- `used_materials` 参数是 `MaterialUsage` dataclass 列表；输出前必须转成 JSON dict。
-- `unloadTable` 复用 `RESULT_TABLE_COLUMNS`，不新增 `UNLOAD_TABLE_COLUMNS`。
-
----
-
-## 四、节点 2：`confirm_unload_materials`（人工下料确认）
-
-### 行为
-
-1. 接收节点 1 输出的 `order_id` / `order_code` / `material_ids` / `preintake_ids` / `unloadTable`。
-2. 进入 `NodeType.MANUAL_CONFIRM` 阻塞，操作员根据 `unloadTable` 物理下料。
-3. 操作员勾选 `materials_unloaded=True` 并 approve 后，节点函数体继续。
-4. 校验 `materials_unloaded == True`：
-   - 为 True：返回确认结果，并透传 `order_id/material_ids/preintake_ids/unloadTable` 给节点 3。
-   - 为 False：抛 `RuntimeError("下料未确认，拒绝继续 take-out")`。
-
-### 入参（goal_default）
-
-| 参数 | 类型 | 说明 |
-|------|------|------|
-| `order_id` | `str` | 来自节点 1，必填 |
-| `order_code` | `str` | 来自节点 1，日志/排错用 |
-| `material_ids` | `List[str]` | 来自节点 1，可为空 |
-| `preintake_ids` | `List[str]` | 来自节点 1，默认 `[]` |
-| `unloadTable` | `table` | 来自节点 1，供人工确认展示 |
-| `materials_unloaded` | `bool` | manual_confirm 勾选字段，默认 `False` |
-| `timeout_seconds` | `int` | 默认 `3600` |
-| `assignee_user_ids` | `List[str]` | `placeholder_keys={"assignee_user_ids": "unilabos_manual_confirm"}` |
-
-### 输出 handles
-
-| key | data_type | 说明 |
-|-----|-----------|------|
-| `unload_confirmed` | `bool` | 是否已人工确认下料 |
-| `order_id` | `str` | 透传 |
-| `order_code` | `str` | 透传 |
-| `material_ids` | `json` | 透传 |
-| `preintake_ids` | `json` | 透传 |
-| `unloadTable` | `table` | 透传 |
-
-### 实现要点
-
-- 装饰器使用 `node_type=NodeType.MANUAL_CONFIRM`。
-- `always_free=True`、`placeholder_keys`、`feedback_interval=300` 与现有 `start_experiment` 保持一致。
-- 本节点不调用 `take_out`，只做确认与透传。
-- 忘记勾选后不会自动重新显示下料指引；本轮不实现缓存或失败节点原地重跑。
-
----
-
-## 五、节点 3：`take_out_materials`（调用 take-out 同步奔耀）
-
-### 行为
-
-1. 接收节点 2 透传的 `order_id` / `material_ids` / `preintake_ids`。
-2. 校验 `order_id` 非空。
-3. 调用 `self.hardware_interface.take_out(order_id, preintake_ids=preintake_ids, material_ids=material_ids)`。
-4. 返回 `take_out_result`、`unloaded_count`、`success`。
-
-### 入参
-
-| 参数 | 类型 | 说明 |
-|------|------|------|
-| `order_id` | `str` | 必填 |
-| `material_ids` | `List[str]` | 可为空；为空时由奔耀按 `orderId` 处理的能力以后现场确认 |
-| `preintake_ids` | `List[str]` | 可为空，默认 `[]` |
-| `order_code` | `str` | 日志/排错用 |
-
-### 输出 handles
-
-| key | data_type | 说明 |
-|-----|-----------|------|
-| `take_out_result` | `json` | `take-out` 原始响应 `{code, message, timestamp, data}` |
-| `unloaded_count` | `int` | `len(material_ids)` |
-| `success` | `bool` | `take_out_result.code == 1` 且 `data` 不为 False |
-
-### 接口依赖
-
-| 接口 | 调用方式 | 用途 |
-|------|----------|------|
-| `POST /api/lims/order/take-out` | `self.hardware_interface.take_out(order_id, preintake_ids, material_ids)` | 通知奔耀同步取出 |
-
-请求体 schema（helper script 已核对）：
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-20T10:50:00.123Z",
-  "data": {
-    "orderId": "<UUID>",
-    "preintakeIds": [],
-    "materialIds": ["<UUID-1>", "<UUID-2>"]
-  }
-}
-```
-
-响应 schema：
-
-```json
-{
-  "code": 1,
-  "message": null,
-  "timestamp": 1779255000000,
-  "data": true
-}
-```
-
-`BioyondV1RPC.take_out(...)` 返回完整响应包，因此 `take_out_materials` 应保留原始包到 `take_out_result`。
-
-### 实现要点
-
-- 本轮不修改 `sample_waste_removal`，保持 backward compatibility。
-- 新节点只调用现有完整能力的 `take_out(...)`。
-- `preintake_ids` / `material_ids` 都按可选列表处理，默认 `[]`。
-- `take-out` 返回 `code != 1` 时返回 `success=False` 并记录 warning；是否抛异常留作开放问题。
-
----
-
-## 六、端到端工作流连线
-
-```mermaid
-flowchart LR
-    submit["submit_experiment_dayN"] --> start["start_experiment<br/>manual_confirm: 上料"]
-    start -->|order_id, order_code| wait["wait_for_order_finish<br/>等 order_finish + 生成 unloadTable"]
-    wait -->|order_id, material_ids,<br/>preintake_ids, unloadTable| confirm["confirm_unload_materials<br/>manual_confirm: 操作员下料确认"]
-    confirm -->|order_id, material_ids,<br/>preintake_ids| takeout["take_out_materials<br/>调用 take-out 同步奔耀"]
-    bioyond["奔耀 LIMS"] -.HTTP POST /report/order_finish.-> wait
-    wait -.material-info.-> bioyond
-    takeout -.take-out.-> bioyond
-```
-
----
-
-## 七、影响面与兼容性
-
-- **`peptide_station.py`**
-  - 修改 `start_experiment`：增加 `order_id/order_code/order_ids/resultTable` 输出 handles，并在返回值透传。
-  - 增加 `wait_for_order_finish`、`confirm_unload_materials`、`take_out_materials` 三个 action。
-  - 增加 `process_order_finish_report` override。
-  - 增加 `_build_unload_table(...)` 等私有辅助方法。
-- **`bioyond_rpc.py` 不动**
-  - `take_out` 已有完整 schema 能力。
-  - `sample_waste_removal` 本轮不改，保持兼容。
-- **基类 `station.py` 不动**
-  - override 中保留 `super().process_order_finish_report(...)` 调用。
-- **HTTP 服务不动**
-  - `WorkstationHTTPService` 已支持 `/report/order_finish`。
-- **本轮不做缓存**
-  - 不新增 `unload_context_cache`。
-  - 不支持 push 早于 wait 的自动补救。
-  - 不支持失败 manual_confirm 原地重跑。
-- **测试**：补在现有路径 `unilabos/devices/workstation/bioyond_studio/peptide_station/tests/test_peptide_station_contracts.py`
-  1. `start_experiment` 输出 handles/返回值透传 `order_id/order_code/order_ids/resultTable`。
-  2. `process_order_finish_report` orderCode 匹配 / 不匹配时 event 是否触发。
-  3. `wait_for_order_finish` 单订单成功、超时、状态映射、`used_materials` JSON 化。
-  4. `_build_unload_table` 列顺序严格等于 `RESULT_TABLE_COLUMNS`，且无 `posX/posY/posZ/unit` 列。
-  5. `material-info` 失败时不抛异常，`missing_material_info` 正确记录。
-  6. `confirm_unload_materials` 未勾选时报错，勾选后透传下游字段且不调用 `take_out`。
-  7. `take_out_materials` 调用 `hardware_interface.take_out(order_id, preintake_ids, material_ids)`，不调用 `sample_waste_removal`。
-
----
-
-## 八、待人类确认的开放问题
-
-1. **过滤产物 vs 全量**：`usedMaterials` 同时包含试剂、耗材、样品（`typeMode` 区分），下料表是否需要默认排除试剂/耗材？当前默认全量列出。
-2. **take-out 失败是否阻塞工作流**：本计划暂定返回 `success=False` 并 warning，不抛异常；如果希望奔耀仓位状态必须一致，可改为抛 `RuntimeError`。
-3. **后续缓存/重跑能力**：如果要支持 push 早到、忘勾选后重跑复用 `unloadTable`，后续应在 `BioyondPeptideStation` station runtime 上实现 `unload_context_cache`，但本轮不做。
-4. **多订单**：本轮只保留 `order_ids` 占位，不实现多订单等待、乱序回调或并发 wait。
-
----
-
-## 附录 A：API schema 核对摘要
-
-使用 `temp_benyao/scripts/api_helper.py --root temp_benyao/peptide` 核对：
-
-### A.1 `POST /api/lims/storage/material-info`
-
-请求：
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-20T10:50:00.123Z",
-  "data": "<materialId UUID>"
-}
-```
-
-响应关键字段：
-
-```json
-{
-  "id": "<materialId UUID>",
-  "typeName": "样品",
-  "code": "MAT-001",
-  "barCode": "BC-001",
-  "name": "多肽产物",
-  "quantity": 10,
-  "lockQuantity": 0,
-  "unit": "mg",
-  "status": 1,
-  "isUse": true,
-  "locations": [
-    {
-      "id": "<locationId UUID>",
-      "whid": "<warehouse UUID>",
-      "whName": "自动化堆栈",
-      "code": "A1",
-      "x": 1,
-      "y": 1,
-      "z": 1,
-      "quantity": 10
-    }
-  ],
-  "detail": []
-}
-```
-
-注意：schema 没有 `posX/posY/posZ`，本轮也不展示坐标。
-
-### A.2 `POST /api/lims/order/take-out`
-
-请求：
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-20T10:50:00.123Z",
-  "data": {
-    "orderId": "<orderId UUID>",
-    "preintakeIds": [],
-    "materialIds": ["<materialId UUID>"]
-  }
-}
-```
-
-响应：
-
-```json
-{
-  "code": 1,
-  "message": null,
-  "timestamp": 1779255000000,
-  "data": true
-}
-```
-
-源码中已有 `BioyondV1RPC.take_out(order_id, preintake_ids=None, material_ids=None)`，本轮复用它。
-
-### A.3 `/report/order_finish`
-
-`/report/order_finish` 不在 Peptide JSON OpenAPI specs 中；schema 依据：
-
-- `unilabos/devices/workstation/workstation_http_service.py`
-- `temp_benyao/peptide/docs/reference/api_manual.md`
-
-关键字段：
-
-```json
-{
-  "token": "token-from-lims",
-  "request_time": "2026-05-20 10:50:00.123",
-  "data": {
-    "orderCode": "EXP260520-103000",
-    "orderName": "实验260520-103000",
-    "startTime": "2026-05-20 09:00:00",
-    "endTime": "2026-05-20 10:50:00",
-    "status": "30",
-    "usedMaterials": [
-      {
-        "materialId": "<materialId UUID>",
-        "locationId": "<locationId UUID>",
-        "typeMode": "1",
-        "usedQuantity": 10
-      }
-    ]
-  }
-}
-```
-
-`WorkstationHTTPService` 会把 `usedMaterials[]` 转成 `MaterialUsage` dataclass 列表传给 `process_order_finish_report(report_request, used_materials)`；peptide 输出 `used_materials` handle 前需要转回 JSON dict：
-
-```json
-[
-  {
-    "materialId": "<materialId UUID>",
-    "locationId": "<locationId UUID>",
-    "typeMode": "1",
-    "usedQuantity": 10
-  }
-]
-```
-
----
-
-## 附录 B：本轮不实现的内容
-
-- 不做 station runtime 的 `unload_context_cache`。
-- 不做多订单。
-- 不做 push 早到后的补救。
-- 不做 failed manual_confirm 原地重跑。
-- 不改前端。
-- 不改 `sample_waste_removal`。

