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test: 新增编译器全链路测试和资源转换测试
- test_pump_separate_full_chain: PumpTransfer和Separate全链路测试， 验证bug修复后separate不再crash - test_full_chain_conversion_to_compile: HeatChill/Add协议结构验证 - test_resource_conversion_path: ResourceDictInstance转换路径测试 - test_batch_transfer_protocol: AGV批量转运编译器测试 - test_agv_transport_station: AGV工作站设备测试 Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
Junhan Chang
538
tests/compile/test_pump_separate_full_chain.py
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538
tests/compile/test_pump_separate_full_chain.py
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@@ -0,0 +1,538 @@
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"""
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PumpTransfer 和 Separate 全链路测试
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构建包含泵/阀门/分液漏斗的完整设备图，
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输出完整的中间数据（最短路径、泵骨架、动作列表等）。
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"""
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import copy
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import json
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import pprint
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import pytest
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import networkx as nx
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from unilabos.resources.resource_tracker import ResourceTreeSet
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from unilabos.compile.utils.resource_helper import get_resource_id, get_resource_data
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from unilabos.compile.utils.vessel_parser import get_vessel
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def _make_raw_resource(id, uuid=None, name=None, klass="", type_="device",
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parent=None, parent_uuid=None, data=None, config=None, extra=None):
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return {
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"id": id,
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"uuid": uuid or f"uuid-{id}",
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"name": name or id,
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"class": klass,
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"type": type_,
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"parent": parent,
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"parent_uuid": parent_uuid or "",
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"description": "",
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"config": config or {},
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"data": data or {},
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"extra": extra or {},
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"position": {"x": 0.0, "y": 0.0, "z": 0.0},
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}
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def _simulate_enrichment(raw_data_list):
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tree_set = ResourceTreeSet.from_raw_dict_list(raw_data_list)
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root = tree_set.trees[0].root_node if tree_set.trees else None
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return root.get_plr_nested_dict() if root else {}
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def _build_pump_transfer_graph():
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"""
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构建带泵/阀门的设备图，用于测试 PumpTransfer:
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flask_water (container)
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↓
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valve_1 (multiway_valve, pump_1 连接)
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↓
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reactor_01 (device)
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同时有: stirrer_1, heatchill_1, separator_1
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"""
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G = nx.DiGraph()
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# 源容器
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G.add_node("flask_water", **{
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"id": "flask_water", "name": "flask_water",
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"type": "container", "class": "",
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"data": {"reagent_name": "water", "liquid": [{"liquid_type": "water", "volume": 200.0}]},
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"config": {"reagent": "water"},
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})
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# 多通阀
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G.add_node("valve_1", **{
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"id": "valve_1", "name": "valve_1",
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"type": "device", "class": "multiway_valve",
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"data": {}, "config": {},
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})
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# 注射泵（连接到阀门）
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G.add_node("pump_1", **{
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"id": "pump_1", "name": "pump_1",
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"type": "device", "class": "virtual_pump",
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"data": {}, "config": {"max_volume": 25.0},
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})
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# 目标容器
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G.add_node("reactor_01", **{
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"id": "reactor_01", "name": "reactor_01",
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"type": "device", "class": "virtual_stirrer",
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"data": {"liquid": [{"liquid_type": "water", "volume": 50.0}]},
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"config": {},
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})
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# 搅拌器
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G.add_node("stirrer_1", **{
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"id": "stirrer_1", "name": "stirrer_1",
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"type": "device", "class": "virtual_stirrer",
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"data": {}, "config": {},
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})
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# 加热器
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G.add_node("heatchill_1", **{
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"id": "heatchill_1", "name": "heatchill_1",
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"type": "device", "class": "virtual_heatchill",
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"data": {}, "config": {},
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})
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# 分离器
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G.add_node("separator_1", **{
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"id": "separator_1", "name": "separator_1",
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"type": "device", "class": "separator_controller",
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"data": {}, "config": {},
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})
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# 废液容器
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G.add_node("waste_workup", **{
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"id": "waste_workup", "name": "waste_workup",
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"type": "container", "class": "",
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"data": {}, "config": {},
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})
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# 产物收集瓶
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G.add_node("product_flask", **{
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"id": "product_flask", "name": "product_flask",
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"type": "container", "class": "",
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"data": {}, "config": {},
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})
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# DCM溶剂瓶
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G.add_node("flask_dcm", **{
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"id": "flask_dcm", "name": "flask_dcm",
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"type": "container", "class": "",
