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https://github.com/deepmodeling/Uni-Lab-OS
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修改pylabrobot更新后的影响
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@@ -207,32 +207,44 @@ class LiquidHandlerMiddleware(LiquidHandler):
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offsets: Optional[List[Coordinate]] = None,
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liquid_height: Optional[List[Optional[float]]] = None,
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blow_out_air_volume: Optional[List[Optional[float]]] = None,
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spread: Literal["wide", "tight", "custom"] = "wide",
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spread: Literal["wide", "tight", "custom"] = "custom",
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**backend_kwargs,
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):
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if spread == "":
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spread = "wide"
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spread = "custom"
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def _safe_aspirate_volumes(_resources: Sequence[Container], _vols: List[float]) -> List[float]:
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"""将 aspirate 体积裁剪到源容器当前液量范围内,避免 volume tracker 报错。"""
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"""将 aspirate 体积裁剪到源容器当前液量及 tip 剩余容量范围内,避免 volume tracker 报错。"""
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safe: List[float] = []
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for res, vol in zip(_resources, _vols):
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_head_owner = getattr(self, '_simulate_handler', None) or self
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_head = getattr(_head_owner, 'head', {})
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_channels = use_channels or list(range(len(_resources)))
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for i, (res, vol) in enumerate(zip(_resources, _vols)):
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req = max(float(vol), 0.0)
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used_volume = None
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tracker_disabled = False
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try:
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tracker = getattr(res, "tracker", None)
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if bool(getattr(tracker, "is_disabled", False)):
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# tracker 关闭时(例如预吸空气),不按液体体积裁剪
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safe.append(req)
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continue
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get_used = getattr(tracker, "get_used_volume", None)
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if callable(get_used):
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used_volume = get_used()
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tracker_disabled = bool(getattr(tracker, "is_disabled", False))
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if not tracker_disabled:
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get_used = getattr(tracker, "get_used_volume", None)
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if callable(get_used):
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used_volume = get_used()
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if isinstance(used_volume, (int, float)) and used_volume > 0:
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req = min(req, float(used_volume))
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except Exception:
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used_volume = None
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pass
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if not tracker_disabled:
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try:
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ch = _channels[i] if i < len(_channels) else i
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if ch in _head and _head[ch].has_tip:
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_tip = _head[ch].get_tip()
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_tip_free = _tip.maximal_volume - _tip.tracker.get_used_volume()
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if _tip_free >= 0:
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req = min(req, _tip_free)
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except Exception:
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pass
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if isinstance(used_volume, (int, float)):
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req = min(req, max(float(used_volume), 0.0))
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safe.append(req)
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return safe
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@@ -103,7 +103,7 @@ class PRCXI9300Deck(Deck):
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def __init__(self, name: str, size_x: float, size_y: float, size_z: float,
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sites: Optional[List[Dict[str, Any]]] = None, **kwargs):
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super().__init__(name, size_x, size_y, size_z)
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super().__init__( size_x, size_y, size_z, name=name)
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if sites is not None:
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self.sites: List[Dict[str, Any]] = [dict(s) for s in sites]
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else:
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