plan/2026-05-21_01_peptide_reset_four_checkbox_plan.md

@@ -1,461 +0,0 @@
-# Peptide Four-Checkbox Reset Plan
-
-Date: 2026-05-21 16:30
-Status: Proposal only / not executed
-
-## Scope
-
-This plan replaces `2026-05-21_1556_peptide_reset_sirna_reference_plan.md` for Peptide reset work.
-
-User direction captured here:
-
-- `take_out` is unnecessary for Peptide reset.
-- Do not add a material-cache refresh checkbox.
-- Change reset to four checkbox-controlled operations:
-  - 调度器复位
-  - 订单状态复位
-  - 库位复位
-  - 仪器复位
-- The first three checkboxes default to checked.
-- The fourth checkbox, 仪器复位 / `reset_devices`, defaults to unchecked.
-- Replace the current public `reset` action with:
-  - `reset_auto`: normal ILab action node. This is the renamed/replaced version of the current reset implementation.
-  - `reset_manual`: manual-confirm action node with a physical cleanup confirmation message.
-
-## Evidence Summary
-
-Current Peptide source:
-
-- Reset action code is currently in `unilabos/devices/workstation/bioyond_studio/peptide_station/peptide_station.py`.
-- Current Peptide reset selects `scheduler_reset`, `reset_order_status`, and `reset_location`, and passes ids to order/location resets.
-- `BioyondV1RPC.reset_devices()` already calls `/api/lims/device/reset-devices` with only `apiKey` and `requestTime`.
-- `BioyondV1RPC.scheduler_reset()` already calls `/api/lims/scheduler/reset` with only `apiKey` and `requestTime`.
-- `BioyondV1RPC.reset_order_status(order_id)` and `reset_location(location_id)` currently send `data`, but live probes showed that omitted `data` succeeds.
-
-Live Peptide no-data reset probes using `temp_benyao/peptide/peptide_station_config.example.json`:
-
-- `POST /api/lims/order/reset-order-status` with request keys `["apiKey", "requestTime"]` returned HTTP 200 and `code=1`.
-- `POST /api/lims/scheduler/reset` with request keys `["apiKey", "requestTime"]` returned HTTP 200 and `code=1`.
-- `POST /api/lims/storage/reset-location` with request keys `["apiKey", "requestTime"]` returned HTTP 200 and `code=1`.
-- `reset-devices` was not live-probed in this session, but the current RPC wrapper already sends no `data`.
-
-Raw findings:
-
-- `temp_benyao/peptide/_findings/2026-05-21_1613_reset_order_status_no_data_live.md`
-- `temp_benyao/peptide/_findings/2026-05-21_1615_remaining_resets_no_data_live.md`
-
-## Proposed Public Actions
-
-### `reset_auto`
-
-Normal action node. This is the auto/no-manual-confirm path. It replaces the current public `reset` action; do not leave a second public `reset` action unless a later compatibility request explicitly asks for an alias.
-
-Checkbox schema rule:
-
-- Use plain `bool` annotations in the action signature.
-- Do not use `Annotated[bool, Field(...)]` for these checkbox params in this implementation plan.
-- The current AST registry schema path does not unwrap `Annotated[...]`; plain `bool` is required so generated JSON Schema marks the fields as boolean and the renderer can show checkboxes.
-- Put human-facing labels/descriptions in the method docstring or action description. If field-level `Field(description=...)` metadata is required later, add registry `Annotated` support and a schema test as a separate change.
-
-Decorator shape:
-
-```python
-@action(
-    always_free=True,
-    goal_default={
-        "reset_scheduler": True,
-        "reset_order_status": True,
-        "reset_location": True,
-        "reset_devices": False,
-    },
-    description="自动复位调度器/订单状态/库位，可选仪器复位",
-)
-def reset_auto(
-    self,
-    reset_scheduler: bool = True,
-    reset_order_status: bool = True,
-    reset_location: bool = True,
-    reset_devices: bool = False,
-    **kwargs: Any,
-) -> Dict[str, Any]:
-    """自动复位调度器/订单状态/库位，可选仪器复位。
-
-    Args:
-        reset_scheduler[调度器复位]: 调用 /api/lims/scheduler/reset，默认勾选。
-        reset_order_status[订单状态复位]: 调用 /api/lims/order/reset-order-status，默认勾选。
-        reset_location[库位复位]: 调用 /api/lims/storage/reset-location，默认勾选。
-        reset_devices[仪器复位]: 调用 /api/lims/device/reset-devices，默认不勾选。
-    """
-    ...
-```
-
-Implementation notes:
-
-- Use real plain-`bool` parameters, not hidden `**kwargs` and not `Annotated`, so the action renderer can expose four checkboxes.
-- Rename/replace the existing `reset` action as `reset_auto`; the implementation should not keep the old id-shaped `reset` action as another public path by default.
-- Keep the three routine reset defaults checked.
-- Keep `reset_devices` unchecked because it can be broader and more disruptive.
-- Do not require or resolve order ids or location ids.
-- Do not call `take_out`.
-- Do not call `refresh_material_cache`.
-
-### `reset_manual`
-
-Manual-confirm node. It should show the operator a physical cleanup warning, then execute the same reset helper as `reset_auto` after the operator confirms.
-
-Actual manual-confirm decorator pattern in this repo:
-
-- Use `@action(node_type=NodeType.MANUAL_CONFIRM)`.
-- Set `always_free=True`.
-- Add `placeholder_keys={"assignee_user_ids": "unilabos_manual_confirm"}`.
-- Include `timeout_seconds: int` and `assignee_user_ids: list[str]`.
-- Add `goal_default` for `timeout_seconds` and `assignee_user_ids`.
-- Manual-confirm actions are normally side-effect-light, but existing Peptide `start_experiment` is already a `MANUAL_CONFIRM` action that performs scheduler start after the operator gate, so a reset-after-confirm pattern is compatible with current Peptide style.
-
-Proposed confirmation text:
-
-```text
-请确认G3、CEM、Tecan、撕膜机、封膜机、打标机、旋转堆栈上下料位、3个转台等位置的物料已清理完毕；
-请开门检查冰箱、IDOT、酶标仪、离心机、LCMS内部没有遗留物料。
-```
-
-Decorator/function shape:
-
-```python
-RESET_MANUAL_CONFIRM_MESSAGE = (
-    "请确认G3、CEM、Tecan、撕膜机、封膜机、打标机、旋转堆栈上下料位、3个转台等位置的物料已清理完毕；\n"
-    "请开门检查冰箱、IDOT、酶标仪、离心机、LCMS内部没有遗留物料。"
-)
-
-@action(
-    always_free=True,
-    node_type=NodeType.MANUAL_CONFIRM,
-    placeholder_keys={"assignee_user_ids": "unilabos_manual_confirm"},
-    goal_default={
-        "reset_scheduler": True,
-        "reset_order_status": True,
-        "reset_location": True,
-        "reset_devices": False,
-        "physical_cleanup_confirmed": False,
-        "timeout_seconds": 3600,
-        "assignee_user_ids": [],
-    },
-    feedback_interval=300,
-    description=RESET_MANUAL_CONFIRM_MESSAGE,
-)
-def reset_manual(
-    self,
-    reset_scheduler: bool = True,
-    reset_order_status: bool = True,
-    reset_location: bool = True,
-    reset_devices: bool = False,
-    physical_cleanup_confirmed: bool = False,
-    timeout_seconds: int = 3600,
-    assignee_user_ids: Optional[List[str]] = None,
-    **kwargs: Any,
-) -> Dict[str, Any]:
-    """人工确认物理清理后执行复位。
-
-    Args:
-        reset_scheduler[调度器复位]: 调用 /api/lims/scheduler/reset，默认勾选。
-        reset_order_status[订单状态复位]: 调用 /api/lims/order/reset-order-status，默认勾选。
-        reset_location[库位复位]: 调用 /api/lims/storage/reset-location，默认勾选。
-        reset_devices[仪器复位]: 调用 /api/lims/device/reset-devices，默认不勾选。
-        physical_cleanup_confirmed[物理清理确认]: 确认清理提示中的物料检查已经完成，默认不勾选。
-    """
-    ...
-```
-
-Execution rule:
-
-- If `physical_cleanup_confirmed` is false, return a blocked result and do not call any reset API.
-- If it is true, call the same internal helper as `reset_auto`.
-- Return `confirmation_message` in the result payload so call logs preserve the exact operator instruction text.
-
-Renderer caveat:
-
-- `description` should carry the warning in generated action metadata.
-- `physical_cleanup_confirmed` must remain a plain `bool` so it renders as a checkbox.
-- The cleanup warning should be carried by the action `description` and the docstring param description. Do not rely on `Field(description=...)` unless registry `Annotated` support has been implemented and tested.
-- If the current frontend does not show action descriptions or docstring field descriptions reliably, add a read-only string parameter such as `confirmation_message: str = RESET_MANUAL_CONFIRM_MESSAGE` with `goal_default`, or use a handle-based display only after renderer behavior is verified.
-
-## Shared Internal Helper
-
-Both public actions should delegate to one helper, for example:
-
-```python
-def _execute_reset_operations(
-    self,
-    *,
-    reset_scheduler: bool,
-    reset_order_status: bool,
-    reset_location: bool,
-    reset_devices: bool,
-) -> Dict[str, Any]:
-    ...
-```
-
-Call order:
-
-1. `scheduler_reset`
-2. `reset_order_status`
-3. `reset_location`
-4. `reset_devices`
-
-Result shape:
-
-```python
-{
-    "selected_operations": [
-        {"key": "reset_scheduler", "label": "调度器复位", "selected": True},
-        {"key": "reset_order_status", "label": "订单状态复位", "selected": True},
-        {"key": "reset_location", "label": "库位复位", "selected": True},
-        {"key": "reset_devices", "label": "仪器复位", "selected": False},
-    ],
-    "executed_calls": [
-        {"operation": "scheduler_reset", "endpoint": "/api/lims/scheduler/reset", "result": {"code": 1}},
-    ],
-    "skipped_operations": [
-        {"operation": "reset_devices", "reason": "checkbox_disabled"},
-    ],
-    "warnings": [],
-}
-```
-
-Failure handling:
-
-- Execute selected operations sequentially and record each result.
-- If an operation returns non-`1` code, add a warning and continue unless the caller later requests fail-fast.
-- If an RPC method raises, catch it, record an error entry, and continue to the next selected operation unless fail-fast is introduced.
-
-## RPC Wrapper Adjustment
-
-Adjust the two id-shaped wrappers to no-data calls:
-
-- `BioyondV1RPC.reset_order_status()` should no longer require `order_id`.
-- `BioyondV1RPC.reset_location()` should no longer require `location_id`.
-
-Current no-data wrappers already exist:
-
-- `scheduler_reset()`
-- `reset_devices()`
-
-Suggested RPC signatures:
-
-```python
-def scheduler_reset(self) -> int: ...
-def reset_order_status(self) -> int: ...
-def reset_location(self) -> int: ...
-def reset_devices(self) -> int: ...
-```
-
-Compatibility option:
-
-```python
-def reset_order_status(self, order_id: Optional[str] = None) -> int:
-    del order_id
-    ...
-
-def reset_location(self, location_id: Optional[str] = None) -> int:
-    del location_id
-    ...
-```
-
-This keeps older code from crashing while making the actual wire request no-data.
-
-## Adjusted Runtime API Schemas
-
-These are the schemas Peptide reset code should target at runtime after the live no-data probes. They intentionally omit `data`, even though OpenAPI models nullable `data` for these endpoints.
-
-All four requests use:
-
-```json
-{
-  "apiKey": "string",
-  "requestTime": "date-time"
-}
-```
-
-No `data` field should be sent by default.
-
-All four responses use:
-
-```json
-{
-  "code": 1,
-  "message": "",
-  "timestamp": 0
-}
-```
-
-### 调度器复位
-
-Endpoint:
-
-```text
-POST /api/lims/scheduler/reset
-```
-
-Adjusted request:
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-21T08:15:16.494Z"
-}
-```
-
-Live response:
-
-```json
-{
-  "code": 1,
-  "message": "",
-  "timestamp": 1779351316072
-}
-```
-
-Notes:
-
-- OpenAPI says `data` is nullable int32.
-- Live Peptide accepted omitted `data`.
-
-### 订单状态复位
-
-Endpoint:
-
-```text
-POST /api/lims/order/reset-order-status
-```
-
-Adjusted request:
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-21T08:13:34.750Z"
-}
-```
-
-Live response:
-
-```json
-{
-  "code": 1,
-  "message": "",
-  "timestamp": 1779351214422
-}
-```
-
-Notes:
-
-- OpenAPI says `data` is nullable string.
-- Live Peptide accepted omitted `data`.
-- Do not model this as order-id scoped unless Bioyond confirms backend behavior.
-
-### 库位复位
-
-Endpoint:
-
-```text
-POST /api/lims/storage/reset-location
-```
-
-Adjusted request:
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "2026-05-21T08:15:18.924Z"
-}
-```
-
-Live response:
-
-```json
-{
-  "code": 1,
-  "message": "",
-  "timestamp": 1779351318565
-}
-```
-
-Notes:
-
-- OpenAPI says `data` is nullable string.
-- Live Peptide accepted omitted `data`.
-- Do not model this as location-id scoped unless Bioyond confirms backend behavior.
-
-### 仪器复位
-
-Endpoint:
-
-```text
-POST /api/lims/device/reset-devices
-```
-
-Adjusted request:
-
-```json
-{
-  "apiKey": "B10B5995",
-  "requestTime": "date-time"
-}
-```
-
-Expected response shape:
-
-```json
-{
-  "code": 1,
-  "message": "",
-  "timestamp": 0
-}
-```
-
-Notes:
-
-- OpenAPI says `data` is nullable string.
-- Current `BioyondV1RPC.reset_devices()` already sends no `data`.
-- This endpoint was not live-probed in the no-data reset session.
-- Keep checkbox default unchecked.
-
-## Tests To Add Before Implementation
-
-1. `reset_auto` is not `NodeType.MANUAL_CONFIRM`.
-2. `reset_manual` has `node_type=NodeType.MANUAL_CONFIRM`.
-3. `reset_manual` metadata includes:
-   - `always_free=True`
-   - `placeholder_keys={"assignee_user_ids": "unilabos_manual_confirm"}`
-   - `timeout_seconds=3600`
-   - `assignee_user_ids=[]`
-   - `physical_cleanup_confirmed=False`
-4. Both reset actions expose four real boolean params:
-   - `reset_scheduler`
-   - `reset_order_status`
-   - `reset_location`
-   - `reset_devices`
-5. The generated registry schema marks those reset params as JSON Schema `type: boolean`, not `object` or `string`, so the frontend can render checkboxes.
-6. `reset_auto` replaces the current public `reset` action. Unless a later compatibility request adds an alias, no old id-shaped public `reset` action remains.
-7. Goal defaults are:
-   - first three reset checkboxes `True`
-   - `reset_devices=False`
-8. `reset_manual(..., physical_cleanup_confirmed=False)` does not call any RPC reset method.
-9. `reset_auto()` with defaults calls:
-   - `scheduler_reset()`
-   - `reset_order_status()`
-   - `reset_location()`
-   - not `reset_devices()`
-10. `reset_auto(reset_devices=True)` also calls `reset_devices()`.
-11. `reset_order_status()` and `reset_location()` RPC wrappers send no `data` key.
-12. No reset path calls `take_out`.
-13. No reset path calls `refresh_material_cache`.
-
-## Non-Goals
-
-- Do not implement `take_out` in reset.
-- Do not refresh `material_cache` from reset.
-- Do not resolve order ids or location ids for reset.
-- Do not add Project/cache/browser cleanup routes.
-- Do not make `reset_devices` default-on.
-- Do not execute this plan during planning.

