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fix bug

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This commit is contained in:
hanhua@dp.tech
2026-05-18 14:24:38 +08:00
parent 97ccc38c7f
commit 72495bfc74
1 changed files with 90 additions and 23 deletions
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113
unilabos/devices/workstation/bioyond_studio/peptide_station/peptide_station.py
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@@ -194,24 +194,6 @@ class PeptideDay4LCMSOptionalParams(PeptideCommonSubmitOptionalParams, total=Fal
pass pass
_SUBMIT_INPUT_HANDLES = [
ActionInputHandle(
key="sample_excel_relative_path",
data_type="bioyond_sample_file",
label="样品 Excel 相对路径",
data_key="sample_excel_relative_path",
data_source=DataSource.HANDLE,
io_type="source",
),
]
_SUBMIT_OUTPUT_HANDLES = [
ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR),
]
def _apply_default_peptide_material_type_mappings(config: Dict[str, Any]) -> None: def _apply_default_peptide_material_type_mappings(config: Dict[str, Any]) -> None:
configured = config.get("material_type_mappings") configured = config.get("material_type_mappings")
if not isinstance(configured, dict): if not isinstance(configured, dict):
@@ -456,7 +438,24 @@ class BioyondPeptideStation(BioyondWorkstation):
} }
return {"step_parameters_raw_json": augmented, "filtered_subworkflows": bindings} return {"step_parameters_raw_json": augmented, "filtered_subworkflows": bindings}
@action(always_free=True, description="按工作流名称提交多肽实验（非 Day1）", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) @action(
always_free=True,
description="按工作流名称提交多肽实验（非 Day1）",
handles=[
ActionInputHandle(
key="sample_excel_relative_path",
data_type="bioyond_sample_file",
label="样品 Excel 相对路径",
data_key="sample_excel_relative_path",
data_source=DataSource.HANDLE,
io_type="source",
),
ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR),
],
)
def submit_experiment( def submit_experiment(
self, self,
required_params: PeptideGenericSubmitRequiredParams, required_params: PeptideGenericSubmitRequiredParams,
@@ -471,7 +470,24 @@ class BioyondPeptideStation(BioyondWorkstation):
generic=True, generic=True,
) )
@action(always_free=True, description="提交 Day2 多肽定量实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) @action(
always_free=True,
description="提交 Day2 多肽定量实验",
handles=[
ActionInputHandle(
key="sample_excel_relative_path",
data_type="bioyond_sample_file",
label="样品 Excel 相对路径",
data_key="sample_excel_relative_path",
data_source=DataSource.HANDLE,
io_type="source",
),
ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR),
],
)
def submit_experiment_day2( def submit_experiment_day2(
self, self,
required_params: PeptideDay2RequiredParams, required_params: PeptideDay2RequiredParams,
@@ -480,7 +496,24 @@ class BioyondPeptideStation(BioyondWorkstation):
) -> Dict[str, Any]: ) -> Dict[str, Any]:
return self._submit_experiment_core("day2", required_params, optional_params, sample_excel_relative_path) return self._submit_experiment_core("day2", required_params, optional_params, sample_excel_relative_path)
@action(always_free=True, description="提交 Day3 线肽环化实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) @action(
always_free=True,
description="提交 Day3 线肽环化实验",
handles=[
ActionInputHandle(
key="sample_excel_relative_path",
data_type="bioyond_sample_file",
label="样品 Excel 相对路径",
data_key="sample_excel_relative_path",
data_source=DataSource.HANDLE,
io_type="source",
),
ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR),
],
)
def submit_experiment_day3( def submit_experiment_day3(
self, self,
required_params: PeptideDay3RequiredParams, required_params: PeptideDay3RequiredParams,
@@ -489,7 +522,24 @@ class BioyondPeptideStation(BioyondWorkstation):
) -> Dict[str, Any]: ) -> Dict[str, Any]:
return self._submit_experiment_core("day3", required_params, optional_params, sample_excel_relative_path) return self._submit_experiment_core("day3", required_params, optional_params, sample_excel_relative_path)
@action(always_free=True, description="提交 Day4 环肽酰化（酶标）实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) @action(
always_free=True,
description="提交 Day4 环肽酰化（酶标）实验",
handles=[
ActionInputHandle(
key="sample_excel_relative_path",
data_type="bioyond_sample_file",
label="样品 Excel 相对路径",
data_key="sample_excel_relative_path",
data_source=DataSource.HANDLE,
io_type="source",
),
ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR),
],
)
def submit_experiment_day4( def submit_experiment_day4(
self, self,
required_params: PeptideDay4RequiredParams, required_params: PeptideDay4RequiredParams,
@@ -498,7 +548,24 @@ class BioyondPeptideStation(BioyondWorkstation):
) -> Dict[str, Any]: ) -> Dict[str, Any]:
return self._submit_experiment_core("day4", required_params, optional_params, sample_excel_relative_path) return self._submit_experiment_core("day4", required_params, optional_params, sample_excel_relative_path)
@action(always_free=True, description="提交 Day4 环肽酰化 LCMS 实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) @action(
always_free=True,
description="提交 Day4 环肽酰化 LCMS 实验",
handles=[
ActionInputHandle(
key="sample_excel_relative_path",
data_type="bioyond_sample_file",
label="样品 Excel 相对路径",
data_key="sample_excel_relative_path",
data_source=DataSource.HANDLE,
io_type="source",
),
ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR),
ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR),
],
)
def submit_experiment_day4_LCMS( def submit_experiment_day4_LCMS(
self, self,
required_params: PeptideDay4LCMSRequiredParams, required_params: PeptideDay4LCMSRequiredParams,