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- Add the Bioyond peptide station package with the station-facing Day2 submission flow inlined into BioyondPeptideStation. - Add LIMS sample Excel upload, Day2/Day3 order creation helpers, scheduler/reset controls, and manual-confirm start/reset actions. - Register peptide material PLR resource classes and default peptide material type mappings for runtime resource synchronization. - Add the Bioyond peptide deck definition and warehouse axis/key-axis metadata needed for peptide layout conversion. - Update shared Bioyond warehouse/resource conversion helpers so peptide deck coordinates round-trip correctly. - Include shared Bioyond raw-call debug logging support used by station actions, with a generic local debug output default. - Register the peptide deck in PLR additional resources for deserialization/import visibility. - Exclude private temp_benyao docs, HAR/API inputs, live diagnostics, and siRNA-only station/material files from this handoff commit.