recipes/msgs/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: ros-humble-unilabos-msgs
-  version: 0.11.1
+  version: 0.11.2
 source:
   path: ../../unilabos_msgs
   target_directory: src

recipes/unilabos/recipe.yaml

@@ -1,6 +1,6 @@
 package:
   name: unilabos
-  version: "0.11.1"
+  version: "0.11.2"
 
 source:
   path: ../..

setup.py

@@ -4,7 +4,7 @@ package_name = 'unilabos'
 
 setup(
     name=package_name,
-    version='0.11.1',
+    version='0.11.2',
     packages=find_packages(),
     include_package_data=True,
     install_requires=['setuptools'],

unilabos/__init__.py

@@ -1 +1 @@
-__version__ = "0.11.1"
+__version__ = "0.11.2"

unilabos/app/model.py

@@ -59,6 +59,7 @@ class JobAddReq(BaseModel):
     task_id: str = Field(examples=["task_id"], description="task uuid (auto-generated if empty)", default="")
     job_id: str = Field(examples=["job_id"], description="goal uuid (auto-generated if empty)", default="")
     node_id: str = Field(examples=["node_id"], description="node uuid", default="")
+    notebook_id: str = Field(examples=["notebook_id"], description="notebook uuid", default="")
     server_info: dict = Field(
         examples=[{"send_timestamp": 1717000000.0}],
         description="server info (auto-generated if empty)",

unilabos/app/utils.py

@@ -10,29 +10,170 @@ import shutil
 import sys
 
 
+_PATCH_MARKER = "# UniLabOS DLL Patch"
+_PATCH_END_MARKER = "# End UniLabOS DLL Patch"
+
+# 75 = EX_TEMPFAIL: 临时失败、重试即可，避免与业务退出码冲突
+_RESTART_EXIT_CODE = 75
+
+
+def _build_dll_patch(lib_bin: str, preload_pyd: str = "") -> str:
+    """生成一段加在目标文件顶部的 DLL 加载补丁源码。
+
+    - 始终把 ``lib_bin`` 加入 DLL 搜索路径，并把 handle 挂在模块属性上，
+      防止 GC 清掉搜索路径（``os.add_dll_directory`` 的句柄被回收时
+      目录会被移除）。
+    - 可选地用 ``ctypes.CDLL`` 预加载一个 .pyd，把它的依赖 DLL 提前装入
+      进程内存，作为 ``rclpy._rclpy_pybind11`` 这类首次加载点的兜底。
+    """
+    # 用 repr() 序列化路径：Python 解析 repr 的结果会还原成原始字符串，
+    # 不需要也不能再叠加 raw-string 前缀（叠了反而会让 \\ 变成两个反斜杠）。
+    lines = [
+        _PATCH_MARKER,
+        "import os as _ulab_os",
+        f"_ulab_p = {lib_bin!r}",
+        'if hasattr(_ulab_os, "add_dll_directory") and _ulab_os.path.isdir(_ulab_p):',
+        "    try: _UNILAB_DLL_HANDLE = _ulab_os.add_dll_directory(_ulab_p)",
+        "    except Exception: _UNILAB_DLL_HANDLE = None",
+    ]
+    if preload_pyd:
+        lines.extend(
+            [
+                "import ctypes as _ulab_ctypes",
+                f"try: _ulab_ctypes.CDLL({preload_pyd!r})",
+                "except Exception: pass",
+            ]
+        )
+    lines.append(_PATCH_END_MARKER)
+    return "\n".join(lines) + "\n"
+
+
+def _apply_dll_patch(file_path: str, lib_bin: str, preload_pyd: str = "") -> bool:
+    """把 DLL 补丁前置到 ``file_path``。文件不存在或已打过补丁则返回 False。"""
+    if not os.path.isfile(file_path):
+        return False
+    with open(file_path, "r", encoding="utf-8") as f:
+        content = f.read()
+    if _PATCH_MARKER in content:
+        return False
+    shutil.copy2(file_path, file_path + ".bak")
+    with open(file_path, "w", encoding="utf-8") as f:
+        f.write(_build_dll_patch(lib_bin, preload_pyd) + content)
+    return True
+
+
+def _print_restart_banner(patched_files):
+    """打印重启提示并以 EX_TEMPFAIL 退出。
+
+    - 不使用 ANSI 颜色码：Windows 旧版 cmd / PowerShell 5 默认不开 VT 处理，
+      会把 ``\\033[1;33m`` 当做字面字符显示，反而让用户看不到正文。
+    - 同时写入 stderr 与 stdout：某些上层 launcher / supervisor 只重定向
+      其中一路，写两遍能保证用户至少看到一份。
+    - 写入前防御性把流切到 UTF-8 with replace：``main.py`` 里已经做过一次，
+      但本模块也可能被绕过 ``main.py`` 的代码路径直接 import；reconfigure
+      失败也只是退回 errors=replace，不影响整体流程。
+    """
+    if sys.platform == "win32":
+        for _stream in (sys.stdout, sys.stderr):
+            try:
+                _stream.reconfigure(encoding="utf-8", errors="replace")  # type: ignore[attr-defined]
+            except (AttributeError, OSError):
+                pass
+
+    bar = "#" * 78
+    files_lines = [f"[UniLabOS]   - {p}" for p in patched_files]
+    body = "\n".join(
+        [
+            "",
+            bar,
+            bar,
+            "##",
+            "##  [UniLabOS] Windows + conda 下检测到 DLL 加载失败，已自动打补丁。",
+            "##  [UniLabOS] DLL load failure detected on Windows + conda;",
+            "##  [UniLabOS] the following files have been auto-patched:",
+            "##",
+            *[f"##  {line}" for line in files_lines],
+            "##",
+            "##  [UniLabOS] 当前进程的 rclpy 状态已损坏，补丁需要在新进程才生效。",
+            "##  [UniLabOS] The current process is unusable; the patch only takes",
+            "##  [UniLabOS] effect on a fresh process.",
+            "##",
+            "##  >>> 请重新运行刚才的命令 / Please re-run the same command. <<<",
+            "##",
+            bar,
+            bar,
+            "",
+        ]
+    )
+
+    for stream in (sys.stderr, sys.stdout):
+        try:
+            stream.write(body)
+            stream.flush()
+        except Exception:
+            try:
+                print(body, file=stream)
+            except Exception:
+                pass
+
+    sys.exit(_RESTART_EXIT_CODE)
+
+
 def patch_rclpy_dll_windows():
-    """在 Windows + conda 环境下为 rclpy 打 DLL 加载补丁"""
+    """在 Windows + conda 环境下修复 rclpy / rosidl typesupport 的 DLL 加载。
+
+    背景：conda 安装的 ros 系列包，其原生扩展依赖 ``$CONDA_PREFIX/Library/bin``
+    下的 DLL；只有 conda 环境被正确激活、且 PATH 中含 ``Library/bin`` 时，
+    ``os.add_dll_directory`` 才能找到它们。当从快捷方式 / IDE / 子进程 /
+    没激活的 shell 启动 ``unilab`` 时，会出现 ``DLL load failed``。
+
+    本函数会:
+        1) 修补 ``rclpy/impl/implementation_singleton.py`` —— rclpy 自身的 C 扩展入口；
+        2) 修补 ``rpyutils/add_dll_directories.py`` —— 所有 ``*_s__rosidl_typesupport_c.pyd``
+           （``geometry_msgs`` / ``std_msgs`` / ``sensor_msgs`` 等）的统一加载入口。
+
+    打完补丁后**必须重启进程**才能生效（当前进程的 rclpy 已经发生过
+    ``ImportError``，子模块仍处于损坏状态）。因此函数会主动退出，并在
+    stdout/stderr 同时打印明显的重启提示，避免用户被后续报错淹没。
+    """
     if sys.platform != "win32" or not os.environ.get("CONDA_PREFIX"):
         return
+
     try:
-        import rclpy
+        import rclpy  # noqa: F401
 
         return
     except ImportError as e:
         if not str(e).startswith("DLL load failed"):
             return
+
     cp = os.environ["CONDA_PREFIX"]
-    impl = os.path.join(cp, "Lib", "site-packages", "rclpy", "impl", "implementation_singleton.py")
+    lib_bin = os.path.join(cp, "Library", "bin")
-    pyd = glob.glob(os.path.join(cp, "Lib", "site-packages", "rclpy", "_rclpy_pybind11*.pyd"))
+    site_packages = os.path.join(cp, "Lib", "site-packages")
-    if not os.path.exists(impl) or not pyd:
+    if not os.path.isdir(lib_bin):
         return
-    with open(impl, "r", encoding="utf-8") as f:
+
-        content = f.read()
+    patched = []
-    lib_bin = os.path.join(cp, "Library", "bin").replace("\\", "/")
+
-    patch = f'# UniLabOS DLL Patch\nimport os,ctypes\nos.add_dll_directory("{lib_bin}") if hasattr(os,"add_dll_directory") else None\ntry: ctypes.CDLL("{pyd[0].replace(chr(92),"/")}")\nexcept: pass\n# End Patch\n'
+    # 1) rclpy 自身的入口
-    shutil.copy2(impl, impl + ".bak")
+    rclpy_impl = os.path.join(site_packages, "rclpy", "impl", "implementation_singleton.py")
-    with open(impl, "w", encoding="utf-8") as f:
+    rclpy_pyd_matches = glob.glob(os.path.join(site_packages, "rclpy", "_rclpy_pybind11*.pyd"))
-        f.write(patch + content)
+    rclpy_pyd = rclpy_pyd_matches[0] if rclpy_pyd_matches else ""
+    if rclpy_pyd and _apply_dll_patch(rclpy_impl, lib_bin, preload_pyd=rclpy_pyd):
+        patched.append(rclpy_impl)
+
+    # 2) rpyutils —— 所有 rosidl typesupport pyd 的加载点；放在 rclpy 之后
+    #    例：geometry_msgs/geometry_msgs_s__rosidl_typesupport_c.pyd
+    rpyutils_dll = os.path.join(site_packages, "rpyutils", "add_dll_directories.py")
+    if _apply_dll_patch(rpyutils_dll, lib_bin):
+        patched.append(rpyutils_dll)
+
+    if not patched:
+        # 已经打过补丁但 rclpy 仍然加载失败：原因不是缺 DLL 搜索路径，
+        # 不要再次打补丁污染文件，让上层看到真实的 ImportError。
+        return
+
+    _print_restart_banner(patched)
 
 
 patch_rclpy_dll_windows()

unilabos/app/web/controller.py

@@ -320,6 +320,7 @@ def job_add(req: JobAddReq) -> JobData:
             action_name=action_name,
             task_id=task_id,
             job_id=job_id,
+            notebook_id=req.notebook_id,
             device_action_key=device_action_key,
         )
 

unilabos/app/ws_client.py

@@ -59,6 +59,7 @@ class QueueItem:
     action_name: str
     task_id: str
     job_id: str
+    notebook_id: str
     device_action_key: str
     next_run_time: float = 0  # 下次执行时间戳
     retry_count: int = 0  # 重试次数
@@ -71,6 +72,7 @@ class JobInfo:
     job_id: str
     task_id: str
     device_id: str
+    notebook_id: str
     action_name: str
     device_action_key: str
     status: JobStatus
@@ -539,7 +541,10 @@ class MessageProcessor:
                 self.reconnect_count += 1
                 backoff = WSConfig.reconnect_interval
                 logger.info(
-                    f"[MessageProcessor] 即将在 {backoff} 秒后重连 (已尝试 {self.reconnect_count}/{WSConfig.max_reconnect_attempts})"
+                    "[MessageProcessor] 即将在 %s 秒后重连 (已尝试 %s/%s)",
+                    backoff,
+                    self.reconnect_count,
+                    WSConfig.max_reconnect_attempts,
                 )
                 await asyncio.sleep(backoff)
             else:
@@ -703,6 +708,7 @@ class MessageProcessor:
         action_name = data.get("action_name", "")
         task_id = data.get("task_id", "")
         job_id = data.get("job_id", "")
+        notebook_id = data.get("notebook_id", "")
 
         if not all([device_id, action_name, task_id, job_id]):
             logger.error("[MessageProcessor] Missing required fields in query_action_state")
@@ -718,6 +724,7 @@ class MessageProcessor:
             job_id=job_id,
             task_id=task_id,
             device_id=device_id,
+            notebook_id=notebook_id,
             action_name=action_name,
             device_action_key=device_action_key,
             status=JobStatus.QUEUE,
@@ -732,13 +739,27 @@ class MessageProcessor:
         if can_start_immediately:
             # 可以立即开始
             await self._send_action_state_response(
-                device_id, action_name, task_id, job_id, "query_action_status", True, 0
+                device_id,
+                action_name,
+                task_id,
+                job_id,
+                "query_action_status",
+                True,
+                0,
+                notebook_id=notebook_id,
             )
             logger.trace(f"[MessageProcessor] Job {job_log} can start immediately")
         else:
             # 需要排队
             await self._send_action_state_response(
-                device_id, action_name, task_id, job_id, "query_action_status", False, 10
+                device_id,
+                action_name,
+                task_id,
+                job_id,
+                "query_action_status",
+                False,
+                10,
+                notebook_id=notebook_id,
             )
             logger.trace(f"[MessageProcessor] Job {job_log} queued")
 
