From 72495bfc74a9847df7bde0ff84d5068b335e436b Mon Sep 17 00:00:00 2001 From: "hanhua@dp.tech" <2509856570@qq.com> Date: Mon, 18 May 2026 14:24:38 +0800 Subject: [PATCH] fix bug --- .../peptide_station/peptide_station.py | 113 ++++++++++++++---- 1 file changed, 90 insertions(+), 23 deletions(-) diff --git a/unilabos/devices/workstation/bioyond_studio/peptide_station/peptide_station.py b/unilabos/devices/workstation/bioyond_studio/peptide_station/peptide_station.py index e6239e4f..f572d4a9 100644 --- a/unilabos/devices/workstation/bioyond_studio/peptide_station/peptide_station.py +++ b/unilabos/devices/workstation/bioyond_studio/peptide_station/peptide_station.py @@ -194,24 +194,6 @@ class PeptideDay4LCMSOptionalParams(PeptideCommonSubmitOptionalParams, total=Fal pass -_SUBMIT_INPUT_HANDLES = [ - ActionInputHandle( - key="sample_excel_relative_path", - data_type="bioyond_sample_file", - label="样品 Excel 相对路径", - data_key="sample_excel_relative_path", - data_source=DataSource.HANDLE, - io_type="source", - ), -] -_SUBMIT_OUTPUT_HANDLES = [ - ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR), - ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR), - ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR), - ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR), -] - - def _apply_default_peptide_material_type_mappings(config: Dict[str, Any]) -> None: configured = config.get("material_type_mappings") if not isinstance(configured, dict): @@ -456,7 +438,24 @@ class BioyondPeptideStation(BioyondWorkstation): } return {"step_parameters_raw_json": augmented, "filtered_subworkflows": bindings} - @action(always_free=True, description="按工作流名称提交多肽实验（非 Day1）", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) + @action( + always_free=True, + description="按工作流名称提交多肽实验（非 Day1）", + handles=[ + ActionInputHandle( + key="sample_excel_relative_path", + data_type="bioyond_sample_file", + label="样品 Excel 相对路径", + data_key="sample_excel_relative_path", + data_source=DataSource.HANDLE, + io_type="source", + ), + ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR), + ], + ) def submit_experiment( self, required_params: PeptideGenericSubmitRequiredParams, @@ -471,7 +470,24 @@ class BioyondPeptideStation(BioyondWorkstation): generic=True, ) - @action(always_free=True, description="提交 Day2 多肽定量实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) + @action( + always_free=True, + description="提交 Day2 多肽定量实验", + handles=[ + ActionInputHandle( + key="sample_excel_relative_path", + data_type="bioyond_sample_file", + label="样品 Excel 相对路径", + data_key="sample_excel_relative_path", + data_source=DataSource.HANDLE, + io_type="source", + ), + ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR), + ], + ) def submit_experiment_day2( self, required_params: PeptideDay2RequiredParams, @@ -480,7 +496,24 @@ class BioyondPeptideStation(BioyondWorkstation): ) -> Dict[str, Any]: return self._submit_experiment_core("day2", required_params, optional_params, sample_excel_relative_path) - @action(always_free=True, description="提交 Day3 线肽环化实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) + @action( + always_free=True, + description="提交 Day3 线肽环化实验", + handles=[ + ActionInputHandle( + key="sample_excel_relative_path", + data_type="bioyond_sample_file", + label="样品 Excel 相对路径", + data_key="sample_excel_relative_path", + data_source=DataSource.HANDLE, + io_type="source", + ), + ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR), + ], + ) def submit_experiment_day3( self, required_params: PeptideDay3RequiredParams, @@ -489,7 +522,24 @@ class BioyondPeptideStation(BioyondWorkstation): ) -> Dict[str, Any]: return self._submit_experiment_core("day3", required_params, optional_params, sample_excel_relative_path) - @action(always_free=True, description="提交 Day4 环肽酰化（酶标）实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) + @action( + always_free=True, + description="提交 Day4 环肽酰化（酶标）实验", + handles=[ + ActionInputHandle( + key="sample_excel_relative_path", + data_type="bioyond_sample_file", + label="样品 Excel 相对路径", + data_key="sample_excel_relative_path", + data_source=DataSource.HANDLE, + io_type="source", + ), + ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR), + ], + ) def submit_experiment_day4( self, required_params: PeptideDay4RequiredParams, @@ -498,7 +548,24 @@ class BioyondPeptideStation(BioyondWorkstation): ) -> Dict[str, Any]: return self._submit_experiment_core("day4", required_params, optional_params, sample_excel_relative_path) - @action(always_free=True, description="提交 Day4 环肽酰化 LCMS 实验", handles=_SUBMIT_INPUT_HANDLES + _SUBMIT_OUTPUT_HANDLES) + @action( + always_free=True, + description="提交 Day4 环肽酰化 LCMS 实验", + handles=[ + ActionInputHandle( + key="sample_excel_relative_path", + data_type="bioyond_sample_file", + label="样品 Excel 相对路径", + data_key="sample_excel_relative_path", + data_source=DataSource.HANDLE, + io_type="source", + ), + ActionOutputHandle(key="order_id", data_type="bioyond_order_id", label="实验ID", data_key="order_id", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="order_ids", data_type="bioyond_order_ids", label="实验ID列表", data_key="order_ids", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="resultTable", data_type="table", label="装载确认表", data_key="resultTable", data_source=DataSource.EXECUTOR), + ActionOutputHandle(key="sample_file", data_type="bioyond_sample_file", label="样品文件", data_key="sample_file", data_source=DataSource.EXECUTOR), + ], + ) def submit_experiment_day4_LCMS( self, required_params: PeptideDay4LCMSRequiredParams,