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"data": {"reagent_name": "dcm", "liquid": [{"liquid_type": "dcm", "volume": 500.0}]},
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"config": {"reagent": "dcm"},
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})
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# 边连接 —— flask_water → valve_1 → reactor_01
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G.add_edge("flask_water", "valve_1", port={"valve_1": "port_1"})
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G.add_edge("valve_1", "reactor_01", port={"valve_1": "port_2"})
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# 阀门 → 泵
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G.add_edge("valve_1", "pump_1")
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G.add_edge("pump_1", "valve_1")
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# 搅拌器 ↔ reactor
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G.add_edge("stirrer_1", "reactor_01")
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# 加热器 ↔ reactor
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G.add_edge("heatchill_1", "reactor_01")
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# 分离器 ↔ reactor
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G.add_edge("separator_1", "reactor_01")
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G.add_edge("reactor_01", "separator_1")
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# DCM → valve → reactor (同一泵路)
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G.add_edge("flask_dcm", "valve_1", port={"valve_1": "port_3"})
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# reactor → valve → product/waste
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G.add_edge("valve_1", "product_flask", port={"valve_1": "port_4"})
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G.add_edge("valve_1", "waste_workup", port={"valve_1": "port_5"})
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return G
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def _format_action(action, indent=0):
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"""格式化单个 action 为可读字符串"""
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prefix = " " * indent
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if isinstance(action, list):
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# 并行动作
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lines = [f"{prefix}[PARALLEL]"]
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for sub in action:
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lines.append(_format_action(sub, indent + 1))
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return "\n".join(lines)
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name = action.get("action_name", "?")
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device = action.get("device_id", "")
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kwargs = action.get("action_kwargs", {})
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comment = action.get("_comment", "")
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meta = action.get("_transfer_meta", "")
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parts = [f"{prefix}→ {device}::{name}"]
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if kwargs:
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# 精简输出
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kw_str = ", ".join(f"{k}={v}" for k, v in kwargs.items()
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if k not in ("progress_message",))
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if kw_str:
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parts.append(f" kwargs: {{{kw_str}}}")
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if comment:
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parts.append(f" # {comment}")
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if meta:
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parts.append(f" meta: {meta}")
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return "\n".join(f"{prefix}{p}" if i > 0 else p for i, p in enumerate(parts))
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def _dump_actions(actions, title=""):
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"""打印完整动作列表"""
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print(f"\n{'='*70}")
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print(f" {title}")
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print(f" 总动作数: {len(actions)}")
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print(f"{'='*70}")
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for i, action in enumerate(actions):
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print(f"\n [{i:02d}] {_format_action(action, indent=2)}")
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print(f"\n{'='*70}\n")
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# ==================== PumpTransfer 全链路 ====================
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class TestPumpTransferFullChain:
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"""PumpTransfer: 包含图路径查找、泵骨架构建、动作序列生成"""
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def test_pump_transfer_basic(self):
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"""基础泵转移：flask_water → valve_1 → reactor_01"""
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from unilabos.compile.pump_protocol import generate_pump_protocol
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G = _build_pump_transfer_graph()
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# 检查最短路径
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path = nx.shortest_path(G, "flask_water", "reactor_01")
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print(f"\n最短路径: {path}")
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assert "valve_1" in path
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# 调用编译器
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actions = generate_pump_protocol(
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G=G,
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from_vessel_id="flask_water",
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to_vessel_id="reactor_01",
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volume=10.0,
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flowrate=2.5,
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transfer_flowrate=0.5,
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)
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_dump_actions(actions, "PumpTransfer: flask_water → reactor_01, 10mL")
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# 验证
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assert isinstance(actions, list)
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assert len(actions) > 0
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# 应该有 set_valve_position 和 set_position 动作
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flat = [a for a in actions if isinstance(a, dict)]
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action_names = [a.get("action_name") for a in flat]
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print(f"动作名称列表: {action_names}")
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assert "set_valve_position" in action_names
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assert "set_position" in action_names
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def test_pump_transfer_with_rinsing_enriched_vessel(self):
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"""pump_with_rinsing 接收 enriched vessel dict"""
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from unilabos.compile.pump_protocol import generate_pump_protocol_with_rinsing
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G = _build_pump_transfer_graph()
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# 模拟 enrichment
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from_raw = [_make_raw_resource(
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id="flask_water", klass="", type_="container",
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data={"reagent_name": "water", "liquid": [{"liquid_type": "water", "volume": 200.0}]},
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)]
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to_raw = [_make_raw_resource(
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id="reactor_01", klass="virtual_stirrer", type_="device",
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)]
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from_enriched = _simulate_enrichment(from_raw)
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to_enriched = _simulate_enrichment(to_raw)
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print(f"\nfrom_vessel enriched: {json.dumps(from_enriched, indent=2, ensure_ascii=False)[:300]}...")