@@ -768,6 +789,7 @@ class MessageProcessor:
                         job_id=req.job_id,
                         task_id=req.task_id,
                         device_id=req.device_id,
+                        notebook_id=req.notebook_id,
                         action_name=action_name,
                         device_action_key=device_action_key,
                         status=JobStatus.QUEUE,
@@ -775,11 +797,16 @@ class MessageProcessor:
                         always_free=True,
                     )
                     self.device_manager.add_queue_request(job_info)
+                    existing_job = job_info
                     logger.info(f"[MessageProcessor] Job {job_log} always_free, auto-registered from direct job_start")
                 else:
                     logger.error(f"[MessageProcessor] Job {job_log} not registered (missing query_action_state)")
                     return
 
+            if existing_job and req.notebook_id and not existing_job.notebook_id:
+                existing_job.notebook_id = req.notebook_id
+            notebook_id = req.notebook_id or (existing_job.notebook_id if existing_job else "")
+
             success = self.device_manager.start_job(req.job_id)
             if not success:
                 logger.error(f"[MessageProcessor] Failed to start job {job_log}")
@@ -795,6 +822,7 @@ class MessageProcessor:
                 action_name=req.action,
                 task_id=req.task_id,
                 job_id=req.job_id,
+                notebook_id=notebook_id,
                 device_action_key=device_action_key,
             )
 
@@ -834,6 +862,7 @@ class MessageProcessor:
                             "job_id": req.job_id,
                             "task_id": req.task_id,
                             "device_id": req.device_id,
+                            "notebook_id": queue_item.notebook_id,
                             "action_name": req.action,
                             "status": "failed",
                             "feedback_data": {},
@@ -855,6 +884,7 @@ class MessageProcessor:
                             "query_action_status",
                             True,
                             0,
+                            notebook_id=next_job.notebook_id,
                         )
                         next_job_log = format_job_log(
                             next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
@@ -1101,7 +1131,15 @@ class MessageProcessor:
         logger.info(f"[MessageProcessor] Restart cleanup scheduled")
 
     async def _send_action_state_response(
-        self, device_id: str, action_name: str, task_id: str, job_id: str, typ: str, free: bool, need_more: int
+        self,
+        device_id: str,
+        action_name: str,
+        task_id: str,
+        job_id: str,
+        typ: str,
+        free: bool,
+        need_more: int,
+        notebook_id: str = "",
     ):
         """发送动作状态响应"""
         message = {
@@ -1112,6 +1150,7 @@ class MessageProcessor:
                 "action_name": action_name,
                 "task_id": task_id,
                 "job_id": job_id,
+                "notebook_id": notebook_id,
                 "free": free,
                 "need_more": need_more + 1,
             },
@@ -1194,6 +1233,7 @@ class QueueProcessor:
                             action_name=timeout_job.action_name,
                             task_id=timeout_job.task_id,
                             job_id=timeout_job.job_id,
+                            notebook_id=timeout_job.notebook_id,
                             device_action_key=timeout_job.device_action_key,
                         )
                         # 发布超时失败状态，这会触发正常的job完成流程
@@ -1252,6 +1292,7 @@ class QueueProcessor:
                     "action_name": job_info.action_name,
                     "task_id": job_info.task_id,
                     "job_id": job_info.job_id,
+                    "notebook_id": job_info.notebook_id,
                     "free": False,
                     "need_more": 10 + 1,
                 },
@@ -1291,6 +1332,7 @@ class QueueProcessor:
                     "action_name": job_info.action_name,
                     "task_id": job_info.task_id,
                     "job_id": job_info.job_id,
+                    "notebook_id": job_info.notebook_id,
                     "free": False,
                     "need_more": 10 + 1,
                 },
@@ -1336,12 +1378,15 @@ class QueueProcessor:
                     "action_name": next_job.action_name,
                     "task_id": next_job.task_id,
                     "job_id": next_job.job_id,
+                    "notebook_id": next_job.notebook_id,
                     "free": True,
                     "need_more": 0,
                 },
             }
             self.message_processor.send_message(message)
-            # next_job_log = format_job_log(next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name)
+            # next_job_log = format_job_log(
+            #     next_job.job_id, next_job.task_id, next_job.device_id, next_job.action_name
+            # )
             # logger.debug(f"[QueueProcessor] Notified next job {next_job_log} can start")
 
             # 立即触发下一轮状态检查
@@ -1510,6 +1555,7 @@ class WebSocketClient(BaseCommunicationClient):
                 "job_id": item.job_id,
                 "task_id": item.task_id,
                 "device_id": item.device_id,
+                "notebook_id": item.notebook_id,
                 "action_name": item.action_name,
                 "status": status,
                 "feedback_data": feedback_data,

unilabos/devices/workstation/bioyond_studio/bioyond_rpc.py

@@ -415,25 +415,21 @@ class BioyondV1RPC(BaseRequest):
             return {}
         return response.get("data", {})
 
-    def reset_location(self, location_id: Optional[str] = None) -> int:
+    def reset_location(self, location_id: str) -> int:
         """复位库位
 
-        现场实测 ``POST /api/lims/storage/reset-location`` 不传 ``data`` 即可成功
-        （见 ``temp_benyao/peptide/_findings/2026-05-21_1615_remaining_resets_no_data_live.md``），
-        因此默认无 ``data`` 字段；保留 ``location_id`` 仅为兼容旧调用，传入会被忽略。
-
         参数:
-            location_id: 兼容入参，已被忽略；新逻辑不再以 location 为粒度复位。
+            location_id: 库位ID
 
         返回值:
             int: 成功返回1，失败返回0
         """
-        del location_id
         response = self.post(
             url=f'{self.host}/api/lims/storage/reset-location',
             params={
                 "apiKey": self.api_key,
                 "requestTime": self.get_current_time_iso8601(),
+                "data": location_id,
             })
         if not response or response['code'] != 1:
             return 0
@@ -783,49 +779,6 @@ class BioyondV1RPC(BaseRequest):
 
         return response.get("data", {})
 
-    def take_out(
-        self,
-        order_id: str,
-        preintake_ids: list[str] | None = None,
-        material_ids: list[str] | None = None,
-    ) -> dict:
-        """取出订单关联通量/物料
-
-        参数:
-            order_id: 订单ID
-            preintake_ids: 通量ID列表，可为空
-            material_ids: 物料ID列表，可为空
-
-        返回值:
-            dict: 服务端响应包，失败返回空字典
-        """
-        if not order_id:
-            self._logger.error("取出订单关联通量/物料错误: 缺少订单ID")
-            return {}
-
-        params = {
-            "orderId": order_id,
-            "preintakeIds": list(preintake_ids or []),
-            "materialIds": list(material_ids or []),
-        }
-
-        response = self.post(
-            url=f'{self.host}/api/lims/order/take-out',
-            params={
-                "apiKey": self.api_key,
-                "requestTime": self.get_current_time_iso8601(),
-                "data": params,
-            })
-
-        if not response:
-            return {}
-
-        if response['code'] != 1:
-            self._logger.error(f"取出订单关联通量/物料错误: {response.get('message', '')}")
-            return response
-
-        return response
-
     def cancel_order(self, json_str: str) -> bool:
         """取消指定任务
 
@@ -933,25 +886,21 @@ class BioyondV1RPC(BaseRequest):
             return {}
         return response.get("data", {})
 
-    def reset_order_status(self, order_id: Optional[str] = None) -> int:
+    def reset_order_status(self, order_id: str) -> int:
         """复位订单状态
 
-        现场实测 ``POST /api/lims/order/reset-order-status`` 不传 ``data`` 即可成功
-        （见 ``temp_benyao/peptide/_findings/2026-05-21_1613_reset_order_status_no_data_live.md``），
-        因此默认无 ``data`` 字段；保留 ``order_id`` 仅为兼容旧调用，传入会被忽略。
-
         参数:
-            order_id: 兼容入参，已被忽略；新逻辑不再以单订单为粒度复位。
+            order_id: 订单ID
 
         返回值:
             int: 成功返回1，失败返回0
         """
-        del order_id
         response = self.post(
             url=f'{self.host}/api/lims/order/reset-order-status',
             params={
                 "apiKey": self.api_key,
                 "requestTime": self.get_current_time_iso8601(),
+                "data": order_id,
             })
         if not response or response['code'] != 1:
             return 0

