- Add the Bioyond peptide station package with the station-facing Day2 submission flow inlined into BioyondPeptideStation.
- Add LIMS sample Excel upload, Day2/Day3 order creation helpers, scheduler/reset controls, and manual-confirm start/reset actions.
- Register peptide material PLR resource classes and default peptide material type mappings for runtime resource synchronization.
- Add the Bioyond peptide deck definition and warehouse axis/key-axis metadata needed for peptide layout conversion.
- Update shared Bioyond warehouse/resource conversion helpers so peptide deck coordinates round-trip correctly.
- Include shared Bioyond raw-call debug logging support used by station actions, with a generic local debug output default.
- Register the peptide deck in PLR additional resources for deserialization/import visibility.
- Exclude private temp_benyao docs, HAR/API inputs, live diagnostics, and siRNA-only station/material files from this handoff commit.