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print(f"to_vessel enriched: {json.dumps(to_enriched, indent=2, ensure_ascii=False)[:300]}...")
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# get_vessel 兼容
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fid, fdata = get_vessel(from_enriched)
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tid, tdata = get_vessel(to_enriched)
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print(f"from_vessel_id={fid}, to_vessel_id={tid}")
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assert fid == "flask_water"
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assert tid == "reactor_01"
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actions = generate_pump_protocol_with_rinsing(
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G=G,
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from_vessel=from_enriched,
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to_vessel=to_enriched,
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volume=15.0,
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flowrate=2.5,
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transfer_flowrate=0.5,
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)
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_dump_actions(actions, "PumpTransferWithRinsing: flask_water → reactor_01, 15mL (enriched)")
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assert isinstance(actions, list)
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assert len(actions) > 0
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def test_pump_transfer_multi_batch(self):
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"""体积 > max_volume 时自动分批"""
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from unilabos.compile.pump_protocol import generate_pump_protocol
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G = _build_pump_transfer_graph()
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# pump_1 的 max_volume = 25mL，转 60mL 应该分 3 批
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actions = generate_pump_protocol(
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G=G,
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from_vessel_id="flask_water",
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to_vessel_id="reactor_01",
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volume=60.0,
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flowrate=2.5,
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transfer_flowrate=0.5,
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)
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_dump_actions(actions, "PumpTransfer 分批: 60mL (max_volume=25mL, 预期 3 批)")
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assert len(actions) > 0
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# 应该有多轮 set_position
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flat = [a for a in actions if isinstance(a, dict)]
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set_position_count = sum(1 for a in flat if a.get("action_name") == "set_position")
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print(f"set_position 动作数: {set_position_count}")
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# 3批 × 2次 (吸液 + 排液) = 6 次 set_position
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assert set_position_count >= 6
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def test_pump_transfer_no_path(self):
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"""无路径时返回空"""
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from unilabos.compile.pump_protocol import generate_pump_protocol
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G = _build_pump_transfer_graph()
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G.add_node("isolated_flask", type="container")
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actions = generate_pump_protocol(
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G=G,
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from_vessel_id="isolated_flask",
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to_vessel_id="reactor_01",
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volume=10.0,
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)
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print(f"\n无路径时的动作列表: {actions}")
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assert actions == []
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def test_pump_backbone_filtering(self):
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"""验证泵骨架过滤逻辑（电磁阀被跳过）"""
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from unilabos.compile.pump_protocol import generate_pump_protocol
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G = _build_pump_transfer_graph()
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# 添加电磁阀到路径中
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G.add_node("solenoid_valve_1", **{
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"type": "device", "class": "solenoid_valve",
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"data": {}, "config": {},