unilabos/devices/workstation/bioyond_studio/debug_call_log.py

@@ -1,459 +0,0 @@
-"""Per-action raw call/response log for Bioyond stations.
-
-When a debug session is active, ``wrap_rpc_http`` replaces a ``BioyondV1RPC``
-instance's ``post`` / ``get`` methods with closures that perform the HTTP
-transport themselves, capture the request/response details, and append a record
-to the active session before returning exactly what ``BaseRequest`` would have
-returned. Outside of an active session the wrapped method delegates to the
-original (unwrapped) implementation, leaving non-debug behavior intact.
-
-The session writes a Markdown file under ``out_dir`` mirroring the format of
-``bioyond_debug_records/2026-04-30_160316_day3_samplefile_only_raw_calls.md``
-minus the "Raw Payload Argument" section.
-
-This module has no dependency on ``BioyondV1RPC`` itself; the only contract is
-that the wrapped instance descends from ``BaseRequest`` (i.e. has a logger
-returned by ``self.get_logger()``).
-"""
-
-from __future__ import annotations
-
-import contextvars
-import copy
-import inspect
-import json
-import re
-from contextlib import contextmanager
-from dataclasses import dataclass, field
-from datetime import datetime
-from pathlib import Path
-from typing import Any, Iterator, List, Optional
-
-import requests
-
-__all__ = [
-    "CallRecord",
-    "CallLogContext",
-    "session",
-    "wrap_rpc_http",
-    "active_session",
-]
-
-
-_DEFAULT_TIMEOUT_GET = 30
-_DEFAULT_TIMEOUT_POST = 120
-
-
-@dataclass
-class CallRecord:
-    """One captured HTTP call inside a debug session."""
-
-    index: int
-    method: str
-    url: str
-    path: str
-    source: str
-    transport: str
-    http_status: Optional[int]
-    request_body: Any
-    response_body: Any
-    error: Optional[str] = None
-
-
-@dataclass
-class CallLogContext:
-    """State for a single ``session()`` block.
-
-    A session lazily creates its file on the first appended record. Actions
-    that abort before any RPC produce no file.
-    """
-
-    action: str
-    out_dir: Path
-    started_at: datetime
-    calls: List[CallRecord] = field(default_factory=list)
-    file_path: Optional[Path] = None
-
-    def append(self, record: CallRecord) -> None:
-        record.index = len(self.calls) + 1
-        self.calls.append(record)
-        self._write_file()
-
-    # -- file I/O -------------------------------------------------------------
-
-    def _resolve_file_path(self) -> Path:
-        if self.file_path is not None:
-            return self.file_path
-        timestamp = self.started_at.strftime("%Y-%m-%d_%H%M%S")
-        slug = _slugify_action(self.action)
-        candidate = self.out_dir / f"{timestamp}_{slug}_raw_calls.md"
-        suffix = 2
-        while candidate.exists():
-            candidate = (
-                self.out_dir
-                / f"{timestamp}_{slug}_raw_calls_{suffix:02d}.md"
-            )
-            suffix += 1
-        self.file_path = candidate
-        return self.file_path
-
-    def _write_file(self) -> None:
-        path = self._resolve_file_path()
-        path.parent.mkdir(parents=True, exist_ok=True)
-        path.write_text(_render_markdown(self), encoding="utf-8")
-
-
-_active_session: contextvars.ContextVar[Optional[CallLogContext]] = (
-    contextvars.ContextVar("_active_session", default=None)
-)
-
-
-def active_session() -> Optional[CallLogContext]:
-    """Return the currently active :class:`CallLogContext`, if any."""
-    return _active_session.get()
-
-
-@contextmanager
-def session(action: str, out_dir: Path) -> Iterator[CallLogContext]:
-    """Open a per-action debug session.
-
-    On entry, sets the module-level ``_active_session`` ContextVar so any
-    ``wrap_rpc_http``'d clients on the same thread/task record their calls.
-    On exit, the previous active session (if any) is restored.
-    """
-    ctx = CallLogContext(
-        action=str(action),
-        out_dir=Path(out_dir),
-        started_at=datetime.now(),
-    )
-    token = _active_session.set(ctx)
-    try:
-        yield ctx
-    finally:
-        _active_session.reset(token)
-
-
-def wrap_rpc_http(rpc: Any) -> None:
-    """Idempotently wrap ``rpc.post`` / ``rpc.get``.
-
-    When a session is active (``_active_session.get() is not None``), the
-    wrapped methods perform the HTTP call themselves with ``requests`` and
-    record the call before returning the same value ``BaseRequest`` would have
-    returned. When no session is active, the wrapped methods delegate to the
-    original implementation, preserving stock ``BaseRequest`` behavior.
-
-    Calling this twice on the same instance is a no-op. The wrapper does not
-    alter ``rpc.form_post`` (no Sirna action calls it as of plan 3).
-    """
-    if rpc is None:
-        return
-    if getattr(rpc, "_debug_call_log_wrapped", False):
-        return
-
-    rpc._orig_post = rpc.post
-    rpc._orig_get = rpc.get
-
-    def _wrapped_post(
-        url: str,
-        params: Any = None,
-        files: Any = None,
-        headers: Optional[dict] = None,
-    ) -> Any:
-        ctx = _active_session.get()
-        if ctx is None:
-            kwargs = {}
-            if params is not None:
-                kwargs["params"] = params
-            if files is not None:
-                kwargs["files"] = files
-            if headers is not None:
-                kwargs["headers"] = headers
-            return rpc._orig_post(url, **kwargs)
-        effective_params = params if params is not None else {}
-        effective_headers = (
-            headers
-            if headers is not None
-            else {"Content-Type": "application/json"}
-        )
-        source = _detect_source(rpc)
-        request_body = _redact(effective_params)
-        record = CallRecord(
-            index=0,
-            method="POST",
-            url=str(url),
-            path=_url_path(url),
-            source=source,
-            transport=_pick_transport(effective_params),
-            http_status=None,
-            request_body=request_body,
-            response_body=None,
-            error=None,
-        )
-        return_value: Any = None
-        try:
-            response = requests.post(
-                url,
-                data=json.dumps(effective_params) if effective_params else None,
-                headers=effective_headers,
-                timeout=_DEFAULT_TIMEOUT_POST,
-                files=files,
-            )
-        except Exception as exc:  # pragma: no cover - delegated to logger
-            record.error = f"transport error: {exc}"
-            try:
-                rpc.get_logger().error(f"Request ERROR: {exc}")
-            except Exception:
-                pass
-            ctx.append(record)
-            return None
-
-        record.http_status = response.status_code
-        record.response_body, parse_error = _decode_response_body(response)
-        try:
-            rpc.get_logger().debug(
-                f"Request >>> : {response.request.body} "
-                f"{response.status_code} {response.text}"
-            )
-        except Exception:
-            pass
-
-        if response.status_code == 200:
-            if parse_error is not None:
-                record.error = f"json parse error: {parse_error}"
-                return_value = None
-            else:
-                return_value = record.response_body
-        else:
-            record.error = f"HTTP {response.status_code}: {response.text}"
-            try:
-                rpc.get_logger().error(
-                    f"Request ERROR: ('Request ERROR:', {response.text!r})"
-                )
-            except Exception:
-                pass
-            return_value = None
-
-        ctx.append(record)
-        return return_value
-
-    def _wrapped_get(
-        url: str,
-        params: Any = None,
-        headers: Optional[dict] = None,
-    ) -> Any:
-        ctx = _active_session.get()
-        if ctx is None:
-            kwargs = {}
-            if params is not None:
-                kwargs["params"] = params
-            if headers is not None:
-                kwargs["headers"] = headers
-            return rpc._orig_get(url, **kwargs)
-        effective_params = params if params is not None else {}
-        effective_headers = (
-            headers
-            if headers is not None
-            else {"Content-Type": "application/json"}
-        )
-        source = _detect_source(rpc)
-        request_body = _redact(effective_params)
-        record = CallRecord(
-            index=0,
-            method="GET",
-            url=str(url),
-            path=_url_path(url),
-            source=source,
-            transport="params",
-            http_status=None,
-            request_body=request_body,
-            response_body=None,
-            error=None,
-        )
-        return_value: Any = None
-        try:
-            response = requests.get(
-                url,
-                params=effective_params,
-                headers=effective_headers,
-                timeout=_DEFAULT_TIMEOUT_GET,
-            )
-        except Exception as exc:  # pragma: no cover - delegated to logger
-            record.error = f"transport error: {exc}"
-            try:
-                rpc.get_logger().error(f"Request ERROR: {exc}")
-            except Exception:
-                pass
-            ctx.append(record)
-            return None
-
-        record.http_status = response.status_code
-        record.response_body, parse_error = _decode_response_body(response)
-        try:
-            rpc.get_logger().debug(
-                f"Request >>> : {effective_params} "
-                f"{response.status_code} {response.text}"
-            )
-        except Exception:
-            pass
-
-        if response.status_code == 200:
-            if parse_error is not None:
-                record.error = f"json parse error: {parse_error}"
-                return_value = None
-            else:
-                return_value = record.response_body
-
-        ctx.append(record)
-        return return_value
-
-    rpc.post = _wrapped_post
-    rpc.get = _wrapped_get
-    rpc._debug_call_log_wrapped = True
-
-
-# ---------------------------------------------------------------------------
-# Helpers
-# ---------------------------------------------------------------------------
-
-
-_URL_PATH_RE = re.compile(r"https?://[^/]+(/.*)?$")
-_SLUG_RE = re.compile(r"[^A-Za-z0-9._-]+")
-
-
-def _slugify_action(action: str) -> str:
-    slug = _SLUG_RE.sub("_", str(action)).strip("_")
-    return slug or "action"
-
-
-def _url_path(url: Any) -> str:
-    text = str(url or "")
-    match = _URL_PATH_RE.match(text)
-    if match and match.group(1):
-        return match.group(1)
-    if text.startswith("/"):
-        return text
-    return text
-
-
-def _pick_transport(params: Any) -> str:
-    if isinstance(params, dict) and "data" in params:
-        return "data"
-    return "params"
-
-
-def _detect_source(rpc: Any) -> str:
-    """Walk the call stack to find the outermost frame whose ``self`` is rpc."""
-    try:
-        stack = inspect.stack()
-    except Exception:
-        return ""
-    candidate = ""
-    try:
-        for frame_info in stack:
-            frame = frame_info.frame
-            if frame.f_locals.get("self", None) is rpc:
-                candidate = frame_info.function
-        return candidate
-    finally:
-        del stack
-
-
-def _redact(params: Any) -> Any:
-    """Return a copy of ``params`` with ``apiKey`` redacted."""
-    try:
-        cloned = copy.deepcopy(params)
-    except Exception:
-        return params
-    _redact_in_place(cloned)
-    return cloned
-
-
-def _redact_in_place(value: Any) -> None:
-    if isinstance(value, dict):
-        for key in list(value.keys()):
-            if isinstance(key, str) and key.lower() == "apikey":
-                value[key] = "<redacted>"
-            else:
-                _redact_in_place(value[key])
-    elif isinstance(value, list):
-        for item in value:
-            _redact_in_place(item)
-
-
-def _decode_response_body(response: Any) -> tuple[Any, Optional[str]]:
-    """Best-effort response decoding used for both record + return value."""
-    text = getattr(response, "text", "")
-    try:
-        return response.json(), None
-    except Exception as exc:
-        if text:
-            return {"raw_text": text}, str(exc)
-        return None, str(exc)
-
-
-# ---------------------------------------------------------------------------
-# Markdown rendering
-# ---------------------------------------------------------------------------
-
-
-def _render_markdown(ctx: CallLogContext) -> str:
-    title = f"# {ctx.action} Raw Call/Response Log"
-    parts: List[str] = [title, ""]
-    parts.append("## LIMS Calls")
-    parts.append("")
-    parts.append("| # | Method | Path | Source | HTTP |")
-    parts.append("|---|---|---|---|---|")
-    for record in ctx.calls:
-        anchor = _row_anchor(record)
-        http = (
-            f"`{record.http_status}`"
-            if record.http_status is not None
-            else "`-`"
-        )
-        parts.append(
-            f"| [{record.index}](#{anchor}) | `{record.method}` | "
-            f"`{record.path}` | `{record.source}` | {http} |"
-        )
-    parts.append("")
-
-    for record in ctx.calls:
-        parts.append(f"## {record.index} {record.method} {record.path}")
-        parts.append("")
-        parts.append(f"- Source: `{record.source}`")
-        parts.append(f"- Transport: `{record.transport}`")
-        if record.http_status is not None:
-            parts.append(f"- HTTP status: `{record.http_status}`")
-        else:
-            parts.append("- HTTP status: `-`")
-        if record.error:
-            parts.append(f"- Error: {record.error}")
-        parts.append("")
-        parts.append("### Request Body")
-        parts.append("")
-        parts.append("```json")
-        parts.append(_to_json_block(record.request_body))
-        parts.append("```")
-        parts.append("")
-        parts.append("### Response Body")
-        parts.append("")
-        parts.append("```json")
-        parts.append(_to_json_block(record.response_body))
-        parts.append("```")
-        parts.append("")
-
-    return "\n".join(parts).rstrip() + "\n"
-
-
-def _row_anchor(record: CallRecord) -> str:
-    """Build a GitHub-style anchor matching ``## N METHOD /path``."""
-    raw = f"{record.index}-{record.method}-{record.path}"
-    raw = raw.lower()
-    raw = re.sub(r"[^a-z0-9]+", "-", raw)
-    return raw.strip("-")
-
-
-def _to_json_block(value: Any) -> str:
-    try:
-        return json.dumps(value, ensure_ascii=False, indent=2, sort_keys=True)
-    except TypeError:
-        return json.dumps(str(value), ensure_ascii=False, indent=2)

unilabos/devices/workstation/bioyond_studio/peptide_station/__init__.py

@@ -1,3 +0,0 @@
-from .peptide_station import BioyondPeptideStation, fetch_workflow_list, load_peptide_config
-
-__all__ = ["BioyondPeptideStation", "fetch_workflow_list", "load_peptide_config"]

unilabos/devices/workstation/bioyond_studio/station.py

@@ -7,7 +7,6 @@ Bioyond Workstation Implementation
 import time
 import traceback
 import threading
-from contextlib import contextmanager
 from datetime import datetime
 from typing import Dict, Any, List, Optional, Union
 import json
@@ -15,7 +14,6 @@ from pathlib import Path
 
 from unilabos.devices.workstation.workstation_base import WorkstationBase, ResourceSynchronizer
 from unilabos.devices.workstation.bioyond_studio.bioyond_rpc import BioyondV1RPC
-from unilabos.devices.workstation.bioyond_studio import debug_call_log
 from unilabos.registry.placeholder_type import ResourceSlot, DeviceSlot
 from unilabos.resources.warehouse import WareHouse
 from unilabos.utils.log import logger
@@ -56,17 +54,13 @@ class ConnectionMonitor:
     def _monitor_loop(self):
         while self._running:
             try:
-                # 使用轻量级调度状态接口检查连接，避免启动时打印完整物料类型列表。
+                # 使用 lightweight API 检查连接
-                result = self.workstation.hardware_interface.scheduler_status()
+                # query_matial_type_list 是比较快的查询
+                start_time = time.time()
+                result = self.workstation.hardware_interface.material_type_list()
 
                 status = "online" if result else "offline"
-                if status == "online":
+                msg = "Connection established" if status == "online" else "Failed to get material type list"
-                    msg = (
-                        f"Scheduler status={result.get('status')}, "
-                        f"hasTask={result.get('hasTask')}"
-                    )
-                else:
-                    msg = "Failed to get scheduler status"
 
                 if status != self._last_status:
                     logger.info(f"Bioyond连接状态变更: {self._last_status} -> {status}")
@@ -180,8 +174,6 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
                 logger.warning("从Bioyond获取的物料数据为空")
                 return False
 
-            self._update_material_cache_from_stock(all_bioyond_data)
-
             # 转换为UniLab格式
             unilab_resources = resource_bioyond_to_plr(
                 all_bioyond_data,
@@ -195,29 +187,6 @@ class BioyondResourceSynchronizer(ResourceSynchronizer):
             logger.error(f"从Bioyond同步物料数据失败: {e}")
             return False
 
-    def _update_material_cache_from_stock(self, materials: List[Dict[str, Any]]) -> None:
-        """用本次库存查询结果同步 RPC 的 name -> material id 缓存。"""
-        material_cache = getattr(self.bioyond_api_client, "material_cache", None)
-        if not isinstance(material_cache, dict):
-            return
-
-        before_count = len(material_cache)
-        for material in materials:
-            material_name = material.get("name")
-            material_id = material.get("id")
-            if material_name and material_id:
-                material_cache[material_name] = material_id
-
-            for detail_material in material.get("detail", []) or []:
-                detail_name = detail_material.get("name")
-                detail_id = detail_material.get("detailMaterialId") or detail_material.get("id")
-                if detail_name and detail_id:
-                    material_cache[detail_name] = detail_id
-
-        logger.debug(
-            f"已用Bioyond库存同步物料缓存: {before_count} -> {len(material_cache)}"
-        )
-
     def sync_to_external(self, resource: Any) -> bool:
         """将本地物料数据变更同步到Bioyond系统"""
         try:
@@ -709,70 +678,6 @@ class BioyondWorkstation(WorkstationBase):
     集成Bioyond物料管理的工作站实现
     """
 
