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https://github.com/deepmodeling/Uni-Lab-OS
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98c27cde40
- Expose siRNA order and material handles for manual-confirm load workflows. - Gate scheduler start on explicit material-load confirmation before calling Bioyond RPC. - Improve lazy API config diagnostics and Sirna warehouse/material resource handling.
127 lines
4.3 KiB
Python
127 lines
4.3 KiB
Python
"""Sirna Station Material Resource Definitions
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Defines PyLabRobot resource classes for Bioyond Sirna station materials.
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Each class is decorated with @resource for AST-based registry discovery.
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"""
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from collections import OrderedDict
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from pylabrobot.resources import Plate, TipRack, Container
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from unilabos.registry.decorators import resource
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@resource(
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id="bioyond_sirna_g3_200ul_tip_rack",
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category=["labware", "tip_rack"],
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description="G3-200ul枪头盒 for Sirna station",
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)
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class BioyondSirna_G3_200ul_TipRack(TipRack):
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"""G3-200ul tip rack for Sirna liquid handling."""
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def __init__(self, *args, **kwargs):
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kwargs.setdefault("size_x", 127.76)
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kwargs.setdefault("size_y", 85.48)
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kwargs.setdefault("size_z", 64.0)
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kwargs.setdefault("model", "bioyond_sirna_g3_200ul_tip_rack")
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kwargs.setdefault("with_tips", True)
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if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
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kwargs["ordering"] = OrderedDict()
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super().__init__(*args, **kwargs)
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@resource(
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id="bioyond_sirna_g3_50ul_tip_rack",
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category=["labware", "tip_rack"],
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description="G3-50ul枪头盒 for Sirna station",
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)
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class BioyondSirna_G3_50ul_TipRack(TipRack):
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"""G3-50ul tip rack for Sirna liquid handling."""
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def __init__(self, *args, **kwargs):
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kwargs.setdefault("size_x", 127.76)
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kwargs.setdefault("size_y", 85.48)
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kwargs.setdefault("size_z", 64.0)
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kwargs.setdefault("model", "bioyond_sirna_g3_50ul_tip_rack")
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kwargs.setdefault("with_tips", True)
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if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
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kwargs["ordering"] = OrderedDict()
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super().__init__(*args, **kwargs)
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@resource(
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id="bioyond_sirna_384_well_plate",
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category=["labware", "plate"],
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description="384孔板 for Sirna assays",
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)
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class BioyondSirna_384WellPlate(Plate):
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"""384-well plate for Sirna reporter gene detection."""
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def __init__(self, *args, **kwargs):
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kwargs.setdefault("size_x", 127.76)
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kwargs.setdefault("size_y", 85.48)
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kwargs.setdefault("size_z", 14.35)
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kwargs.setdefault("model", "bioyond_sirna_384_well_plate")
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kwargs.setdefault("plate_type", "skirted")
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if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
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kwargs["ordering"] = OrderedDict()
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super().__init__(*args, **kwargs)
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@resource(
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id="bioyond_sirna_cell_culture_plate",
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category=["labware", "plate"],
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description="细胞培养板 for Sirna cell culture",
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)
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class BioyondSirna_CellCulturePlate(Plate):
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"""Cell culture plate for Sirna experiments."""
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def __init__(self, *args, **kwargs):
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kwargs.setdefault("size_x", 127.76)
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kwargs.setdefault("size_y", 85.48)
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kwargs.setdefault("size_z", 14.35)
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kwargs.setdefault("model", "bioyond_sirna_cell_culture_plate")
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kwargs.setdefault("plate_type", "skirted")
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if kwargs.get("ordering") is None and kwargs.get("ordered_items") is None:
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kwargs["ordering"] = OrderedDict()
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super().__init__(*args, **kwargs)
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@resource(
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id="bioyond_sirna_reagent_trough",
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category=["labware", "trough"],
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description="试剂槽 for Sirna reagents",
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)
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class BioyondSirna_ReagentTrough(Container):
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"""Reagent trough for Sirna station reagents (RiboGreen, etc.)."""
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def __init__(self, *args, **kwargs):
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kwargs.setdefault("size_x", 127.76)
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kwargs.setdefault("size_y", 85.48)
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kwargs.setdefault("size_z", 44.0)
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kwargs.setdefault("max_volume", 300000.0)
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kwargs.setdefault("model", "bioyond_sirna_reagent_trough")
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super().__init__(*args, **kwargs)
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# Material type code mapping for dynamic instantiation
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MATERIAL_TYPE_CODE_TO_CLASS = {
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"0016": BioyondSirna_G3_200ul_TipRack,
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"0017": BioyondSirna_G3_50ul_TipRack,
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"0015": BioyondSirna_384WellPlate,
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"0001": BioyondSirna_CellCulturePlate,
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"0006": BioyondSirna_ReagentTrough,
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}
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def get_material_class_by_type_code(type_code: str):
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"""Get resource class by Bioyond material type code.
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Args:
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type_code: Bioyond materialTypeCode (e.g., "0016", "0017")
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Returns:
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Resource class or None if not found
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"""
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return MATERIAL_TYPE_CODE_TO_CLASS.get(type_code)
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