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})
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# flask_water → solenoid_valve_1 → valve_1 → reactor_01
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G.remove_edge("flask_water", "valve_1")
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G.add_edge("flask_water", "solenoid_valve_1")
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G.add_edge("solenoid_valve_1", "valve_1")
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path = nx.shortest_path(G, "flask_water", "reactor_01")
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print(f"\n含电磁阀的路径: {path}")
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assert "solenoid_valve_1" in path
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actions = generate_pump_protocol(
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G=G,
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from_vessel_id="flask_water",
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to_vessel_id="reactor_01",
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volume=10.0,
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)
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_dump_actions(actions, "PumpTransfer 含电磁阀: flask_water → solenoid → valve_1 → reactor_01")
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# 电磁阀应被跳过，泵骨架只有 valve_1
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assert len(actions) > 0
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# ==================== Separate 全链路 ====================
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class TestSeparateProtocolFullChain:
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"""Separate: 包含 bug 确认和正常路径测试"""
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def test_separate_bug_line_128_fixed(self):
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"""验证 separate_protocol.py:128 的 bug 已修复（不再 crash）"""
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from unilabos.compile.separate_protocol import generate_separate_protocol
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G = _build_pump_transfer_graph()
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raw_data = [_make_raw_resource(
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id="reactor_01", klass="virtual_stirrer",
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data={"liquid": [{"liquid_type": "water", "volume": 100.0}]},
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)]
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enriched = _simulate_enrichment(raw_data)
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# 修复前：final_vessel_id, _ = vessel_id 会 crash（字符串解包）
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# 修复后：final_vessel_id = vessel_id，正常返回 action 列表
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result = generate_separate_protocol(
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G=G,
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vessel=enriched,
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purpose="extract",
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product_phase="top",
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product_vessel="product_flask",
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waste_vessel="waste_workup",
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solvent="dcm",
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volume="100 mL",
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)
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assert isinstance(result, list)
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assert len(result) > 0
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def test_separate_manual_workaround(self):
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"""
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绕过 line 128 bug，手动测试分离编译器中可以工作的子函数
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"""
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from unilabos.compile.separate_protocol import (
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find_separator_device,
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find_separation_vessel_bottom,
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)
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from unilabos.compile.utils.vessel_parser import (
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find_connected_stirrer,
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find_solvent_vessel,
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)
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from unilabos.compile.utils.unit_parser import parse_volume_input
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from unilabos.compile.utils.resource_helper import get_resource_liquid_volume as get_vessel_liquid_volume
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G = _build_pump_transfer_graph()
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# 1. get_vessel 解析 enriched dict