-    # 子类（如 sirna / peptide）覆写以指定默认 raw-call 日志目录。
-    # 路径相对仓库根；为 None 时若 debug_log=True 仍会写入临时位置。
-    _DEBUG_LOG_DEFAULT_DIR: Optional[str] = None
-
-    def _create_bioyond_rpc(self, config: Dict[str, Any]) -> BioyondV1RPC:
-        """创建 Bioyond RPC 客户端并应用调试包装。
-
-        所有创建 ``BioyondV1RPC`` 的路径（饿汉初始化、Sirna 延迟初始化、
-        以及未来的前端重新配置路径）都应通过该 helper，
-        以确保 debug_log 包装与命名/日志策略保持一致。
-        """
-        rpc = BioyondV1RPC(config)
-        debug_call_log.wrap_rpc_http(rpc)
-        return rpc
-
-    def _set_hardware_interface(self, rpc: BioyondV1RPC) -> BioyondV1RPC:
-        """将已构造的 RPC 客户端设置到 ``self.hardware_interface``，并应用调试包装。"""
-        debug_call_log.wrap_rpc_http(rpc)
-        self.hardware_interface = rpc
-        return rpc
-
-    def _debug_log_resolved_dir(self) -> Path:
-        """解析 ``debug_log_dir`` 为绝对路径。"""
-        configured = (getattr(self, "bioyond_config", {}) or {}).get("debug_log_dir")
-        default_dir = getattr(self, "_DEBUG_LOG_DEFAULT_DIR", None)
-        candidate = configured or default_dir or "bioyond_debug_records"
-        path = Path(candidate)
-        if not path.is_absolute():
-            repo_root = Path(__file__).resolve().parents[4]
-            path = repo_root / path
-        return path
-
-    def _ensure_debug_log_state(self) -> None:
-        """从 ``self.bioyond_config`` 派生 ``_debug_log_enabled`` / ``_debug_log_dir``。
-
-        每次进入 ``_debug_call_session`` 时都重新解析，以兼容前端在运行时
-        修改 ``bioyond_config['debug_log']`` 或目录的场景；同时也容忍
-        子类（如 Sirna 延迟初始化）在 ``__init__`` 早期未触发本方法。
-        """
-        cfg = getattr(self, "bioyond_config", {}) or {}
-        self._debug_log_enabled = bool(cfg.get("debug_log"))
-        self._debug_log_dir = self._debug_log_resolved_dir()
-
-    @contextmanager
-    def _debug_call_session(self, action_name: str):
-        """在 action 体外加一层 debug 会话上下文。
-
-        - ``debug_log`` 关闭时是空上下文，开销为 0。
-        - ``debug_log`` 开启时进入 :func:`debug_call_log.session`，所有
-          已被 ``wrap_rpc_http`` 包装过的 RPC 客户端都会捕获本次 action
-          产生的 HTTP 调用并写入 Markdown 文件。
-
-        子类（如 ``end_experiment``、``manual_unload`` 等）可以直接在
-        action 体里以 ``with self._debug_call_session("action_name"):`` 包裹。
-        """
-        cfg = getattr(self, "bioyond_config", {}) or {}
-        enabled = bool(cfg.get("debug_log"))
-        if not enabled:
-            yield None
-            return
-        out_dir = BioyondWorkstation._debug_log_resolved_dir(self)
-        with debug_call_log.session(action_name, out_dir) as ctx:
-            yield ctx
-
     def _publish_task_status(
         self,
         task_id: str,
@@ -957,7 +862,7 @@ class BioyondWorkstation(WorkstationBase):
             self.bioyond_config = {}
             print("警告: 未提供 bioyond_config，请确保在 JSON 配置文件中提供完整配置")
 
-        self.hardware_interface = self._create_bioyond_rpc(self.bioyond_config)
+        self.hardware_interface = BioyondV1RPC(self.bioyond_config)
 
     def resource_tree_add(self, resources: List[ResourcePLR]) -> None:
         """添加资源到资源树并更新ROS节点
@@ -1433,7 +1338,11 @@ class BioyondWorkstation(WorkstationBase):
             if self.hardware_interface:
                 self.hardware_interface.scheduler_reset()
 
-            # 重新同步资源，并用同一次库存查询结果更新物料缓存
+            # 刷新物料缓存
+            if self.hardware_interface:
+                self.hardware_interface.refresh_material_cache()
+
+            # 重新同步资源
             if self.resource_synchronizer:
                 self.resource_synchronizer.sync_from_external()
 

unilabos/resources/bioyond/__init__.py

@@ -1,9 +0,0 @@
-try:
-    from . import peptide_materials  # noqa: F401  ensure @resource classes are importable for PLR deserialize
-except Exception:  # pragma: no cover - 允许轻量环境导入非资源辅助函数
-    peptide_materials = None  # type: ignore[assignment]
-
-try:
-    from . import sirna_materials  # noqa: F401  ensure @resource classes are importable for PLR deserialize
-except Exception:  # pragma: no cover - 允许轻量环境导入非资源辅助函数
-    sirna_materials = None  # type: ignore[assignment]

unilabos/resources/bioyond/decks.py

@@ -1,8 +1,6 @@
 from os import name
-
 from pylabrobot.resources import Deck, Coordinate, Rotation
 
-from unilabos.registry.decorators import resource
 from unilabos.resources.bioyond.YB_warehouses import (
     bioyond_warehouse_1x4x4,
     bioyond_warehouse_1x4x4_right,  # 新增：右侧仓库 (A05～D08)
@@ -25,11 +23,6 @@ from unilabos.resources.bioyond.YB_warehouses import (
 from unilabos.resources.bioyond.warehouses import (
     bioyond_warehouse_tipbox_storage_left,   # 新增：Tip盒堆栈(左)
     bioyond_warehouse_tipbox_storage_right,  # 新增：Tip盒堆栈(右)
-    bioyond_warehouse_sirna_automation_stack,
-    bioyond_warehouse_sirna_centrifuge_balance_plate_stack,
-    bioyond_warehouse_sirna_g3_liquid_handler,
-    bioyond_warehouse_numeric_stack,  # 新增：数字编码堆栈 (用于多肽站)
-    bioyond_warehouse_live_grid,
 )
 
 
@@ -108,83 +101,6 @@ class BIOYOND_PolymerPreparationStation_Deck(Deck):
         for warehouse_name, warehouse in self.warehouses.items():
             self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
 
-@resource(
-    id="BIOYOND_SirnaStation_Deck",
-    category=["deck"],
-    description="BIOYOND 小核酸工作站 Deck",
-    icon="配液站.webp",
-)
-class BIOYOND_SirnaStation_Deck(Deck):
-    WAREHOUSE_BIOYOND_AXIS = {
-        "G3移液站": "xy_col_row",
-        "自动化堆栈": "xy_col_row",
-        "离心机配平板堆栈": "xy_col_row",
-    }
-    WAREHOUSE_BIOYOND_KEY_AXIS = {
-        "G3移液站": "col_row",
-        "自动化堆栈": "col_row",
-        "离心机配平板堆栈": "col_row",
-    }
-    # Bioyond warehouse UUID -> 本地仓库名称 映射。
-    # 留空时由配置（station config 的 ``warehouse_bioyond_ids``）注入。
-    # graph 节点也可在 deck.config.warehouse_bioyond_ids 覆盖。
-    WAREHOUSE_BIOYOND_IDS: dict = {}
-
-    def __init__(
-        self,
-        name: str = "SirnaStation_Deck",
-        size_x: float = 2700.0,
-        size_y: float = 1080.0,
-        size_z: float = 1500.0,
-        category: str = "deck",
-        setup: bool = False,
-        warehouse_bioyond_ids: dict | None = None,
-        **kwargs,
-    ) -> None:
-        super().__init__(name=name, size_x=size_x, size_y=size_y, size_z=size_z)
-        # 按需写入实例级覆盖；保留默认空 mapping，避免改动模型常量。
-        self.warehouse_bioyond_ids: dict = dict(self.WAREHOUSE_BIOYOND_IDS)
-        if warehouse_bioyond_ids:
-            self.warehouse_bioyond_ids.update(warehouse_bioyond_ids)
-        if setup:
-            self.setup()
-
-    @classmethod
-    def deserialize(cls, data: dict, allow_marshal: bool = False):
-        if data.get("children") and data.get("setup") is True:
-            data = data.copy()
-            data["setup"] = False
-        result = super().deserialize(data, allow_marshal=allow_marshal)
-        result._ensure_sirna_warehouse_metadata()
-        return result
-
-    def _ensure_sirna_warehouse_metadata(self) -> None:
-        for child in getattr(self, "children", []):
-            name = getattr(child, "name", "")
-            axis = self.WAREHOUSE_BIOYOND_AXIS.get(name)
-            if axis and not hasattr(child, "bioyond_axis"):
-                child.bioyond_axis = axis
-            key_axis = self.WAREHOUSE_BIOYOND_KEY_AXIS.get(name)
-            if key_axis and not hasattr(child, "bioyond_key_axis"):
-                child.bioyond_key_axis = key_axis
-
-    def setup(self) -> None:
-        # Sirna 读接口 /api/storage/location/locations-by-type 返回完整固定堆栈清单。
-        # LIMS 在库物料接口仍使用相同的 自动化堆栈 名称和数字库位编码。
-        self.warehouses = {
-            "G3移液站": bioyond_warehouse_sirna_g3_liquid_handler(),
-            "自动化堆栈": bioyond_warehouse_sirna_automation_stack(),
-            "离心机配平板堆栈": bioyond_warehouse_sirna_centrifuge_balance_plate_stack(),
-        }
-        self.warehouse_locations = {
-            "G3移液站": Coordinate(0.0, 0.0, 0.0),
-            "自动化堆栈": Coordinate(220.0, 0.0, 0.0),
-            "离心机配平板堆栈": Coordinate(1740.0, 0.0, 0.0),
-        }
-
-        for warehouse_name, warehouse in self.warehouses.items():
-            self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
-
 class BIOYOND_YB_Deck(Deck):
     def __init__(
         self,
@@ -234,207 +150,12 @@ class BIOYOND_YB_Deck(Deck):
         for warehouse_name, warehouse in self.warehouses.items():
             self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
 
-@resource(
-    id="BIOYOND_PeptideStation_Deck",
-    category=["deck"],
-    description="BIOYOND 多肽工作站 Deck",
-    icon="preparation_station.webp",
-)
-class BIOYOND_PeptideStation_Deck(Deck):
-    WAREHOUSE_BIOYOND_AXIS = dict.fromkeys(
-        [
-            "自动化堆栈",
-            "低温冰箱仓库",
-            "Tecan移液站库",
-            "G3移液站库",
-            "IDOT移液站库",
-            "G3缓冲库",
-            "盖板缓冲库",
-            "配平板缓冲库",
-            "IDOT缓冲库",
-            "固相合成板底座缓冲位",
-            "离心机库位",
-            "热封膜机位",
-        ],
-        "xy_col_row",
-    )
-    WAREHOUSE_BIOYOND_KEY_AXIS = dict.fromkeys(WAREHOUSE_BIOYOND_AXIS, "col_row")
-
-    def __init__(
-        self,
-        name: str = "PeptideStation_Deck",
-        size_x: float = 2700.0,
-        size_y: float = 2000.0,
-        size_z: float = 1500.0,
-        category: str = "deck",
-        setup: bool = False
-    ) -> None:
-        super().__init__(name=name, size_x=size_x, size_y=size_y, size_z=size_z)
-        if setup:
-            self.setup()
-
-    @classmethod
-    def deserialize(cls, data: dict, allow_marshal: bool = False):
-        if data.get("children") and data.get("setup") is True:
-            data = data.copy()
-            data["setup"] = False
-            # 已有序列化子资源，跳过 setup 避免重复创建
-            result = super(BIOYOND_PeptideStation_Deck, cls).deserialize(data, allow_marshal=allow_marshal)
-        else:
-            result = super(BIOYOND_PeptideStation_Deck, cls).deserialize(data, allow_marshal=allow_marshal)
-        result._ensure_peptide_warehouse_metadata()
-        return result
-
-    def _ensure_peptide_warehouse_metadata(self) -> None:
-        for child in getattr(self, "children", []):
-            name = getattr(child, "name", "")
-            axis = self.WAREHOUSE_BIOYOND_AXIS.get(name)
-            if axis and not hasattr(child, "bioyond_axis"):
-                child.bioyond_axis = axis
-            key_axis = self.WAREHOUSE_BIOYOND_KEY_AXIS.get(name)
-            if key_axis and not hasattr(child, "bioyond_key_axis"):
-                child.bioyond_key_axis = key_axis
-
-    def _frontend_y_flipped_coordinate(self, display_x: float, display_y: float, child) -> Coordinate:
-        """把期望显示坐标转换为兼容前端 y 轴翻转的存储坐标。"""
-        return Coordinate(display_x, self.get_size_y() - display_y - child.get_size_y(), 0.0)
-
-    def setup(self) -> None:
-        # 多肽工作站仓库配置
-        # 基于 2026-05-09 live API probe 发现的实际仓库拓扑 (12个仓库)
-        # 数据来源: Bioyond 现场仓库发现结果。
-        self.warehouses = {
-            # 主自动化堆栈 - live API: code 10-17 -> x=17, y=10，显示为 17 行×10 列
-            "自动化堆栈": bioyond_warehouse_numeric_stack(
-                "自动化堆栈",
-                rows=17,
-                columns=10,
-                bioyond_axis="xy_col_row",
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-
-            # 低温存储
-            "低温冰箱仓库": bioyond_warehouse_live_grid(
-                "低温冰箱仓库",
-                rows=3,
-                columns=2,
-                slot_keys=["1", "2", "3", "4", "5", "6"],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-
-            # 移液站库位
-            "Tecan移液站库": bioyond_warehouse_live_grid(
-                "Tecan移液站库",
-                rows=18,
-                columns=1,
-                slot_keys=[str(index) for index in range(1, 19)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-            "G3移液站库": bioyond_warehouse_live_grid(
-                "G3移液站库",
-                rows=18,
-                columns=1,
-                slot_keys=["1", "2", "3", "4", "垃圾桶", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18"],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-            "IDOT移液站库": bioyond_warehouse_live_grid(
-                "IDOT移液站库",
-                rows=12,
-                columns=1,
-                slot_keys=[f"0009-{index:04d}" for index in range(1, 13)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-
-            # 缓冲库位
-            "G3缓冲库": bioyond_warehouse_live_grid(
-                "G3缓冲库",
-                rows=5,
-                columns=1,
-                slot_keys=[str(index) for index in range(1, 6)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-            "盖板缓冲库": bioyond_warehouse_live_grid(
-                "盖板缓冲库",
-                rows=7,
-                columns=1,
-                slot_keys=[str(index) for index in range(1, 8)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-            "配平板缓冲库": bioyond_warehouse_live_grid(
-                "配平板缓冲库",
-                rows=3,
-                columns=1,
-                slot_keys=[str(index) for index in range(1, 4)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-            "IDOT缓冲库": bioyond_warehouse_live_grid(
-                "IDOT缓冲库",
-                rows=2,
-                columns=1,
-                slot_keys=["1", "1"],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-            "固相合成板底座缓冲位": bioyond_warehouse_live_grid(
-                "固相合成板底座缓冲位",
-                rows=4,
-                columns=1,
-                slot_keys=[f"0015-{index:04d}" for index in range(1, 5)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-
-            # 设备库位
-            "离心机库位": bioyond_warehouse_live_grid(
-                "离心机库位",
-                rows=4,
-                columns=1,
-                slot_keys=[f"0017-{index:04d}" for index in range(1, 5)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-            "热封膜机位": bioyond_warehouse_live_grid(
-                "热封膜机位",
-                rows=2,
-                columns=1,
-                slot_keys=[f"0016-{index:04d}" for index in range(1, 3)],
-                bioyond_key_axis="col_row",
-                frontend_y_flip=True,
-            ),
-        }
-
-        # 仓库显示布局：紧凑排列；存储 y 坐标按前端兼容翻转预先反向。
-        display_layout = {
-            "自动化堆栈": (0.0, 0.0),
-            "Tecan移液站库": (1520.0, 0.0),
-            "G3移液站库": (1710.0, 0.0),
-            "IDOT移液站库": (1900.0, 0.0),
-            "G3缓冲库": (2090.0, 0.0),
-            "盖板缓冲库": (2090.0, 580.0),
-            "低温冰箱仓库": (2280.0, 0.0),
-            "配平板缓冲库": (2280.0, 370.0),
-            "IDOT缓冲库": (2470.0, 370.0),
-            "固相合成板底座缓冲位": (2280.0, 740.0),
-            "离心机库位": (2470.0, 740.0),
-            "热封膜机位": (2280.0, 1210.0),
-        }
-        self.warehouse_locations = {
-            name: self._frontend_y_flipped_coordinate(x, y, self.warehouses[name])
-            for name, (x, y) in display_layout.items()
-        }
-
-        for warehouse_name, warehouse in self.warehouses.items():
-            self.assign_child_resource(warehouse, location=self.warehouse_locations[warehouse_name])
-
 def YB_Deck(name: str) -> Deck:
     by=BIOYOND_YB_Deck(name=name)
     by.setup()
     return by
+
+
+
+
+