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raw_data = [_make_raw_resource(
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id="reactor_01", klass="virtual_stirrer",
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data={"liquid": [{"liquid_type": "water", "volume": 100.0}]},
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)]
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enriched = _simulate_enrichment(raw_data)
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vessel_id, vessel_data = get_vessel(enriched)
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print(f"\nvessel_id: {vessel_id}")
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print(f"vessel_data: {vessel_data}")
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assert vessel_id == "reactor_01"
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assert vessel_data["liquid"][0]["volume"] == 100.0
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# 2. find_separator_device
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sep = find_separator_device(G, vessel_id)
|
||||
print(f"分离器设备: {sep}")
|
||||
assert sep == "separator_1"
|
||||
|
||||
# 3. find_connected_stirrer
|
||||
stirrer = find_connected_stirrer(G, vessel_id)
|
||||
print(f"搅拌器设备: {stirrer}")
|
||||
assert stirrer == "stirrer_1"
|
||||
|
||||
# 4. find_solvent_vessel
|
||||
solvent_v = find_solvent_vessel(G, "dcm")
|
||||
print(f"DCM溶剂容器: {solvent_v}")
|
||||
assert solvent_v == "flask_dcm"
|
||||
|
||||
# 5. parse_volume_input
|
||||
vol = parse_volume_input("200 mL")
|
||||
print(f"体积解析: '200 mL' → {vol}")
|
||||
assert vol == 200.0
|
||||
|
||||
vol2 = parse_volume_input("1.5 L")
|
||||
print(f"体积解析: '1.5 L' → {vol2}")
|
||||
assert vol2 == 1500.0
|
||||
|
||||
# 6. get_vessel_liquid_volume
|
||||
liq_vol = get_vessel_liquid_volume(enriched)
|
||||
print(f"液体体积 (enriched dict): {liq_vol}")
|
||||
assert liq_vol == 100.0
|
||||
|
||||
# 7. find_separation_vessel_bottom
|
||||
bottom = find_separation_vessel_bottom(G, vessel_id)
|
||||
print(f"分离容器底部: {bottom}")
|
||||
# 当前图中没有命名匹配的底部容器
|
||||
|
||||
def test_pump_transfer_for_separate_subflow(self):
|
||||
"""测试 separate 中调用的 pump 子流程（溶剂添加 → 分液漏斗）"""
|
||||
from unilabos.compile.pump_protocol import generate_pump_protocol_with_rinsing
|
||||
|
||||
G = _build_pump_transfer_graph()
|
||||
|
||||
# 模拟分离前的溶剂添加步骤
|
||||
actions = generate_pump_protocol_with_rinsing(
|
||||
G=G,
|
||||
from_vessel="flask_dcm",
|
||||
to_vessel="reactor_01",
|
||||
volume=100.0,
|
||||
flowrate=2.5,
|
||||
transfer_flowrate=0.5,
|
||||
)
|
||||
|
||||
_dump_actions(actions, "Separate 子流程: flask_dcm → reactor_01, 100mL DCM")
|
||||
|
||||
assert isinstance(actions, list)
|
||||
assert len(actions) > 0
|
||||
|
||||
# 模拟分离后产物转移
|
||||
actions2 = generate_pump_protocol_with_rinsing(
|
||||
G=G,
|
||||
from_vessel="reactor_01",
|
||||
to_vessel="product_flask",
|
||||
volume=50.0,
|
||||
flowrate=2.5,
|
||||
transfer_flowrate=0.5,
|
||||
)
|
||||
|
||||
_dump_actions(actions2, "Separate 子流程: reactor_01 → product_flask, 50mL 产物")
|
||||
|
||||
assert len(actions2) > 0
|
||||
|
||||
# 废液转移
|
||||
actions3 = generate_pump_protocol_with_rinsing(
|
||||
G=G,
|
||||
from_vessel="reactor_01",
|
||||
to_vessel="waste_workup",
|
||||
volume=50.0,
|
||||
flowrate=2.5,
|
||||
transfer_flowrate=0.5,
|
||||
)
|
||||
|
||||
_dump_actions(actions3, "Separate 子流程: reactor_01 → waste_workup, 50mL 废液")
|
||||
|
||||
assert len(actions3) > 0
|
||||
|
||||
|
||||
# ==================== 图路径可视化 ====================
|
||||
|
||||
class TestGraphPathVisualization:
|
||||
"""输出图中关键路径信息"""
|
||||
|
||||
def test_all_shortest_paths(self):
|
||||
"""输出所有容器之间的最短路径"""
|
||||
G = _build_pump_transfer_graph()
|
||||
|
||||
containers = [n for n in G.nodes() if G.nodes[n].get("type") == "container"]
|
||||
devices = [n for n in G.nodes() if G.nodes[n].get("type") == "device"]
|
||||
|
||||
print(f"\n{'='*70}")
|
||||
print(f" 设备图概览")
|
||||
print(f"{'='*70}")
|
||||
print(f" 容器节点 ({len(containers)}): {containers}")
|
||||
print(f" 设备节点 ({len(devices)}): {devices}")
|
||||
print(f" 边数: {G.number_of_edges()}")
|
||||
print(f" 边列表:")
|
||||
for u, v, data in G.edges(data=True):
|
||||
port_info = data.get("port", "")
|
||||
print(f" {u} → {v} {port_info if port_info else ''}")
|
||||
|
||||
print(f"\n 关键路径:")
|
||||
pairs = [
|
||||
("flask_water", "reactor_01"),
|
||||
("flask_dcm", "reactor_01"),
|
||||
("reactor_01", "product_flask"),
|
||||
("reactor_01", "waste_workup"),
|
||||
("flask_water", "product_flask"),
|
||||
]
|
||||
for src, dst in pairs:
|
||||
try:
|
||||
path = nx.shortest_path(G, src, dst)
|
||||
length = len(path) - 1
|
||||
# 标注路径上的节点类型
|
||||
annotated = []
|
||||
for n in path:
|
||||
ntype = G.nodes[n].get("type", "?")
|
||||
nclass = G.nodes[n].get("class", "")
|
||||
annotated.append(f"{n}({ntype}{'/' + nclass if nclass else ''})")
|
||||
print(f" {src} → {dst}: 距离={length}")
|
||||
print(f" 路径: {' → '.join(annotated)}")
|
||||
except nx.NetworkXNoPath:
|
||||
print(f" {src} → {dst}: 无路径!")
|
||||
|
||||
print(f"{'='*70}\n")
|
||||
Reference in New Issue
Block a user