unilabos/resources/bioyond/peptide_materials.py

@@ -1,247 +0,0 @@
-"""Peptide Station Material Resource Definitions."""
-
-from __future__ import annotations
-
-from collections import OrderedDict
-
-try:
-    from pylabrobot.resources import Container, Plate, TipRack
-except Exception:  # pragma: no cover - 允许无 pylabrobot 的轻量动作测试导入
-    class _FallbackResource:
-        def __init__(self, *args, **kwargs):
-            self.args = args
-            self.kwargs = kwargs
-
-    class Container(_FallbackResource):  # type: ignore[no-redef]
-        pass
-
-    class Plate(_FallbackResource):  # type: ignore[no-redef]
-        pass
-
-    class TipRack(_FallbackResource):  # type: ignore[no-redef]
-        pass
-
-try:
-    from unilabos.registry.decorators import resource
-except Exception:  # pragma: no cover - 允许无完整 registry 依赖时导入常量
-    def resource(*args, **kwargs):
-        def decorator(cls):
-            return cls
-
-        return decorator
-
-
-def _ensure_itemized_ordering(kwargs: dict) -> None:
-    if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
-        kwargs["ordering"] = OrderedDict()
-
-
-class _PeptideTipRack(TipRack):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("size_x", 127.76)
-        kwargs.setdefault("size_y", 85.48)
-        kwargs.setdefault("size_z", 64.0)
-        kwargs.setdefault("with_tips", True)
-        _ensure_itemized_ordering(kwargs)
-        super().__init__(*args, **kwargs)
-
-
-class _PeptidePlate(Plate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("size_x", 127.76)
-        kwargs.setdefault("size_y", 85.48)
-        kwargs.setdefault("size_z", 14.35)
-        kwargs.setdefault("plate_type", "skirted")
-        _ensure_itemized_ordering(kwargs)
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_1000ul_tip_rack",
-    category=["labware", "tip_rack"],
-    description="1000uL tip rack for Bioyond peptide station",
-)
-class BioyondPeptide_1000ul_TipRack(_PeptideTipRack):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_1000ul_tip_rack")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_200ul_tip_rack",
-    category=["labware", "tip_rack"],
-    description="200uL tip rack for Bioyond peptide station",
-)
-class BioyondPeptide_200ul_TipRack(_PeptideTipRack):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_200ul_tip_rack")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_50ul_tip_rack",
-    category=["labware", "tip_rack"],
-    description="50uL tip rack for Bioyond peptide station",
-)
-class BioyondPeptide_50ul_TipRack(_PeptideTipRack):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_50ul_tip_rack")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_96_well_deep_well_plate",
-    category=["labware", "plate"],
-    description="96 well deep well plate for Bioyond peptide station",
-)
-class BioyondPeptide_96WellDeepWellPlate(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_96_well_deep_well_plate")
-        kwargs.setdefault("size_z", 44.0)
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_96_well_synthesis_plate",
-    category=["labware", "plate"],
-    description="96 well solid-phase synthesis plate for Bioyond peptide station",
-)
-class BioyondPeptide_96WellSynthesisPlate(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_96_well_synthesis_plate")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_96_well_synthesis_plate_base",
-    category=["labware", "adapter"],
-    description="96 well solid-phase synthesis plate base for Bioyond peptide station",
-)
-class BioyondPeptide_96WellSynthesisPlateBase(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_96_well_synthesis_plate_base")
-        kwargs.setdefault("size_z", 20.0)
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_96_well_balance_plate",
-    category=["labware", "plate"],
-    description="96 well balance plate for Bioyond peptide station",
-)
-class BioyondPeptide_96WellBalancePlate(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_96_well_balance_plate")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_384_well_plate",
-    category=["labware", "plate"],
-    description="384 well plate for Bioyond peptide station",
-)
-class BioyondPeptide_384WellPlate(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_384_well_plate")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_384_lcms_plate",
-    category=["labware", "plate"],
-    description="384 well LCMS plate for Bioyond peptide station",
-)
-class BioyondPeptide_384LCMSPlate(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_384_lcms_plate")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_384_balance_plate",
-    category=["labware", "plate"],
-    description="384 well balance plate for Bioyond peptide station",
-)
-class BioyondPeptide_384BalancePlate(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_384_balance_plate")
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_cover_plate",
-    category=["labware", "cover"],
-    description="Cover plate for Bioyond peptide station",
-)
-class BioyondPeptide_CoverPlate(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_cover_plate")
-        kwargs.setdefault("size_z", 8.0)
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_sealing_base",
-    category=["labware", "adapter"],
-    description="Sealing base for Bioyond peptide station",
-)
-class BioyondPeptide_SealingBase(_PeptidePlate):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("model", "bioyond_peptide_sealing_base")
-        kwargs.setdefault("size_z", 20.0)
-        super().__init__(*args, **kwargs)
-
-
-@resource(
-    id="bioyond_peptide_reagent_trough",
-    category=["labware", "trough"],
-    description="Reagent trough for Bioyond peptide station",
-)
-class BioyondPeptide_ReagentTrough(Container):
-    def __init__(self, *args, **kwargs):
-        kwargs.setdefault("size_x", 127.76)
-        kwargs.setdefault("size_y", 85.48)
-        kwargs.setdefault("size_z", 44.0)
-        kwargs.setdefault("max_volume", 300000.0)
-        kwargs.setdefault("model", "bioyond_peptide_reagent_trough")
-        super().__init__(*args, **kwargs)
-
-
-DEFAULT_PEPTIDE_MATERIAL_TYPE_MAPPINGS = {
-    "bioyond_peptide_1000ul_tip_rack": ["1000μL枪头盒", "3a1890bb-736e-cfdd-3213-eb314e8a60f9"],
-    "bioyond_peptide_200ul_tip_rack": ["200μL枪头盒", "3a1890bb-36d1-964a-18bd-0bf0f2877a7b"],
-    "bioyond_peptide_50ul_tip_rack": ["50μL枪头盒", "3a1890bc-5fae-361c-cc09-e6f2f6dcd71d"],
-    "bioyond_peptide_96_well_deep_well_plate": ["96孔深孔板", "3a1890bc-1fa8-fe39-9faa-12279ed4569b"],
-    "bioyond_peptide_96_well_synthesis_plate": ["96孔固相合成板", "3a1871cb-99f3-f01d-23e2-08dbbd0045b5"],
-    "bioyond_peptide_96_well_synthesis_plate_base": ["96孔固相合成板底座", "3a1b997e-241b-64f0-80d1-47bca08799d1"],
-    "bioyond_peptide_96_well_balance_plate": ["96孔配平板", "3a187661-2378-1e20-fa5c-a27d49fdc15d"],
-    "bioyond_peptide_384_well_plate": ["384孔酶标板", "3a1890bf-2148-ed20-92bd-d85869947d9a"],
-    "bioyond_peptide_384_lcms_plate": ["384孔LCMS板", "3a1e6a8b-cb61-74da-a089-8e6f197f80f0"],
-    "bioyond_peptide_384_balance_plate": ["384孔配平板", "3a18be7e-47cc-888c-fc68-055753286826"],
-    "bioyond_peptide_cover_plate": ["防挥发盖板", "3a19d5a6-b0e2-b486-e5eb-bcabc632f4de"],
-    "bioyond_peptide_sealing_base": ["封膜底座", "3a1d1d7b-e33b-6975-165d-c56cba5ed345"],
-    "bioyond_peptide_reagent_trough": ["12道试剂槽", "3a18b431-ac58-ca2e-9680-2a4f5880ea45"],
-}
-
-
-MATERIAL_TYPE_CODE_TO_CLASS = {
-    "0001": BioyondPeptide_96WellSynthesisPlate,
-    "0002": BioyondPeptide_96WellBalancePlate,
-    "0008": BioyondPeptide_200ul_TipRack,
-    "0009": BioyondPeptide_1000ul_TipRack,
-    "0011": BioyondPeptide_96WellDeepWellPlate,
-    "0012": BioyondPeptide_50ul_TipRack,
-    "0016": BioyondPeptide_384WellPlate,
-    "0018": BioyondPeptide_384WellPlate,
-    "0024": BioyondPeptide_ReagentTrough,
-    "0026": BioyondPeptide_384BalancePlate,
-    "0035": BioyondPeptide_CoverPlate,
-    "0039": BioyondPeptide_96WellSynthesisPlateBase,
-    "0041": BioyondPeptide_SealingBase,
-    "0049": BioyondPeptide_384LCMSPlate,
-}
-
-
-def get_material_class_by_type_code(type_code: str):
-    """Return a peptide material class by Bioyond material type code."""
-    return MATERIAL_TYPE_CODE_TO_CLASS.get(type_code)

unilabos/resources/bioyond/warehouses.py

@@ -1,192 +1,5 @@
-from pylabrobot.resources import Coordinate
-from pylabrobot.resources.carrier import ResourceHolder, create_homogeneous_resources
-
 from unilabos.resources.warehouse import WareHouse, warehouse_factory
 
-
-class BioyondWareHouse(WareHouse):
-    """Bioyond 仓库，额外保存服务端 x/y 坐标和库位标签语义。"""
-
-    def __init__(self, *args, bioyond_axis: str = "xy_row_col", bioyond_key_axis: str = "row_col", **kwargs):
-        super().__init__(*args, **kwargs)
-        self.bioyond_axis = bioyond_axis
-        self.bioyond_key_axis = bioyond_key_axis
-
-    def serialize(self) -> dict:
-        data = super().serialize()
-        data["bioyond_axis"] = self.bioyond_axis
-        data["bioyond_key_axis"] = self.bioyond_key_axis
-        return data
-
-
-def bioyond_warehouse_numeric_stack(
-    name: str,
-    rows: int = 10,
-    columns: int = 17,
-    bioyond_axis: str = "xy_row_col",
-    bioyond_key_axis: str = "row_col",
-    frontend_y_flip: bool = False,
-) -> WareHouse:
-    """创建 Bioyond 数字库位堆栈，库位名使用服务端返回的 行-列 格式。
-
-    bioyond_axis: 仓库级别的 Bioyond 坐标轴约定，供 graphio 的坐标映射使用。
-        - "xy_row_col" (default): Bioyond x→row, y→col (reaction/peptide 历史约定).
-        - "xy_col_row": Bioyond x→col, y→row (Sirna live API 实测约定).
-    bioyond_key_axis: 库位标签生成约定。
-        - "row_col" (default): 视觉行列和标签行列一致，例如 10 行 x 17 列 → 1-1..10-17。
-        - "col_row": 视觉行列转置，但标签仍保持 Bioyond row-col，例如
-          17 行 x 10 列 → 1-1..10-17。
-    未设置时 graphio 回退到默认 "xy_row_col"，其他调用方保持原行为。
-    """
-    num_items_x = columns
-    num_items_y = rows
-    num_items_z = 1
-    dx = 10.0
-    dy = 10.0
-    dz = 10.0
-    item_dx = 147.0
-    item_dy = 106.0
-    item_dz = 130.0
-    resource_size_x = 127.0
-    resource_size_y = 86.0
-    resource_size_z = 25.0
-    size_y = dy + item_dy * num_items_y
-    locations = []
-    for row in range(num_items_y):
-        display_y = dy + row * item_dy
-        y = size_y - display_y - resource_size_y if frontend_y_flip else display_y
-        for col in range(num_items_x):
-            locations.append(Coordinate(dx + col * item_dx, y, dz))
-    holders = create_homogeneous_resources(
-        klass=ResourceHolder,
-        locations=locations,
-        resource_size_x=resource_size_x,
-        resource_size_y=resource_size_y,
-        resource_size_z=resource_size_z,
-        name_prefix=name,
-    )
-    if bioyond_key_axis == "row_col":
-        keys = [
-            f"{row + 1}-{col + 1}"
-            for row in range(num_items_y)
-            for col in range(num_items_x)
-        ]
-    elif bioyond_key_axis == "col_row":
-        keys = [
-            f"{col + 1}-{row + 1}"
-            for row in range(num_items_y)
-            for col in range(num_items_x)
-        ]
-    else:
-        raise ValueError(f"未知 Bioyond 库位标签约定: {bioyond_key_axis!r}")
-    warehouse = BioyondWareHouse(
-        name=name,
-        size_x=dx + item_dx * num_items_x,
-        size_y=size_y,
-        size_z=dz + item_dz * num_items_z,
-        num_items_x=num_items_x,
-        num_items_y=num_items_y,
-        num_items_z=num_items_z,
-        ordering_layout="row-major",
-        sites={key: holder for key, holder in zip(keys, holders.values())},
-        category="warehouse",
-        bioyond_axis=bioyond_axis,
-        bioyond_key_axis=bioyond_key_axis,
-    )
-    return warehouse
-
-
-def bioyond_warehouse_live_grid(
-    name: str,
-    rows: int,
-    columns: int,
-    slot_keys: list[str] | None = None,
-    bioyond_axis: str = "xy_col_row",
-    bioyond_key_axis: str = "row_col",
-    frontend_y_flip: bool = False,
-) -> WareHouse:
-    """创建 Bioyond 实测库位网格，按服务端 code 保存位点标签。
-
-    默认用于 Peptide live API 返回的坐标：x 是视觉列，y 是视觉行。
-    当服务端 code 重复时，为保持 PLR ordering 唯一性，会给后续重复项追加 ``#N``。
-    """
-    num_items_x = columns
-    num_items_y = rows
-    num_items_z = 1
-    dx = 10.0
-    dy = 10.0
-    dz = 10.0
-    item_dx = 147.0
-    item_dy = 106.0
-    item_dz = 130.0
-    resource_size_x = 127.0
-    resource_size_y = 86.0
-    resource_size_z = 25.0
-    size_y = dy + item_dy * num_items_y
-    locations = []
-    for row in range(num_items_y):
-        display_y = dy + row * item_dy
-        y = size_y - display_y - resource_size_y if frontend_y_flip else display_y
-        for col in range(num_items_x):
-            locations.append(Coordinate(dx + col * item_dx, y, dz))
-    holders = create_homogeneous_resources(
-        klass=ResourceHolder,
-        locations=locations,
-        resource_size_x=resource_size_x,
-        resource_size_y=resource_size_y,
-        resource_size_z=resource_size_z,
-        name_prefix=name,
-    )
-    keys = slot_keys or [str(index + 1) for index in range(num_items_x * num_items_y)]
-    if len(keys) != len(holders):
-        raise ValueError(f"{name} 库位数量不匹配: keys={len(keys)}, holders={len(holders)}")
-
-    seen: dict[str, int] = {}
-    unique_keys: list[str] = []
-    for key in keys:
-        count = seen.get(key, 0) + 1
-        seen[key] = count
-        unique_keys.append(key if count == 1 else f"{key}#{count}")
-
-    return BioyondWareHouse(
-        name=name,
-        size_x=dx + item_dx * num_items_x,
-        size_y=size_y,
-        size_z=dz + item_dz * num_items_z,
-        num_items_x=num_items_x,
-        num_items_y=num_items_y,
-        num_items_z=num_items_z,
-        ordering_layout="row-major",
-        sites={key: holder for key, holder in zip(unique_keys, holders.values())},
-        category="warehouse",
-        bioyond_axis=bioyond_axis,
-        bioyond_key_axis=bioyond_key_axis,
-    )
-
-
-# ================ 小核酸工作站相关堆栈 ================
-
-def bioyond_warehouse_sirna_g3_liquid_handler(name: str = "G3移液站") -> WareHouse:
-    """创建小核酸 G3 移液站库位堆栈：显示为 14 行 x 1 列，标签保持 1-1..1-14。"""
-    return bioyond_warehouse_numeric_stack(
-        name, rows=14, columns=1, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
-    )
-
-
-def bioyond_warehouse_sirna_automation_stack(name: str = "自动化堆栈") -> WareHouse:
-    """创建小核酸自动化堆栈：显示为 17 行 x 10 列，标签保持 1-1..10-17。"""
-    return bioyond_warehouse_numeric_stack(
-        name, rows=17, columns=10, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
-    )
-
-
-def bioyond_warehouse_sirna_centrifuge_balance_plate_stack(name: str = "离心机配平板堆栈") -> WareHouse:
-    """创建小核酸离心机配平板堆栈：显示为 1 行 x 2 列，标签保持 1-1、2-1。"""
-    return bioyond_warehouse_numeric_stack(
-        name, rows=1, columns=2, bioyond_axis="xy_col_row", bioyond_key_axis="col_row"
-    )
-
-
 # ================ 反应站相关堆栈 ================
 
 def bioyond_warehouse_1x4x4(name: str) -> WareHouse:

unilabos/resources/graphio.py

@@ -736,7 +736,7 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
             logger.warning(f"物料 {unique_name} 不是有效的 ResourcePLR 实例，类型: {type(plr_material)}")
             continue
 
-        plr_material.code = material.get("barCode") or material.get("code") or ""
+        plr_material.code = material.get("code", "") and material.get("barCode", "") or ""
         plr_material.unilabos_uuid = str(uuid.uuid4())
 
         # ⭐ 保存 Bioyond 原始信息到 unilabos_extra（用于出库时查询）
@@ -864,22 +864,11 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
                     warehouse = deck.warehouses[wh_name]
                     logger.debug(f"[Warehouse匹配] 找到warehouse: {wh_name} (容量: {warehouse.capacity}, 行×列: {warehouse.num_items_x}×{warehouse.num_items_y})")
 
-                    # Bioyond坐标映射:
+                    # Bioyond坐标映射 (重要！): x→行(1=A,2=B...), y→列(1=01,2=02...), z→层(通常=1)
-                    # - 历史 row_col 仓库中 x/y 直接按行/列参与索引。
+                    x = loc.get("x", 1)  # 行号 (1-based: 1=A, 2=B, 3=C, 4=D)
-                    # - Sirna 的库位标签为 col-row，stock-material 返回 x=标签第二段、y=标签第一段。
+                    y = loc.get("y", 1)  # 列号 (1-based: 1=01, 2=02, 3=03...)
-                    #   因此 x=13,y=4 应落到 key=4-13，而不是交换后落到 3-5。
-                    x = loc.get("x", 1)
-                    y = loc.get("y", 1)
                     z = loc.get("z", 1)  # 层号 (1-based, 通常为1)
 
-                    # 仓库级别的轴约定覆盖。
-                    # 对旧的 row-col 视觉标签，bioyond_axis="xy_col_row" 需要交换 x/y。
-                    # 对 Sirna 的 col-row 库位标签，原始 x/y 已能直接索引到 code 对应位置，不再交换。
-                    bioyond_axis = getattr(warehouse, "bioyond_axis", "xy_row_col")
-                    bioyond_key_axis = getattr(warehouse, "bioyond_key_axis", "row_col")
-                    if bioyond_axis == "xy_col_row" and bioyond_key_axis != "col_row":
-                        x, y = y, x
-
                     # 如果是右侧堆栈，需要调整列号 (5→1, 6→2, 7→3, 8→4)
                     if wh_name == "堆栈1右":
                         y = y - 4  # 将5-8映射到1-4
@@ -923,43 +912,10 @@ def resource_bioyond_to_plr(bioyond_materials: list[dict], type_mapping: Dict[st
                             logger.debug(f"列优先warehouse {wh_name}: x={x}(行),y={y}(列) → row={row_idx},col={col_idx} → idx={idx}")
 
                     if 0 <= idx < warehouse.capacity:
-                        slot_key = None
+                        if warehouse[idx] is None or isinstance(warehouse[idx], ResourceHolder):
-                        ordering = getattr(warehouse, "_ordering", {})
-                        sites = getattr(warehouse, "sites", [])
-                        if isinstance(ordering, dict) and idx < len(sites):
-                            site_at_idx = sites[idx]
-                            slot_key = next(
-                                (key for key, site in ordering.items() if site is site_at_idx),
-                                None,
-                            )
-
-                        current_resource = warehouse[idx]
-                        if current_resource is None or isinstance(current_resource, (ResourceHolder, str)):
-                            if isinstance(current_resource, str):
-                                logger.warning(
-                                    f"⚠️ 物料 {unique_name} 覆盖 {wh_name}[{idx}]"
-                                    f"{f'({slot_key})' if slot_key else ''} 的旧占位 occupied_by={current_resource!r}"
-                                )
                             # 物料尺寸已在放入warehouse前根据需要进行了交换
                             warehouse[idx] = plr_material
-                            logger.debug(
+                            logger.debug(f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}] (Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})")
-                                f"✅ 物料 {unique_name} 放置到 {wh_name}[{idx}]"
-                                f"{f'({slot_key})' if slot_key else ''} "
-                                f"(Bioyond坐标: x={loc.get('x')}, y={loc.get('y')})"
-                            )
-                        else:
-                            parent = getattr(current_resource, "parent", None)
-                            current_repr = repr(current_resource)
-                            current_len = len(current_resource) if isinstance(current_resource, str) else None
-                            logger.warning(
-                                f"⚠️ 物料 {unique_name} 跳过放置到 {wh_name}[{idx}]"
-                                f"{f'({slot_key})' if slot_key else ''}：目标库位已有 "
-                                f"{type(current_resource).__name__}"
-                                f"(value={current_repr}, len={current_len})"
-                                f"(name={getattr(current_resource, 'name', None)}, "
-                                f"parent={getattr(parent, 'name', None)}, "
-                                f"uuid={getattr(current_resource, 'unilabos_uuid', None)})"
-                            )
                     else:
                         logger.warning(f"❌ 物料 {unique_name} 的索引 {idx} 超出仓库 {wh_name} 容量 {warehouse.capacity}")
                 else:

unilabos/resources/plr_additional_res_reg.py

@@ -18,7 +18,3 @@ def register():
     from unilabos.devices.liquid_handling.rviz_backend import UniLiquidHandlerRvizBackend
     from unilabos.devices.liquid_handling.laiyu.backend.laiyu_v_backend import UniLiquidHandlerLaiyuBackend
 
-    # noinspection PyUnresolvedReferences
-    from unilabos.resources.bioyond.decks import BIOYOND_SirnaStation_Deck
-    # noinspection PyUnresolvedReferences
-    from unilabos.resources.bioyond.decks import BIOYOND_PeptideStation_Deck

unilabos/utils/environment_check.py

@@ -47,7 +47,10 @@ def _has_uv() -> bool:
 
 def _install_command(installer: str, package: str, upgrade: bool, is_chinese: bool) -> List[str]:
     if installer == "uv":
-        cmd = ["uv", "pip", "install"]
+        # uv >= 0.5 默认要求虚拟环境，对 conda env 会报 "No virtual environment found"。
+        # 显式 --python sys.executable 让 uv 把当前解释器（conda/venv/system 都行）
+        # 视为目标环境，绕开 venv 检测。
+        cmd = ["uv", "pip", "install", "--python", sys.executable]
         if upgrade:
             cmd.append("--upgrade")
         cmd.append(package)
@@ -89,7 +92,11 @@ def _print_manual_git_install_hint(requirement: str) -> None:
         return
 
     repo_dir = _repo_dir_name(git_url)
-    install_cmd = "uv pip install -e ." if _has_uv() else f"{sys.executable} -m pip install -e ."
+    install_cmd = (
+        f'uv pip install --python "{sys.executable}" -e .'
+        if _has_uv()
+        else f"{sys.executable} -m pip install -e ."
+    )
     if _is_chinese_locale() and not _has_uv():
         install_cmd += " -i https://mirrors.tuna.tsinghua.edu.cn/pypi/web/simple"
 

unilabos_msgs/package.xml

@@ -2,7 +2,7 @@
 <?xml-model href="http://download.ros.org/schema/package_format3.xsd" schematypens="http://www.w3.org/2001/XMLSchema"?>
 <package format="3">
   <name>unilabos_msgs</name>
-  <version>0.11.1</version>
+  <version>0.11.2</version>
   <description>ROS2 Messages package for unilabos devices</description>
   <maintainer email="changjh@pku.edu.cn">Junhan Chang</maintainer>
   <maintainer email="18435084+Xuwznln@users.noreply.github.com">Xuwznln</maintainer>